Protein–RNA interactions for Protein: Q8K2I2

Cchcr1, Coiled-coil alpha-helical rod protein 1, mousemouse

Predictions only

Length 770 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cchcr1Q8K2I2 Henmt1-201ENSMUST00000059946 1998 ntAPPRIS P2 TSL 1 (best) BASIC26.57■■□□□ 1.84
Cchcr1Q8K2I2 Elf2-204ENSMUST00000108053 2611 ntTSL 1 (best) BASIC26.56■■□□□ 1.84
Cchcr1Q8K2I2 Esyt2-201ENSMUST00000100986 5560 ntAPPRIS P1 TSL 1 (best) BASIC26.56■■□□□ 1.84
Cchcr1Q8K2I2 Phf23-202ENSMUST00000101526 1706 ntAPPRIS ALT2 TSL 1 (best) BASIC26.56■■□□□ 1.84
Cchcr1Q8K2I2 Prph-201ENSMUST00000024249 1769 ntAPPRIS ALT2 TSL 1 (best) BASIC26.56■■□□□ 1.84
Cchcr1Q8K2I2 Capza2-201ENSMUST00000015877 2537 ntAPPRIS P1 TSL 1 (best) BASIC26.56■■□□□ 1.84
Cchcr1Q8K2I2 Cadps-201ENSMUST00000067491 5421 ntAPPRIS P4 TSL 1 (best) BASIC26.55■■□□□ 1.84
Cchcr1Q8K2I2 Purg-202ENSMUST00000078058 1795 ntTSL 1 (best) BASIC26.55■■□□□ 1.84
Cchcr1Q8K2I2 Homer3-203ENSMUST00000110124 2445 ntAPPRIS ALT1 TSL 5 BASIC26.55■■□□□ 1.84
Cchcr1Q8K2I2 Gm7432-201ENSMUST00000210343 879 ntBASIC26.54■■□□□ 1.84
Cchcr1Q8K2I2 Rexo2-210ENSMUST00000217037 609 ntTSL 3 BASIC26.54■■□□□ 1.84
Cchcr1Q8K2I2 Igfbp3-201ENSMUST00000020702 2421 ntAPPRIS P1 TSL 1 (best) BASIC26.53■■□□□ 1.84
Cchcr1Q8K2I2 Fus-204ENSMUST00000121616 1102 ntTSL 1 (best) BASIC26.53■■□□□ 1.84
Cchcr1Q8K2I2 1700084E18Rik-202ENSMUST00000205624 729 ntBASIC26.53■■□□□ 1.84
Cchcr1Q8K2I2 Pdpk1-203ENSMUST00000115407 1730 ntTSL 5 BASIC26.53■■□□□ 1.84
Cchcr1Q8K2I2 Kcnj6-201ENSMUST00000095873 1773 ntTSL 1 (best) BASIC26.53■■□□□ 1.84
Cchcr1Q8K2I2 Kdf1-202ENSMUST00000105901 1699 ntAPPRIS P2 TSL 1 (best) BASIC26.52■■□□□ 1.84
Cchcr1Q8K2I2 Eid1-201ENSMUST00000164756 1691 ntAPPRIS P1 BASIC26.52■■□□□ 1.84
Cchcr1Q8K2I2 Armc10-201ENSMUST00000072896 2221 ntAPPRIS P1 TSL 1 (best) BASIC26.52■■□□□ 1.84
Cchcr1Q8K2I2 Zfp768-202ENSMUST00000205266 2513 ntAPPRIS ALT2 TSL 5 BASIC26.51■■□□□ 1.84
Cchcr1Q8K2I2 Spsb3-202ENSMUST00000068508 2004 ntTSL 1 (best) BASIC26.51■■□□□ 1.83
Cchcr1Q8K2I2 AC061963.1-201ENSMUST00000213180 1765 ntTSL 5 BASIC26.51■■□□□ 1.83
Cchcr1Q8K2I2 Prr5-202ENSMUST00000171460 1719 ntAPPRIS ALT2 TSL 1 (best) BASIC26.51■■□□□ 1.83
Cchcr1Q8K2I2 Gimap1-205ENSMUST00000204168 1469 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.83
