Protein–RNA interactions for Protein: Q99715

COL12A1, Collagen alpha-1(XII) chain, humanhuman

Predictions only

Length 3,063 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1Q99715 CREM-229ENST00000474362 1030 ntTSL 2 BASIC22.17■■□□□ 1.14
COL12A1Q99715 LTC4S-205ENST00000486713 496 ntTSL 2 BASIC22.17■■□□□ 1.14
COL12A1Q99715 TCEA1-213ENST00000640041 1171 ntTSL 5 BASIC22.17■■□□□ 1.14
COL12A1Q99715 TMEM120A-214ENST00000493111 1456 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
COL12A1Q99715 C14orf80-211ENST00000450383 1107 ntAPPRIS ALT2 TSL 5 BASIC22.17■■□□□ 1.14
COL12A1Q99715 HYI-210ENST00000486909 905 ntTSL 5 BASIC22.17■■□□□ 1.14
COL12A1Q99715 IL17D-201ENST00000304920 1861 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
COL12A1Q99715 IDNK-201ENST00000376417 511 ntTSL 5 BASIC22.17■■□□□ 1.14
COL12A1Q99715 IDNK-202ENST00000376419 692 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
COL12A1Q99715 AC005837.3-201ENST00000612163 286 ntBASIC22.16■■□□□ 1.14
COL12A1Q99715 MSRB2-201ENST00000376510 1803 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
COL12A1Q99715 PSMG4-206ENST00000438998 838 ntAPPRIS P1 TSL 2 BASIC22.15■■□□□ 1.14
COL12A1Q99715 EFNA1-202ENST00000368407 1926 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
COL12A1Q99715 SLC16A8-201ENST00000320521 1878 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
COL12A1Q99715 TSPY4-202ENST00000426950 1179 ntAPPRIS P5 TSL 5 BASIC22.15■■□□□ 1.14
COL12A1Q99715 FEZ1-201ENST00000278919 1748 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
COL12A1Q99715 MRPL4-201ENST00000253099 1455 ntAPPRIS P2 TSL 1 (best) BASIC22.15■■□□□ 1.14
COL12A1Q99715 AC093536.1-201ENST00000569153 554 ntBASIC22.15■■□□□ 1.14
COL12A1Q99715 BCL7B-201ENST00000223368 1975 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.14
COL12A1Q99715 OVOL2-201ENST00000278780 1555 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.14
COL12A1Q99715 GATA2-AS1-202ENST00000468377 1578 ntTSL 2 BASIC22.14■■□□□ 1.14
COL12A1Q99715 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC22.14■■□□□ 1.14
COL12A1Q99715 TUBBP5-204ENST00000635438 565 ntTSL 4 BASIC22.14■■□□□ 1.13
COL12A1Q99715 ZNF606-203ENST00000547121 1196 ntTSL 2 BASIC22.13■■□□□ 1.13
COL12A1Q99715 DHRS13-203ENST00000426464 1569 ntTSL 2 BASIC22.13■■□□□ 1.13
COL12A1Q99715 AC131281.2-201ENST00000520478 145 ntBASIC22.13■■□□□ 1.13
COL12A1Q99715 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC22.13■■□□□ 1.13
COL12A1Q99715 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC22.12■■□□□ 1.13
COL12A1Q99715 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC22.12■■□□□ 1.13
COL12A1Q99715 LINC01233-202ENST00000598832 568 ntTSL 2 BASIC22.12■■□□□ 1.13
COL12A1Q99715 C14orf80-203ENST00000354560 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC22.11■■□□□ 1.13
COL12A1Q99715 AP2S1-201ENST00000263270 935 ntAPPRIS P3 TSL 1 (best) BASIC22.11■■□□□ 1.13
