Protein–RNA interactions for Protein: Q8IV63

VRK3, Inactive serine/threonine-protein kinase VRK3, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3Q8IV63 ABHD12-202ENST00000376542 1725 ntTSL 1 (best) BASIC24.33■■□□□ 1.49
VRK3Q8IV63 TAF10-201ENST00000299424 1215 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
VRK3Q8IV63 BAX-202ENST00000345358 793 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
VRK3Q8IV63 FAM168B-201ENST00000389915 944 ntAPPRIS P1 TSL 3 BASIC24.33■■□□□ 1.49
VRK3Q8IV63 HOXD-AS2-201ENST00000426965 927 ntTSL 1 (best) BASIC24.33■■□□□ 1.49
VRK3Q8IV63 RPARP-AS1-205ENST00000596045 431 ntTSL 3 BASIC24.33■■□□□ 1.49
VRK3Q8IV63 AKAP8L-208ENST00000595465 1933 ntTSL 2 BASIC24.33■■□□□ 1.49
VRK3Q8IV63 CENPV-201ENST00000299736 1165 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
VRK3Q8IV63 HSD17B12-202ENST00000395700 994 ntTSL 1 (best) BASIC24.32■■□□□ 1.48
VRK3Q8IV63 AC016595.1-201ENST00000559410 383 ntTSL 3 BASIC24.32■■□□□ 1.48
VRK3Q8IV63 MTMR1-202ENST00000370390 2755 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
VRK3Q8IV63 CCDC136-206ENST00000464832 1720 ntAPPRIS ALT2 TSL 5 BASIC24.32■■□□□ 1.48
VRK3Q8IV63 CRTAP-202ENST00000449224 1811 ntAPPRIS ALT2 TSL 2 BASIC24.31■■□□□ 1.48
VRK3Q8IV63 ROM1-201ENST00000278833 1878 ntAPPRIS P2 TSL 1 (best) BASIC24.31■■□□□ 1.48
VRK3Q8IV63 MAP4K3-211ENST00000484274 407 ntTSL 2 BASIC24.31■■□□□ 1.48
VRK3Q8IV63 KCTD15-206ENST00000588881 1211 ntAPPRIS P1 TSL 2 BASIC24.31■■□□□ 1.48
VRK3Q8IV63 SRP68-213ENST00000629930 165 ntTSL 5 BASIC24.31■■□□□ 1.48
VRK3Q8IV63 FKBP1A-204ENST00000400137 1622 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
VRK3Q8IV63 NKPD1-202ENST00000589776 1950 ntAPPRIS P1 BASIC24.31■■□□□ 1.48
VRK3Q8IV63 C12orf75-201ENST00000443585 1366 ntAPPRIS P1 TSL 2 BASIC24.3■■□□□ 1.48
VRK3Q8IV63 LDLRAD3-203ENST00000528989 1879 ntTSL 1 (best) BASIC24.3■■□□□ 1.48
VRK3Q8IV63 AL359258.2-201ENST00000564063 1566 ntBASIC24.3■■□□□ 1.48
VRK3Q8IV63 PKM-203ENST00000389093 2279 ntTSL 5 BASIC24.3■■□□□ 1.48
VRK3Q8IV63 PDK1-202ENST00000392571 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC24.3■■□□□ 1.48
VRK3Q8IV63 PPAN-202ENST00000393793 1575 ntTSL 5 BASIC24.29■■□□□ 1.48
VRK3Q8IV63 PKIG-207ENST00000372894 1191 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
VRK3Q8IV63 MDFIC-203ENST00000423503 474 ntTSL 1 (best) BASIC24.29■■□□□ 1.48
VRK3Q8IV63 KLHL21-203ENST00000463043 667 ntTSL 5 BASIC24.29■■□□□ 1.48
VRK3Q8IV63 CYB5R3-201ENST00000352397 2124 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
VRK3Q8IV63 NPB-202ENST00000573081 2154 ntAPPRIS ALT2 BASIC24.29■■□□□ 1.48
VRK3Q8IV63 NRARP-201ENST00000356628 1770 ntAPPRIS P1 BASIC24.29■■□□□ 1.48
VRK3Q8IV63 ZDHHC16-207ENST00000393760 2014 ntAPPRIS P4 TSL 1 (best) BASIC24.28■■□□□ 1.48