Cchcr1Q8K2I2 Gm9812-201ENSMUST00000061934 968 ntBASIC26.51■■□□□ 1.83
Cchcr1Q8K2I2 Usp12-201ENSMUST00000085614 4327 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.83
Cchcr1Q8K2I2 Pdgfb-201ENSMUST00000000500 2918 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.83
Cchcr1Q8K2I2 Nog-201ENSMUST00000061728 1695 ntAPPRIS P1 BASIC26.5■■□□□ 1.83
Cchcr1Q8K2I2 Mta3-204ENSMUST00000112352 2674 ntAPPRIS ALT2 TSL 1 (best) BASIC26.5■■□□□ 1.83
Cchcr1Q8K2I2 Dtnbp1-202ENSMUST00000110128 1305 ntAPPRIS ALT2 TSL 5 BASIC26.5■■□□□ 1.83
Cchcr1Q8K2I2 Zfyve21-201ENSMUST00000021714 1308 ntAPPRIS P2 TSL 1 (best) BASIC26.5■■□□□ 1.83
Cchcr1Q8K2I2 Ptx3-201ENSMUST00000029421 1898 ntAPPRIS P1 TSL 1 (best) BASIC26.5■■□□□ 1.83
Cchcr1Q8K2I2 Manf-202ENSMUST00000159283 2247 ntAPPRIS P1 TSL 1 (best) BASIC26.5■■□□□ 1.83
Cchcr1Q8K2I2 Gm11542-201ENSMUST00000126480 1511 ntTSL 1 (best) BASIC26.49■■□□□ 1.83
Cchcr1Q8K2I2 Agpat5-201ENSMUST00000033847 2841 ntAPPRIS ALT2 TSL 1 (best) BASIC26.49■■□□□ 1.83
Cchcr1Q8K2I2 Adgrb1-202ENSMUST00000170845 2704 ntTSL 5 BASIC26.49■■□□□ 1.83
Cchcr1Q8K2I2 Ankrd49-205ENSMUST00000216037 1037 ntAPPRIS P1 TSL 2 BASIC26.49■■□□□ 1.83
Cchcr1Q8K2I2 Traf3ip1-203ENSMUST00000189341 2257 ntAPPRIS ALT2 TSL 5 BASIC26.48■■□□□ 1.83
Cchcr1Q8K2I2 Rab43-202ENSMUST00000032135 1262 ntTSL 1 (best) BASIC26.48■■□□□ 1.83
Cchcr1Q8K2I2 Plpp5-201ENSMUST00000068916 1483 ntAPPRIS P1 TSL 1 (best) BASIC26.48■■□□□ 1.83
Cchcr1Q8K2I2 Ildr2-203ENSMUST00000192638 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC26.48■■□□□ 1.83
Cchcr1Q8K2I2 Kif1bp-206ENSMUST00000162525 2311 ntTSL 5 BASIC26.47■■□□□ 1.83
Cchcr1Q8K2I2 Rmnd5a-201ENSMUST00000002292 6165 ntAPPRIS P1 TSL 1 (best) BASIC26.47■■□□□ 1.83
Cchcr1Q8K2I2 Krtap17-1-201ENSMUST00000105049 761 ntAPPRIS P1 BASIC26.47■■□□□ 1.83
Cchcr1Q8K2I2 6330420H09Rik-201ENSMUST00000211371 1316 ntTSL 1 (best) BASIC26.46■■□□□ 1.83
Cchcr1Q8K2I2 Izumo4-205ENSMUST00000218184 1196 ntAPPRIS P1 TSL 2 BASIC26.46■■□□□ 1.83
Cchcr1Q8K2I2 Tceal3-201ENSMUST00000060904 1116 ntAPPRIS P1 TSL 1 (best) BASIC26.46■■□□□ 1.83
Cchcr1Q8K2I2 Emc10-202ENSMUST00000118808 1872 ntAPPRIS P2 TSL 1 (best) BASIC26.46■■□□□ 1.83
Cchcr1Q8K2I2 Acot3-202ENSMUST00000120927 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC26.46■■□□□ 1.83
