Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 DAZAP1-202ENST00000336761 2290 ntTSL 5 BASIC25.4■■□□□ 1.66
SHROOM3Q8TF72 LSM6-202ENST00000502781 1352 ntAPPRIS P1 TSL 1 (best) BASIC25.4■■□□□ 1.66
SHROOM3Q8TF72 S1PR4-201ENST00000246115 1565 ntAPPRIS P1 BASIC25.4■■□□□ 1.66
SHROOM3Q8TF72 SLC25A23-203ENST00000334510 1424 ntTSL 1 (best) BASIC25.4■■□□□ 1.66
SHROOM3Q8TF72 ANKRD9-205ENST00000560748 1413 ntAPPRIS P1 TSL 2 BASIC25.4■■□□□ 1.66
SHROOM3Q8TF72 PEA15-201ENST00000360472 2471 ntAPPRIS P1 TSL 1 (best) BASIC25.39■■□□□ 1.66
SHROOM3Q8TF72 TBX1-201ENST00000329705 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC25.39■■□□□ 1.66
SHROOM3Q8TF72 UBA52-204ENST00000595158 743 ntAPPRIS P1 TSL 3 BASIC25.39■■□□□ 1.66
SHROOM3Q8TF72 YBX2-201ENST00000007699 1590 ntAPPRIS P1 TSL 1 (best) BASIC25.39■■□□□ 1.65
SHROOM3Q8TF72 MTMR1-202ENST00000370390 2755 ntAPPRIS P1 TSL 1 (best) BASIC25.38■■□□□ 1.65
SHROOM3Q8TF72 AC007383.2-202ENST00000435627 482 ntTSL 2 BASIC25.38■■□□□ 1.65
SHROOM3Q8TF72 MAP4K3-211ENST00000484274 407 ntTSL 2 BASIC25.38■■□□□ 1.65
SHROOM3Q8TF72 AKAP8L-208ENST00000595465 1933 ntTSL 2 BASIC25.38■■□□□ 1.65
SHROOM3Q8TF72 AP000911.3-201ENST00000526377 1130 ntTSL 3 BASIC25.38■■□□□ 1.65
SHROOM3Q8TF72 KCNG2-201ENST00000316249 1401 ntAPPRIS P1 TSL 1 (best) BASIC25.37■■□□□ 1.65
SHROOM3Q8TF72 KANSL2-215ENST00000553086 1830 ntTSL 5 BASIC25.37■■□□□ 1.65
SHROOM3Q8TF72 FLJ37453-201ENST00000317122 2473 ntTSL 2 BASIC25.36■■□□□ 1.65
SHROOM3Q8TF72 ZDHHC16-207ENST00000393760 2014 ntAPPRIS P4 TSL 1 (best) BASIC25.36■■□□□ 1.65
SHROOM3Q8TF72 ZBTB25-202ENST00000555220 1440 ntTSL 1 (best) BASIC25.36■■□□□ 1.65
SHROOM3Q8TF72 TAF10-201ENST00000299424 1215 ntAPPRIS P1 TSL 1 (best) BASIC25.35■■□□□ 1.65
SHROOM3Q8TF72 FAM107B-205ENST00000378467 2374 ntAPPRIS P1 TSL 1 (best) BASIC25.35■■□□□ 1.65
SHROOM3Q8TF72 RPS20-211ENST00000524349 752 ntTSL 1 (best) BASIC25.35■■□□□ 1.65
SHROOM3Q8TF72 MED25-210ENST00000612854 801 ntTSL 5 BASIC25.35■■□□□ 1.65
SHROOM3Q8TF72 MED25-213ENST00000620467 1293 ntTSL 1 (best) BASIC25.35■■□□□ 1.65
SHROOM3Q8TF72 MED25-214ENST00000622402 642 ntTSL 5 BASIC25.35■■□□□ 1.65
SHROOM3Q8TF72 TSGA13-204ENST00000456951 2046 ntAPPRIS P2 TSL 2 BASIC25.35■■□□□ 1.65
SHROOM3Q8TF72 ARTN-203ENST00000414809 1943 ntAPPRIS P4 TSL 3 BASIC25.35■■□□□ 1.65
SHROOM3Q8TF72 CADPS-215ENST00000490353 2669 ntTSL 5 BASIC25.35■■□□□ 1.65
SHROOM3Q8TF72 NAPA-201ENST00000263354 1839 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
SHROOM3Q8TF72 SOD3-201ENST00000382120 1526 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
SHROOM3Q8TF72 EPB41L4A-AS2-201ENST00000623705 1396 ntBASIC25.33■■□□□ 1.65
SHROOM3Q8TF72 TIGD3-201ENST00000309880 2012 ntAPPRIS P1 TSL 2 BASIC25.33■■□□□ 1.65
SHROOM3Q8TF72 SNTB1-202ENST00000517992 2273 ntAPPRIS P1 TSL 1 (best) BASIC25.33■■□□□ 1.65
