Protein–RNA interactions for Protein: Q92541

RTF1, RNA polymerase-associated protein RTF1 homolog, humanhuman

Known RBP Predictions only

Length 710 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1Q92541 TMEM200C-201ENST00000383490 1920 ntAPPRIS P1 BASIC32.5■■■□□ 2.79
RTF1Q92541 MAPK3-203ENST00000395199 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC32.49■■■□□ 2.79
RTF1Q92541 SNX5-219ENST00000606602 885 ntTSL 1 (best) BASIC32.49■■■□□ 2.79
RTF1Q92541 ACTR3B-201ENST00000256001 2216 ntAPPRIS P1 TSL 1 (best) BASIC32.49■■■□□ 2.79
RTF1Q92541 SLC9A3-AS1-207ENST00000607286 1357 ntTSL 5 BASIC32.48■■■□□ 2.79
RTF1Q92541 C11orf80-218ENST00000540737 1786 ntAPPRIS ALT2 TSL 2 BASIC32.48■■■□□ 2.79
RTF1Q92541 NKIRAS2-208ENST00000462043 585 ntTSL 4 BASIC32.48■■■□□ 2.79
RTF1Q92541 PQLC3-201ENST00000295083 1830 ntAPPRIS P1 TSL 1 (best) BASIC32.48■■■□□ 2.79
RTF1Q92541 WTAP-206ENST00000621533 2109 ntAPPRIS P1 TSL 2 BASIC32.48■■■□□ 2.79
RTF1Q92541 TRADD-201ENST00000345057 1877 ntAPPRIS P1 TSL 1 (best) BASIC32.47■■■□□ 2.79
RTF1Q92541 MDFIC-206ENST00000448022 484 ntTSL 2 BASIC32.47■■■□□ 2.79
RTF1Q92541 MAF-201ENST00000326043 2646 ntAPPRIS P3 TSL 1 (best) BASIC32.46■■■□□ 2.79
RTF1Q92541 FAM117A-201ENST00000240364 2365 ntAPPRIS P2 TSL 1 (best) BASIC32.45■■■□□ 2.78
RTF1Q92541 CLEC11A-201ENST00000250340 1419 ntAPPRIS P1 TSL 1 (best) BASIC32.44■■■□□ 2.78
RTF1Q92541 KRT18P60-201ENST00000312876 1297 ntBASIC32.44■■■□□ 2.78
RTF1Q92541 AC107214.1-201ENST00000457303 559 ntTSL 1 (best) BASIC32.44■■■□□ 2.78
RTF1Q92541 WBP1-202ENST00000393972 1325 ntTSL 2 BASIC32.44■■■□□ 2.78
RTF1Q92541 LACTB-201ENST00000261893 1972 ntAPPRIS P1 TSL 1 (best) BASIC32.43■■■□□ 2.78
RTF1Q92541 GNAS-AS1_1.1-201ENST00000621898 103 ntBASIC32.43■■■□□ 2.78
RTF1Q92541 COL13A1-213ENST00000520267 2276 ntAPPRIS ALT2 TSL 5 BASIC32.43■■■□□ 2.78
RTF1Q92541 CD6-206ENST00000452451 1782 ntAPPRIS ALT2 TSL 1 (best) BASIC32.42■■■□□ 2.78
RTF1Q92541 PDK1-202ENST00000392571 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC32.42■■■□□ 2.78
RTF1Q92541 C20orf24-203ENST00000373852 1059 ntTSL 1 (best) BASIC32.42■■■□□ 2.78
RTF1Q92541 UBE2D2-205ENST00000505548 1113 ntTSL 1 (best) BASIC32.42■■■□□ 2.78
RTF1Q92541 EMID1-202ENST00000404755 2049 ntTSL 5 BASIC32.42■■■□□ 2.78
RTF1Q92541 DEXI-202ENST00000469379 1393 ntAPPRIS P1 TSL 2 BASIC32.42■■■□□ 2.78
RTF1Q92541 C17orf97-201ENST00000360127 1839 ntAPPRIS P2 TSL 1 (best) BASIC32.42■■■□□ 2.78
RTF1Q92541 PBX1-202ENST00000367897 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC32.42■■■□□ 2.78
RTF1Q92541 PPAN-202ENST00000393793 1575 ntTSL 5 BASIC32.41■■■□□ 2.78
RTF1Q92541 LINC01003-201ENST00000564834 1764 ntBASIC32.41■■■□□ 2.78
RTF1Q92541 AC133552.2-201ENST00000619106 1032 ntBASIC32.41■■■□□ 2.78