Cchcr1Q8K2I2 Luc7l3-203ENSMUST00000107821 2050 ntAPPRIS P1 TSL 5 BASIC26.46■■□□□ 1.83
Cchcr1Q8K2I2 Lrrc14-201ENSMUST00000036423 2093 ntAPPRIS P1 TSL 1 (best) BASIC26.46■■□□□ 1.83
Cchcr1Q8K2I2 Syce2-202ENSMUST00000136026 1686 ntAPPRIS P3 TSL 1 (best) BASIC26.45■■□□□ 1.82
Cchcr1Q8K2I2 B3gat1-203ENSMUST00000159799 2021 ntTSL 1 (best) BASIC26.45■■□□□ 1.82
Cchcr1Q8K2I2 Hspb1-202ENSMUST00000111155 930 ntTSL 1 (best) BASIC26.45■■□□□ 1.82
Cchcr1Q8K2I2 D16Ertd472e-201ENSMUST00000114218 1271 ntAPPRIS P1 TSL 5 BASIC26.45■■□□□ 1.82
Cchcr1Q8K2I2 Gm11599-201ENSMUST00000118720 878 ntBASIC26.45■■□□□ 1.82
Cchcr1Q8K2I2 Mir3960-201ENSMUST00000198213 73 ntBASIC26.45■■□□□ 1.82
Cchcr1Q8K2I2 AC153911.1-201ENSMUST00000220378 758 ntBASIC26.45■■□□□ 1.82
Cchcr1Q8K2I2 AC154454.1-201ENSMUST00000225253 216 ntBASIC26.45■■□□□ 1.82
Cchcr1Q8K2I2 Lsm14b-201ENSMUST00000055485 2534 ntAPPRIS P1 TSL 1 (best) BASIC26.45■■□□□ 1.82
Cchcr1Q8K2I2 Pan3-201ENSMUST00000031651 5048 ntAPPRIS P2 TSL 5 BASIC26.45■■□□□ 1.82
Cchcr1Q8K2I2 Ubl3-204ENSMUST00000201595 2064 ntAPPRIS P1 TSL 2 BASIC26.45■■□□□ 1.82
Cchcr1Q8K2I2 Hook1-201ENSMUST00000030306 5517 ntAPPRIS P1 TSL 1 (best) BASIC26.45■■□□□ 1.82
Cchcr1Q8K2I2 Kcnc3-206ENSMUST00000208651 2728 ntAPPRIS ALT2 TSL 5 BASIC26.45■■□□□ 1.82
Cchcr1Q8K2I2 Fads2-201ENSMUST00000025567 1508 ntAPPRIS P1 TSL 1 (best) BASIC26.44■■□□□ 1.82
Cchcr1Q8K2I2 Flot2-201ENSMUST00000072289 2621 ntAPPRIS P2 TSL 1 (best) BASIC26.44■■□□□ 1.82
Cchcr1Q8K2I2 Trafd1-201ENSMUST00000042312 2503 ntAPPRIS P4 TSL 1 (best) BASIC26.43■■□□□ 1.82
Cchcr1Q8K2I2 Strn3-202ENSMUST00000169503 2791 ntTSL 1 (best) BASIC26.43■■□□□ 1.82
Cchcr1Q8K2I2 AC122317.2-201ENSMUST00000218708 1248 ntBASIC26.43■■□□□ 1.82
Cchcr1Q8K2I2 4930597O21Rik-201ENSMUST00000065878 984 ntTSL 1 (best) BASIC26.43■■□□□ 1.82
Cchcr1Q8K2I2 Tmem221-201ENSMUST00000052072 1604 ntAPPRIS P1 TSL 1 (best) BASIC26.43■■□□□ 1.82
Cchcr1Q8K2I2 Gm12818-201ENSMUST00000117562 1349 ntBASIC26.42■■□□□ 1.82
Cchcr1Q8K2I2 H3f3aos-201ENSMUST00000097448 2905 ntBASIC26.42■■□□□ 1.82
Cchcr1Q8K2I2 Fancf-201ENSMUST00000169357 1691 ntAPPRIS P1 BASIC26.41■■□□□ 1.82
Cchcr1Q8K2I2 Ube2h-201ENSMUST00000094543 975 ntTSL 1 (best) BASIC26.41■■□□□ 1.82