COL12A1Q99715 ZFAND5-202ENST00000343431 1073 ntAPPRIS P1 TSL 5 BASIC22.11■■□□□ 1.13
COL12A1Q99715 AC026271.2-201ENST00000428091 497 ntBASIC22.11■■□□□ 1.13
COL12A1Q99715 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC22.11■■□□□ 1.13
COL12A1Q99715 CDKN2A-208ENST00000498124 880 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
COL12A1Q99715 HAGHL-205ENST00000561546 1041 ntTSL 2 BASIC22.11■■□□□ 1.13
COL12A1Q99715 FAM173A-207ENST00000569529 1052 ntAPPRIS P3 TSL 1 (best) BASIC22.11■■□□□ 1.13
COL12A1Q99715 AC110285.6-201ENST00000617652 491 ntBASIC22.11■■□□□ 1.13
COL12A1Q99715 PKIG-205ENST00000372891 1443 ntAPPRIS P1 TSL 2 BASIC22.11■■□□□ 1.13
COL12A1Q99715 TXNRD2-205ENST00000400525 1874 ntTSL 5 BASIC22.11■■□□□ 1.13
COL12A1Q99715 TMPO-AS1-201ENST00000546421 738 ntTSL 5 BASIC22.1■■□□□ 1.13
COL12A1Q99715 AC008105.2-203ENST00000591361 550 ntTSL 4 BASIC22.1■■□□□ 1.13
COL12A1Q99715 DRAP1-201ENST00000312515 989 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
COL12A1Q99715 IDNK-203ENST00000405990 629 ntTSL 2 BASIC22.08■■□□□ 1.13
COL12A1Q99715 MSRB1-206ENST00000622125 1363 ntAPPRIS ALT1 TSL 5 BASIC22.08■■□□□ 1.13
COL12A1Q99715 DNPEP-201ENST00000273075 2425 ntAPPRIS P3 TSL 1 (best) BASIC22.08■■□□□ 1.12
COL12A1Q99715 LSM7-204ENST00000587502 575 ntTSL 1 (best) BASIC22.08■■□□□ 1.12
COL12A1Q99715 RASL10A-202ENST00000401450 1720 ntTSL 2 BASIC22.07■■□□□ 1.12
COL12A1Q99715 TMEM171-202ENST00000454765 1535 ntAPPRIS P3 TSL 1 (best) BASIC22.07■■□□□ 1.12
COL12A1Q99715 GRK6-206ENST00000507633 1660 ntTSL 5 BASIC22.07■■□□□ 1.12
COL12A1Q99715 AC103702.2-201ENST00000433510 1270 ntTSL 2 BASIC22.07■■□□□ 1.12
COL12A1Q99715 AC104564.3-201ENST00000582367 638 ntBASIC22.07■■□□□ 1.12
COL12A1Q99715 INPP4A-203ENST00000409463 1565 ntTSL 1 (best) BASIC22.07■■□□□ 1.12
COL12A1Q99715 SLC25A23-203ENST00000334510 1424 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
COL12A1Q99715 OSCAR-206ENST00000391760 629 ntTSL 2 BASIC22.06■■□□□ 1.12
COL12A1Q99715 HMX1-201ENST00000400677 1895 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
COL12A1Q99715 KRT125P-201ENST00000546827 989 ntBASIC22.06■■□□□ 1.12
COL12A1Q99715 NKX2-1-204ENST00000522719 1417 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
COL12A1Q99715 NALT1-201ENST00000429224 738 ntTSL 5 BASIC22.06■■□□□ 1.12
COL12A1Q99715 TK2-216ENST00000564917 1156 ntTSL 3 BASIC22.06■■□□□ 1.12
COL12A1Q99715 TSPAN10-204ENST00000611590 1068 ntAPPRIS ALT2 TSL 1 (best) BASIC22.06■■□□□ 1.12
COL12A1Q99715 MAFA-201ENST00000333480 2347 ntAPPRIS P1 BASIC22.06■■□□□ 1.12
COL12A1Q99715 FAM159A-204ENST00000517870 748 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
COL12A1Q99715 RPUSD1-208ENST00000567114 1835 ntTSL 2 BASIC22.05■■□□□ 1.12
COL12A1Q99715 AL359258.2-201ENST00000564063 1566 ntBASIC22.05■■□□□ 1.12
COL12A1Q99715 FTCD-203ENST00000397746 1878 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