RTF1Q92541 PKIG-205ENST00000372891 1443 ntAPPRIS P1 TSL 2 BASIC32.41■■■□□ 2.78
RTF1Q92541 RAD21-AS1-201ENST00000521487 2010 ntTSL 1 (best) BASIC32.41■■■□□ 2.78
RTF1Q92541 AC009831.1-201ENST00000580420 1582 ntBASIC32.41■■■□□ 2.78
RTF1Q92541 TYMP-201ENST00000252029 1630 ntAPPRIS P3 TSL 1 (best) BASIC32.4■■■□□ 2.78
RTF1Q92541 NFYB-205ENST00000551727 1727 ntAPPRIS P1 TSL 3 BASIC32.4■■■□□ 2.78
RTF1Q92541 RP9P-202ENST00000450133 1212 ntBASIC32.4■■■□□ 2.78
RTF1Q92541 PFN2-211ENST00000489155 636 ntTSL 4 BASIC32.39■■■□□ 2.78
RTF1Q92541 GFER-205ENST00000569451 517 ntTSL 5 BASIC32.39■■■□□ 2.78
RTF1Q92541 HNRNPUL1-221ENST00000617305 1018 ntTSL 1 (best) BASIC32.39■■■□□ 2.78
RTF1Q92541 PHYH-201ENST00000263038 1577 ntAPPRIS P1 TSL 1 (best) BASIC32.39■■■□□ 2.78
RTF1Q92541 AL359504.2-201ENST00000605506 1601 ntBASIC32.39■■■□□ 2.78
RTF1Q92541 ABHD12-202ENST00000376542 1725 ntTSL 1 (best) BASIC32.38■■■□□ 2.77
RTF1Q92541 ZSCAN1-202ENST00000391700 952 ntTSL 1 (best) BASIC32.38■■■□□ 2.77
RTF1Q92541 C11orf96-203ENST00000617612 1294 ntAPPRIS P1 BASIC32.38■■■□□ 2.77
RTF1Q92541 LDLRAD3-203ENST00000528989 1879 ntTSL 1 (best) BASIC32.37■■■□□ 2.77
RTF1Q92541 LYPD6B-204ENST00000409876 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC32.37■■■□□ 2.77
RTF1Q92541 MXD3-208ENST00000513063 861 ntAPPRIS P1 TSL 5 BASIC32.37■■■□□ 2.77
RTF1Q92541 FAM222B-205ENST00000577682 549 ntTSL 4 BASIC32.37■■■□□ 2.77
RTF1Q92541 MIR3960-201ENST00000583311 91 ntBASIC32.37■■■□□ 2.77
RTF1Q92541 AC026202.3-201ENST00000600805 1127 ntBASIC32.37■■■□□ 2.77
RTF1Q92541 RFFL-206ENST00000447669 2030 ntAPPRIS P1 TSL 5 BASIC32.37■■■□□ 2.77
RTF1Q92541 POTEF-201ENST00000361163 1586 ntTSL 5 BASIC32.36■■■□□ 2.77
RTF1Q92541 LZTS2-201ENST00000370220 5741 ntAPPRIS P1 TSL 1 (best) BASIC32.36■■■□□ 2.77
RTF1Q92541 EVC-203ENST00000509451 1960 ntTSL 1 (best) BASIC32.36■■■□□ 2.77
RTF1Q92541 C20orf24-201ENST00000342422 896 ntTSL 2 BASIC32.36■■■□□ 2.77
RTF1Q92541 C20orf24-202ENST00000344795 1114 ntAPPRIS P1 TSL 1 (best) BASIC32.36■■■□□ 2.77
RTF1Q92541 ADAMTSL5-202ENST00000395467 1533 ntTSL 5 BASIC32.36■■■□□ 2.77
RTF1Q92541 MNX1-201ENST00000252971 2174 ntAPPRIS P3 TSL 1 (best) BASIC32.35■■■□□ 2.77
RTF1Q92541 SMARCD3-203ENST00000392811 2018 ntTSL 1 (best) BASIC32.35■■■□□ 2.77
RTF1Q92541 AL033527.3-201ENST00000566366 1196 ntBASIC32.35■■■□□ 2.77
RTF1Q92541 AC093536.1-201ENST00000569153 554 ntBASIC32.35■■■□□ 2.77
RTF1Q92541 CAPNS1-215ENST00000628018 1509 ntAPPRIS ALT2 TSL 5 BASIC32.35■■■□□ 2.77
RTF1Q92541 PSMG3-202ENST00000288607 1391 ntAPPRIS P1 TSL 1 (best) BASIC32.34■■■□□ 2.77
RTF1Q92541 CABP1-202ENST00000316803 1658 ntTSL 1 (best) BASIC32.34■■■□□ 2.77
RTF1Q92541 PSMG4-206ENST00000438998 838 ntAPPRIS P1 TSL 2 BASIC32.34■■■□□ 2.77
RTF1Q92541 PSMG4-207ENST00000451246 824 ntTSL 3 BASIC32.34■■■□□ 2.77