Cchcr1Q8K2I2 Arhgap9-201ENSMUST00000069548 1782 ntAPPRIS P2 TSL 1 (best) BASIC26.41■■□□□ 1.82
Cchcr1Q8K2I2 Nsun2-208ENSMUST00000176485 2408 ntAPPRIS ALT2 TSL 5 BASIC26.4■■□□□ 1.82
Cchcr1Q8K2I2 Rab3il1-202ENSMUST00000117641 2004 ntAPPRIS ALT2 TSL 1 (best) BASIC26.4■■□□□ 1.82
Cchcr1Q8K2I2 Ccnl2-201ENSMUST00000030944 2442 ntAPPRIS P1 TSL 1 (best) BASIC26.4■■□□□ 1.82
Cchcr1Q8K2I2 Wwc1-201ENSMUST00000018993 4531 ntAPPRIS P1 TSL 1 (best) BASIC26.4■■□□□ 1.82
Cchcr1Q8K2I2 Zgpat-202ENSMUST00000108807 2072 ntAPPRIS P1 TSL 1 (best) BASIC26.39■■□□□ 1.82
Cchcr1Q8K2I2 A830010M20Rik-207ENSMUST00000162298 1408 ntTSL 5 BASIC26.39■■□□□ 1.81
Cchcr1Q8K2I2 Chst14-201ENSMUST00000099546 2090 ntAPPRIS P1 BASIC26.38■■□□□ 1.81
Cchcr1Q8K2I2 Lrrc59-201ENSMUST00000021239 2837 ntAPPRIS P1 TSL 1 (best) BASIC26.38■■□□□ 1.81
Cchcr1Q8K2I2 Aspscr1-203ENSMUST00000106158 1690 ntTSL 5 BASIC26.38■■□□□ 1.81
Cchcr1Q8K2I2 Rp9-201ENSMUST00000034763 1134 ntAPPRIS P2 TSL 1 (best) BASIC26.37■■□□□ 1.81
Cchcr1Q8K2I2 St7-207ENSMUST00000115418 1678 ntTSL 5 BASIC26.37■■□□□ 1.81
Cchcr1Q8K2I2 AC164433.2-201ENSMUST00000226346 1701 ntBASIC26.36■■□□□ 1.81
Cchcr1Q8K2I2 Slc1a5-201ENSMUST00000108496 2764 ntAPPRIS P1 TSL 1 (best) BASIC26.36■■□□□ 1.81
Cchcr1Q8K2I2 Gtpbp2-201ENSMUST00000024748 2966 ntAPPRIS P1 TSL 1 (best) BASIC26.36■■□□□ 1.81
Cchcr1Q8K2I2 Mrps15-201ENSMUST00000030675 937 ntAPPRIS P1 TSL 1 (best) BASIC26.36■■□□□ 1.81
Cchcr1Q8K2I2 Slc16a11-207ENSMUST00000136328 1403 ntTSL 5 BASIC26.36■■□□□ 1.81
Cchcr1Q8K2I2 Med25-205ENSMUST00000207278 2287 ntTSL 1 (best) BASIC26.36■■□□□ 1.81
Cchcr1Q8K2I2 Opn3-201ENSMUST00000027809 1913 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
Cchcr1Q8K2I2 Tirap-207ENSMUST00000177129 2366 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
Cchcr1Q8K2I2 Arhgef25-205ENSMUST00000218654 2475 ntTSL 5 BASIC26.34■■□□□ 1.81
Cchcr1Q8K2I2 Tsen34-201ENSMUST00000038521 1365 ntAPPRIS P1 TSL 5 BASIC26.34■■□□□ 1.81
Cchcr1Q8K2I2 Krt10-201ENSMUST00000103131 2094 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
Cchcr1Q8K2I2 Iars2-202ENSMUST00000110974 2431 ntTSL 1 (best) BASIC26.34■■□□□ 1.81
Cchcr1Q8K2I2 Hist2h3c1-201ENSMUST00000176059 1820 ntAPPRIS P1 BASIC26.34■■□□□ 1.81
Retrieved 100 of 76,532 protein–RNA pairs in 216.2 ms