SHROOM3Q8TF72 NRARP-201ENST00000356628 1770 ntAPPRIS P1 BASIC25.33■■□□□ 1.65
SHROOM3Q8TF72 AC078883.1-202ENST00000450443 1397 ntTSL 3 BASIC25.33■■□□□ 1.65
SHROOM3Q8TF72 IRAK1-205ENST00000429936 2127 ntTSL 5 BASIC25.32■■□□□ 1.64
SHROOM3Q8TF72 PURG-201ENST00000339382 2693 ntTSL 1 (best) BASIC25.32■■□□□ 1.64
SHROOM3Q8TF72 CCND3-203ENST00000372991 2085 ntAPPRIS P1 TSL 1 (best) BASIC25.32■■□□□ 1.64
SHROOM3Q8TF72 CCDC136-206ENST00000464832 1720 ntAPPRIS ALT2 TSL 5 BASIC25.32■■□□□ 1.64
SHROOM3Q8TF72 FKBP1A-204ENST00000400137 1622 ntAPPRIS P1 TSL 1 (best) BASIC25.32■■□□□ 1.64
SHROOM3Q8TF72 AHSA2-201ENST00000357022 2437 ntTSL 1 (best) BASIC25.31■■□□□ 1.64
SHROOM3Q8TF72 PMS1-220ENST00000618056 1468 ntTSL 5 BASIC25.31■■□□□ 1.64
SHROOM3Q8TF72 AC060814.1-201ENST00000554326 538 ntBASIC25.31■■□□□ 1.64
SHROOM3Q8TF72 C16orf74-204ENST00000602719 1002 ntAPPRIS ALT2 TSL 3 BASIC25.31■■□□□ 1.64
SHROOM3Q8TF72 RHBDD2-202ENST00000318622 1878 ntTSL 2 BASIC25.3■■□□□ 1.64
SHROOM3Q8TF72 TTC3-225ENST00000540756 2025 ntTSL 2 BASIC25.3■■□□□ 1.64
SHROOM3Q8TF72 CCDC136-202ENST00000378685 1689 ntAPPRIS ALT2 TSL 2 BASIC25.3■■□□□ 1.64
SHROOM3Q8TF72 ARL6IP4-211ENST00000454885 1318 ntAPPRIS ALT2 TSL 1 (best) BASIC25.3■■□□□ 1.64
SHROOM3Q8TF72 ZNF219-201ENST00000360947 3071 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
SHROOM3Q8TF72 FLT1-202ENST00000539099 1911 ntTSL 1 (best) BASIC25.3■■□□□ 1.64
SHROOM3Q8TF72 CNNM2-201ENST00000369875 2059 ntTSL 1 (best) BASIC25.3■■□□□ 1.64
SHROOM3Q8TF72 MRAP2-201ENST00000257776 2153 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
SHROOM3Q8TF72 RAD51-208ENST00000532743 1515 ntTSL 2 BASIC25.3■■□□□ 1.64
SHROOM3Q8TF72 CIB2-202ENST00000539011 1511 ntTSL 1 (best) BASIC25.3■■□□□ 1.64
SHROOM3Q8TF72 CRTAP-202ENST00000449224 1811 ntAPPRIS ALT2 TSL 2 BASIC25.3■■□□□ 1.64
SHROOM3Q8TF72 KCTD5-202ENST00000564195 774 ntTSL 5 BASIC25.29■■□□□ 1.64
SHROOM3Q8TF72 ST7L-206ENST00000369666 1815 ntTSL 1 (best) BASIC25.29■■□□□ 1.64
SHROOM3Q8TF72 OTUD5-208ENST00000610466 2487 ntTSL 5 BASIC25.29■■□□□ 1.64
SHROOM3Q8TF72 KCNJ4-201ENST00000303592 2065 ntAPPRIS P1 TSL 1 (best) BASIC25.29■■□□□ 1.64
SHROOM3Q8TF72 LSM7-201ENST00000252622 529 ntAPPRIS P1 TSL 1 (best) BASIC25.29■■□□□ 1.64
SHROOM3Q8TF72 TBX2-AS1-202ENST00000589814 539 ntTSL 3 BASIC25.29■■□□□ 1.64
SHROOM3Q8TF72 PHF23-205ENST00000571362 1768 ntTSL 2 BASIC25.29■■□□□ 1.64
SHROOM3Q8TF72 ATOH7-201ENST00000373673 1480 ntAPPRIS P1 BASIC25.28■■□□□ 1.64
SHROOM3Q8TF72 C19orf47-202ENST00000392035 2126 ntAPPRIS ALT2 TSL 1 (best) BASIC25.28■■□□□ 1.64
SHROOM3Q8TF72 PDK1-202ENST00000392571 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC25.28■■□□□ 1.64
SHROOM3Q8TF72 SRP68-213ENST00000629930 165 ntTSL 5 BASIC25.27■■□□□ 1.64
SHROOM3Q8TF72 PQLC3-201ENST00000295083 1830 ntAPPRIS P1 TSL 1 (best) BASIC25.27■■□□□ 1.64