RTF1Q92541 AL592293.1-201ENST00000502889 1188 ntBASIC32.34■■■□□ 2.77
RTF1Q92541 NEURL1B-203ENST00000522853 1263 ntTSL 1 (best) BASIC32.34■■■□□ 2.77
RTF1Q92541 VEGFC-202ENST00000618562 2064 ntAPPRIS P1 TSL 1 (best) BASIC32.34■■■□□ 2.77
RTF1Q92541 EXOC3L4-201ENST00000380069 2293 ntAPPRIS P1 TSL 1 (best) BASIC32.33■■■□□ 2.77
RTF1Q92541 SERPING1-205ENST00000403558 2231 ntTSL 5 BASIC32.33■■■□□ 2.77
RTF1Q92541 KAZN-207ENST00000503743 1475 ntTSL 1 (best) BASIC32.33■■■□□ 2.77
RTF1Q92541 GPR75-ASB3-201ENST00000406625 2113 ntAPPRIS P1 TSL 2 BASIC32.33■■■□□ 2.77
RTF1Q92541 VEGFA-209ENST00000425836 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC32.32■■■□□ 2.77
RTF1Q92541 PTPA-210ENST00000414510 1153 ntTSL 1 (best) BASIC32.32■■■□□ 2.76
RTF1Q92541 HES4-204ENST00000484667 667 ntTSL 3 BASIC32.32■■■□□ 2.76
RTF1Q92541 SLC16A3-214ENST00000582743 2002 ntAPPRIS P1 TSL 1 (best) BASIC32.32■■■□□ 2.76
RTF1Q92541 ANKRD53-203ENST00000441349 1797 ntTSL 5 BASIC32.32■■■□□ 2.76
RTF1Q92541 SPIRE1-202ENST00000409402 5665 ntAPPRIS ALT2 TSL 1 (best) BASIC32.32■■■□□ 2.76
RTF1Q92541 ANGPTL6-203ENST00000589181 1579 ntTSL 5 BASIC32.32■■■□□ 2.76
RTF1Q92541 ZNF639-209ENST00000496856 2033 ntAPPRIS P1 TSL 1 (best) BASIC32.31■■■□□ 2.76
RTF1Q92541 SDF2L1-201ENST00000248958 865 ntAPPRIS P1 TSL 1 (best) BASIC32.31■■■□□ 2.76
RTF1Q92541 AC004987.1-201ENST00000428627 508 ntBASIC32.31■■■□□ 2.76
RTF1Q92541 PQLC3-204ENST00000441908 1784 ntTSL 2 BASIC32.31■■■□□ 2.76
RTF1Q92541 COQ2-201ENST00000311461 1464 ntAPPRIS ALT2 TSL 5 BASIC32.3■■■□□ 2.76
RTF1Q92541 TSPY13P-201ENST00000338964 914 ntBASIC32.3■■■□□ 2.76
RTF1Q92541 IFI30-201ENST00000407280 1134 ntAPPRIS P1 TSL 1 (best) BASIC32.3■■■□□ 2.76
RTF1Q92541 MFSD12-201ENST00000355415 2124 ntAPPRIS P3 TSL 1 (best) BASIC32.3■■■□□ 2.76
RTF1Q92541 C1QTNF5-202ENST00000528368 1356 ntAPPRIS P1 TSL 1 (best) BASIC32.3■■■□□ 2.76
RTF1Q92541 BARX1-202ENST00000401724 1323 ntTSL 1 (best) BASIC32.29■■■□□ 2.76
RTF1Q92541 ATP5G2P3-201ENST00000429083 425 ntBASIC32.29■■■□□ 2.76
RTF1Q92541 HOXC9-201ENST00000303450 1516 ntAPPRIS P1 TSL 1 (best) BASIC32.29■■■□□ 2.76
RTF1Q92541 PQLC1-203ENST00000397778 2555 ntAPPRIS P3 TSL 1 (best) BASIC32.29■■■□□ 2.76
RTF1Q92541 WBP1-201ENST00000233615 1294 ntAPPRIS P2 TSL 1 (best) BASIC32.28■■■□□ 2.76
RTF1Q92541 PPP1R14A-201ENST00000301242 777 ntAPPRIS P1 TSL 1 (best) BASIC32.28■■■□□ 2.76
RTF1Q92541 AC009690.3-201ENST00000569547 1902 ntAPPRIS P1 TSL 2 BASIC32.28■■■□□ 2.76
RTF1Q92541 UBE2I-213ENST00000566587 1098 ntAPPRIS P1 TSL 2 BASIC32.27■■■□□ 2.76
RTF1Q92541 PLSCR3-209ENST00000574401 2032 ntAPPRIS P1 TSL 1 (best) BASIC32.27■■■□□ 2.76
RTF1Q92541 REXO4-201ENST00000371935 1899 ntTSL 3 BASIC32.27■■■□□ 2.76
Retrieved 100 of 98,524 protein–RNA pairs in 30.1 ms