VRK3Q8IV63 CDPF1-201ENST00000314567 1875 ntAPPRIS P2 TSL 1 (best) BASIC24.28■■□□□ 1.48
VRK3Q8IV63 RHBDD2-202ENST00000318622 1878 ntTSL 2 BASIC24.28■■□□□ 1.48
VRK3Q8IV63 POU3F3-201ENST00000361360 3064 ntAPPRIS P1 BASIC24.28■■□□□ 1.48
VRK3Q8IV63 CBWD5-202ENST00000377384 1347 ntTSL 1 (best) BASIC24.28■■□□□ 1.48
VRK3Q8IV63 RNF175-201ENST00000347063 1604 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
VRK3Q8IV63 ZBTB25-202ENST00000555220 1440 ntTSL 1 (best) BASIC24.27■■□□□ 1.48
VRK3Q8IV63 SOD3-201ENST00000382120 1526 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
VRK3Q8IV63 RCOR3-202ENST00000367006 2525 ntTSL 1 (best) BASIC24.27■■□□□ 1.48
VRK3Q8IV63 ZDHHC16-204ENST00000370842 1877 ntAPPRIS ALT1 TSL 5 BASIC24.26■■□□□ 1.47
VRK3Q8IV63 TPT1-202ENST00000379055 948 ntTSL 2 BASIC24.26■■□□□ 1.47
VRK3Q8IV63 NREP-216ENST00000508870 540 ntAPPRIS P1 TSL 4 BASIC24.26■■□□□ 1.47
VRK3Q8IV63 R3HDM4-208ENST00000626716 138 ntTSL 5 BASIC24.26■■□□□ 1.47
VRK3Q8IV63 GATA2-AS1-202ENST00000468377 1578 ntTSL 2 BASIC24.25■■□□□ 1.47
VRK3Q8IV63 IRAK1-205ENST00000429936 2127 ntTSL 5 BASIC24.25■■□□□ 1.47
VRK3Q8IV63 DAZAP1-202ENST00000336761 2290 ntTSL 5 BASIC24.24■■□□□ 1.47
VRK3Q8IV63 FLJ37453-201ENST00000317122 2473 ntTSL 2 BASIC24.24■■□□□ 1.47
VRK3Q8IV63 TTC39C-209ENST00000584250 1048 ntTSL 1 (best) BASIC24.24■■□□□ 1.47
VRK3Q8IV63 BCL7B-202ENST00000411832 1458 ntTSL 2 BASIC24.24■■□□□ 1.47
VRK3Q8IV63 PQLC3-201ENST00000295083 1830 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
VRK3Q8IV63 CCKBR-201ENST00000334619 2121 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
VRK3Q8IV63 IZUMO4-202ENST00000395301 1021 ntAPPRIS ALT2 TSL 1 (best) BASIC24.23■■□□□ 1.47
VRK3Q8IV63 CADPS-215ENST00000490353 2669 ntTSL 5 BASIC24.22■■□□□ 1.47
VRK3Q8IV63 MRAP2-201ENST00000257776 2153 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.47
VRK3Q8IV63 CLDND1-226ENST00000513287 999 ntAPPRIS P1 TSL 2 BASIC24.22■■□□□ 1.47
VRK3Q8IV63 RTN2-208ENST00000590526 2357 ntTSL 5 BASIC24.22■■□□□ 1.47
VRK3Q8IV63 CNNM2-201ENST00000369875 2059 ntTSL 1 (best) BASIC24.22■■□□□ 1.47
VRK3Q8IV63 AP004609.3-201ENST00000610705 1884 ntBASIC24.21■■□□□ 1.47
VRK3Q8IV63 MRPL51-201ENST00000229238 1234 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
VRK3Q8IV63 AC060814.1-201ENST00000554326 538 ntBASIC24.21■■□□□ 1.47
VRK3Q8IV63 TBX2-AS1-202ENST00000589814 539 ntTSL 3 BASIC24.21■■□□□ 1.47
VRK3Q8IV63 SLC35A2-207ENST00000445167 1739 ntTSL 1 (best) BASIC24.21■■□□□ 1.47
VRK3Q8IV63 SNTB1-202ENST00000517992 2273 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
VRK3Q8IV63 ST7L-206ENST00000369666 1815 ntTSL 1 (best) BASIC24.2■■□□□ 1.46
VRK3Q8IV63 ADAMTSL5-202ENST00000395467 1533 ntTSL 5 BASIC24.2■■□□□ 1.46