COL12A1Q99715 FSD1L-208ENST00000495708 1906 ntTSL 1 (best) BASIC22.05■■□□□ 1.12
COL12A1Q99715 MIR4787-201ENST00000607364 84 ntBASIC22.05■■□□□ 1.12
COL12A1Q99715 FADS3-201ENST00000278829 1779 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
COL12A1Q99715 CCDC160-202ENST00000517294 1790 ntAPPRIS P1 TSL 5 BASIC22.05■■□□□ 1.12
COL12A1Q99715 TMUB1-201ENST00000297533 1353 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
COL12A1Q99715 SMUG1-203ENST00000401977 1082 ntAPPRIS P1 TSL 5 BASIC22.04■■□□□ 1.12
COL12A1Q99715 NPC2-207ENST00000555619 1035 ntAPPRIS P2 TSL 1 (best) BASIC22.04■■□□□ 1.12
COL12A1Q99715 ARPC2-202ENST00000315717 1505 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
COL12A1Q99715 ZNRF2P3-201ENST00000424200 374 ntBASIC22.03■■□□□ 1.12
COL12A1Q99715 MDFIC-206ENST00000448022 484 ntTSL 2 BASIC22.03■■□□□ 1.12
COL12A1Q99715 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC22.03■■□□□ 1.12
COL12A1Q99715 KLRG2-202ENST00000393039 1148 ntTSL 5 BASIC22.03■■□□□ 1.12
COL12A1Q99715 KCNG2-201ENST00000316249 1401 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
COL12A1Q99715 AC010913.1-201ENST00000608612 420 ntTSL 2 BASIC22.02■■□□□ 1.12
COL12A1Q99715 P2RX2-202ENST00000348800 1222 ntAPPRIS ALT2 TSL 1 (best) BASIC22.02■■□□□ 1.12
COL12A1Q99715 P2RX2-204ENST00000351222 1140 ntTSL 1 (best) BASIC22.02■■□□□ 1.12
COL12A1Q99715 PFDN2-201ENST00000368010 677 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
COL12A1Q99715 AC105935.1-201ENST00000424174 422 ntTSL 3 BASIC22.02■■□□□ 1.12
COL12A1Q99715 P2RX2-207ENST00000449132 1113 ntTSL 1 (best) BASIC22.02■■□□□ 1.12
COL12A1Q99715 EDA-209ENST00000525810 843 ntTSL 1 (best) BASIC22.02■■□□□ 1.12
COL12A1Q99715 SSX2IP-209ENST00000603677 1149 ntTSL 1 (best) BASIC22.02■■□□□ 1.12
COL12A1Q99715 NIT1-201ENST00000368007 1749 ntTSL 2 BASIC22.02■■□□□ 1.12
COL12A1Q99715 MAST4-206ENST00000406374 1066 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
COL12A1Q99715 H1FX-AS1-204ENST00000511998 917 ntTSL 5 BASIC22.01■■□□□ 1.11
COL12A1Q99715 AL121987.2-201ENST00000418602 1578 ntTSL 2 BASIC22.01■■□□□ 1.11
COL12A1Q99715 MAST4-205ENST00000406039 717 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
COL12A1Q99715 HES4-201ENST00000304952 899 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
COL12A1Q99715 AL121906.1-201ENST00000606866 440 ntTSL 3 BASIC22■■□□□ 1.11
COL12A1Q99715 AC018755.3-202ENST00000596210 929 ntBASIC22■■□□□ 1.11
COL12A1Q99715 ZAR1-201ENST00000327939 1460 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
COL12A1Q99715 AC138647.1-201ENST00000427937 648 ntAPPRIS P1 TSL 5 BASIC21.99■■□□□ 1.11
COL12A1Q99715 CACNG6-203ENST00000352529 1635 ntTSL 5 BASIC21.99■■□□□ 1.11
COL12A1Q99715 EGFL8-220ENST00000395512 1312 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
Retrieved 100 of 98,524 protein–RNA pairs in 46.8 ms