SHROOM3Q8TF72 FAM168B-201ENST00000389915 944 ntAPPRIS P1 TSL 3 BASIC25.27■■□□□ 1.64
SHROOM3Q8TF72 UBALD1-203ENST00000587649 707 ntTSL 3 BASIC25.27■■□□□ 1.64
SHROOM3Q8TF72 MOB2-207ENST00000614710 705 ntTSL 5 BASIC25.26■■□□□ 1.63
SHROOM3Q8TF72 TAZ-213ENST00000601016 1889 ntTSL 1 (best) BASIC25.25■■□□□ 1.63
SHROOM3Q8TF72 PPAN-202ENST00000393793 1575 ntTSL 5 BASIC25.25■■□□□ 1.63
SHROOM3Q8TF72 RNF175-201ENST00000347063 1604 ntAPPRIS P1 TSL 1 (best) BASIC25.25■■□□□ 1.63
SHROOM3Q8TF72 TPT1-202ENST00000379055 948 ntTSL 2 BASIC25.25■■□□□ 1.63
SHROOM3Q8TF72 BCAP31-207ENST00000458587 1810 ntTSL 1 (best) BASIC25.25■■□□□ 1.63
SHROOM3Q8TF72 AJAP1-201ENST00000378190 2383 ntAPPRIS P1 TSL 5 BASIC25.25■■□□□ 1.63
SHROOM3Q8TF72 DNMT3A-206ENST00000406659 1775 ntTSL 1 (best) BASIC25.24■■□□□ 1.63
SHROOM3Q8TF72 BANF1-208ENST00000533166 1135 ntAPPRIS P1 TSL 2 BASIC25.24■■□□□ 1.63
SHROOM3Q8TF72 KAZN-207ENST00000503743 1475 ntTSL 1 (best) BASIC25.24■■□□□ 1.63
SHROOM3Q8TF72 GATA2-AS1-202ENST00000468377 1578 ntTSL 2 BASIC25.24■■□□□ 1.63
SHROOM3Q8TF72 PRKAR1B-203ENST00000403562 1917 ntAPPRIS P1 TSL 1 (best) BASIC25.24■■□□□ 1.63
SHROOM3Q8TF72 CACNG7-203ENST00000391767 2688 ntAPPRIS P1 TSL 5 BASIC25.23■■□□□ 1.63
SHROOM3Q8TF72 FUS-202ENST00000380244 1818 ntAPPRIS ALT2 TSL 1 (best) BASIC25.23■■□□□ 1.63
SHROOM3Q8TF72 VEGFA-202ENST00000324450 954 ntTSL 1 (best) BASIC25.23■■□□□ 1.63
SHROOM3Q8TF72 VEGFA-203ENST00000372055 1286 ntTSL 1 (best) BASIC25.23■■□□□ 1.63
SHROOM3Q8TF72 VEGFA-208ENST00000417285 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC25.23■■□□□ 1.63
SHROOM3Q8TF72 VEGFA-213ENST00000482630 1146 ntTSL 1 (best) BASIC25.23■■□□□ 1.63
SHROOM3Q8TF72 NEURL1B-203ENST00000522853 1263 ntTSL 1 (best) BASIC25.23■■□□□ 1.63
SHROOM3Q8TF72 VEGFA-227ENST00000615393 984 ntTSL 1 (best) BASIC25.23■■□□□ 1.63
SHROOM3Q8TF72 VEGFA-228ENST00000617771 1116 ntTSL 1 (best) BASIC25.23■■□□□ 1.63
SHROOM3Q8TF72 VEGFA-229ENST00000621747 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC25.23■■□□□ 1.63
SHROOM3Q8TF72 VEGFA-230ENST00000640482 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC25.23■■□□□ 1.63
SHROOM3Q8TF72 VEGFA-232ENST00000640653 1170 ntAPPRIS ALT2 TSL 1 (best) BASIC25.23■■□□□ 1.63
SHROOM3Q8TF72 C12orf75-201ENST00000443585 1366 ntAPPRIS P1 TSL 2 BASIC25.23■■□□□ 1.63
SHROOM3Q8TF72 NXPH4-201ENST00000349394 1804 ntAPPRIS P1 TSL 1 (best) BASIC25.23■■□□□ 1.63
SHROOM3Q8TF72 LCNL1-201ENST00000408973 1839 ntAPPRIS P1 TSL 2 BASIC25.23■■□□□ 1.63
SHROOM3Q8TF72 AC142472.1-201ENST00000612013 1741 ntBASIC25.22■■□□□ 1.63
SHROOM3Q8TF72 PKIG-207ENST00000372894 1191 ntAPPRIS P1 TSL 1 (best) BASIC25.22■■□□□ 1.63
SHROOM3Q8TF72 IZUMO4-202ENST00000395301 1021 ntAPPRIS ALT2 TSL 1 (best) BASIC25.22■■□□□ 1.63
SHROOM3Q8TF72 AL157400.5-201ENST00000507624 621 ntBASIC25.22■■□□□ 1.63
Retrieved 100 of 98,524 protein–RNA pairs in 62 ms