VRK3Q8IV63 NAPA-201ENST00000263354 1839 ntAPPRIS P1 TSL 1 (best) BASIC24.19■■□□□ 1.46
VRK3Q8IV63 C11orf80-204ENST00000525908 2135 ntAPPRIS P3 TSL 2 BASIC24.19■■□□□ 1.46
VRK3Q8IV63 TMEM114-202ENST00000568335 899 ntTSL 3 BASIC24.19■■□□□ 1.46
VRK3Q8IV63 FLT1-202ENST00000539099 1911 ntTSL 1 (best) BASIC24.19■■□□□ 1.46
VRK3Q8IV63 PROCA1-201ENST00000301039 1566 ntTSL 1 (best) BASIC24.18■■□□□ 1.46
VRK3Q8IV63 AC126177.7-201ENST00000547904 679 ntBASIC24.18■■□□□ 1.46
VRK3Q8IV63 FAM107B-205ENST00000378467 2374 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
VRK3Q8IV63 PHF23-205ENST00000571362 1768 ntTSL 2 BASIC24.18■■□□□ 1.46
VRK3Q8IV63 KAZN-207ENST00000503743 1475 ntTSL 1 (best) BASIC24.18■■□□□ 1.46
VRK3Q8IV63 PMS1-220ENST00000618056 1468 ntTSL 5 BASIC24.18■■□□□ 1.46
VRK3Q8IV63 CAMK1D-203ENST00000615792 1725 ntTSL 5 BASIC24.18■■□□□ 1.46
VRK3Q8IV63 TIMM29-201ENST00000270502 1425 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
VRK3Q8IV63 FGF20-201ENST00000180166 1688 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
VRK3Q8IV63 TTC3-225ENST00000540756 2025 ntTSL 2 BASIC24.17■■□□□ 1.46
VRK3Q8IV63 DNMT3A-206ENST00000406659 1775 ntTSL 1 (best) BASIC24.17■■□□□ 1.46
VRK3Q8IV63 BLOC1S3-202ENST00000587722 732 ntAPPRIS P1 BASIC24.17■■□□□ 1.46
VRK3Q8IV63 CTSZ-201ENST00000217131 1495 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
VRK3Q8IV63 KANSL2-215ENST00000553086 1830 ntTSL 5 BASIC24.17■■□□□ 1.46
VRK3Q8IV63 PEA15-201ENST00000360472 2471 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
VRK3Q8IV63 PTPMT1-203ENST00000426530 1014 ntTSL 1 (best) BASIC24.16■■□□□ 1.46
VRK3Q8IV63 CEP120-209ENST00000515110 606 ntTSL 3 BASIC24.16■■□□□ 1.46
VRK3Q8IV63 EIF5A-208ENST00000573542 1089 ntAPPRIS P1 TSL 2 BASIC24.16■■□□□ 1.46
VRK3Q8IV63 AC022413.1-201ENST00000624602 984 ntBASIC24.16■■□□□ 1.46
VRK3Q8IV63 BCAP31-207ENST00000458587 1810 ntTSL 1 (best) BASIC24.16■■□□□ 1.46
VRK3Q8IV63 AC142472.1-201ENST00000612013 1741 ntBASIC24.15■■□□□ 1.46
VRK3Q8IV63 KCNJ4-201ENST00000303592 2065 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
VRK3Q8IV63 CABP1-202ENST00000316803 1658 ntTSL 1 (best) BASIC24.15■■□□□ 1.46
VRK3Q8IV63 NXPH3-201ENST00000328741 2179 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
VRK3Q8IV63 AL157400.5-201ENST00000507624 621 ntBASIC24.15■■□□□ 1.46
VRK3Q8IV63 TSGA13-204ENST00000456951 2046 ntAPPRIS P2 TSL 2 BASIC24.14■■□□□ 1.45
VRK3Q8IV63 DHFR-203ENST00000505337 1719 ntAPPRIS P1 TSL 2 BASIC24.14■■□□□ 1.45
VRK3Q8IV63 TSR3-201ENST00000007390 1243 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.45
VRK3Q8IV63 C19orf47-202ENST00000392035 2126 ntAPPRIS ALT2 TSL 1 (best) BASIC24.14■■□□□ 1.45
VRK3Q8IV63 AL359504.2-201ENST00000605506 1601 ntBASIC24.13■■□□□ 1.45
Retrieved 100 of 98,524 protein–RNA pairs in 167.6 ms