Protein–RNA interactions for Protein: Q8BY87

Usp47, Ubiquitin carboxyl-terminal hydrolase 47, mousemouse

Predictions only

Length 1,376 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp47Q8BY87 Zfp703-201ENSMUST00000127097 587 ntTSL 2 BASIC32.41■■■□□ 2.78
Usp47Q8BY87 Usf1-210ENSMUST00000167546 1822 ntAPPRIS P1 TSL 5 BASIC32.4■■■□□ 2.78
Usp47Q8BY87 Spsb3-205ENSMUST00000120943 1949 ntAPPRIS ALT2 TSL 1 (best) BASIC32.4■■■□□ 2.78
Usp47Q8BY87 Ppp2r3d-202ENSMUST00000180270 450 ntTSL 1 (best) BASIC32.4■■■□□ 2.78
Usp47Q8BY87 Gm43573-201ENSMUST00000196445 570 ntTSL 5 BASIC32.4■■■□□ 2.78
Usp47Q8BY87 Scn1b-201ENSMUST00000098548 1573 ntAPPRIS P1 TSL 1 (best) BASIC32.39■■■□□ 2.78
Usp47Q8BY87 Nudc-201ENSMUST00000030665 1316 ntAPPRIS P1 TSL 1 (best) BASIC32.39■■■□□ 2.78
Usp47Q8BY87 Erf-202ENSMUST00000116343 690 ntAPPRIS ALT2 TSL 2 BASIC32.39■■■□□ 2.78
Usp47Q8BY87 Hnrnpk-210ENSMUST00000176558 1053 ntTSL 2 BASIC32.39■■■□□ 2.78
Usp47Q8BY87 Rnf39-201ENSMUST00000040498 1579 ntAPPRIS P1 TSL 1 (best) BASIC32.38■■■□□ 2.77
Usp47Q8BY87 Nudt3-203ENSMUST00000114886 996 ntTSL 2 BASIC32.37■■■□□ 2.77
Usp47Q8BY87 Cyp2r1-202ENSMUST00000119712 917 ntTSL 5 BASIC32.37■■■□□ 2.77
Usp47Q8BY87 Dbndd2-202ENSMUST00000069385 1658 ntAPPRIS P1 TSL 1 (best) BASIC32.37■■■□□ 2.77
Usp47Q8BY87 Tmem106c-201ENSMUST00000064200 1635 ntAPPRIS P1 TSL 1 (best) BASIC32.37■■■□□ 2.77
Usp47Q8BY87 Ica1-201ENSMUST00000038403 2075 ntAPPRIS P2 TSL 1 (best) BASIC32.37■■■□□ 2.77
Usp47Q8BY87 Foxa2-202ENSMUST00000109964 2070 ntAPPRIS ALT2 TSL 1 (best) BASIC32.36■■■□□ 2.77
Usp47Q8BY87 Ryk-201ENSMUST00000035142 2852 ntAPPRIS ALT2 TSL 1 (best) BASIC32.35■■■□□ 2.77
Usp47Q8BY87 Gm44428-201ENSMUST00000204474 874 ntBASIC32.34■■■□□ 2.77
Usp47Q8BY87 Gm7276-201ENSMUST00000097520 1252 ntAPPRIS P1 BASIC32.34■■■□□ 2.77
Usp47Q8BY87 Tlx2-202ENSMUST00000174674 1514 ntTSL 1 (best) BASIC32.34■■■□□ 2.77
Usp47Q8BY87 Rnaset2a-201ENSMUST00000097420 1259 ntAPPRIS P1 TSL 1 (best) BASIC32.33■■■□□ 2.77
Usp47Q8BY87 Rpl35-201ENSMUST00000080861 946 ntAPPRIS P1 TSL 1 (best) BASIC32.32■■■□□ 2.77
Usp47Q8BY87 Ppa2-203ENSMUST00000122334 1368 ntAPPRIS ALT2 TSL 1 (best) BASIC32.32■■■□□ 2.76
Usp47Q8BY87 Prr5-201ENSMUST00000065499 1830 ntAPPRIS P3 TSL 1 (best) BASIC32.32■■■□□ 2.76
Usp47Q8BY87 Tmem11-201ENSMUST00000062677 1457 ntAPPRIS P1 TSL 1 (best) BASIC32.32■■■□□ 2.76
Usp47Q8BY87 Dapk2-201ENSMUST00000034944 1772 ntAPPRIS P1 TSL 1 (best) BASIC32.32■■■□□ 2.76
Usp47Q8BY87 Trnau1ap-203ENSMUST00000105962 961 ntTSL 5 BASIC32.32■■■□□ 2.76
Usp47Q8BY87 A030014E15Rik-201ENSMUST00000223400 796 ntAPPRIS P1 BASIC32.32■■■□□ 2.76
Usp47Q8BY87 Fam174a-201ENSMUST00000059975 2112 ntAPPRIS P1 TSL 1 (best) BASIC32.31■■■□□ 2.76
Usp47Q8BY87 Prr5-202ENSMUST00000171460 1719 ntAPPRIS ALT2 TSL 1 (best) BASIC32.3■■■□□ 2.76
Usp47Q8BY87 Tmem170b-202ENSMUST00000221694 602 ntTSL 3 BASIC32.3■■■□□ 2.76
Usp47Q8BY87 Fam212b-202ENSMUST00000098273 1868 ntAPPRIS ALT2 TSL 1 (best) BASIC32.28■■■□□ 2.76
Usp47Q8BY87 Tfeb-202ENSMUST00000086932 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC32.28■■■□□ 2.76
Usp47Q8BY87 Gm20458-201ENSMUST00000164863 1369 ntAPPRIS P1 TSL 5 BASIC32.28■■■□□ 2.76
Usp47Q8BY87 D17Wsu92e-201ENSMUST00000075076 1470 ntTSL 1 (best) BASIC32.28■■■□□ 2.76
Usp47Q8BY87 Ddx43-201ENSMUST00000113367 2207 ntAPPRIS P1 TSL 5 BASIC32.27■■■□□ 2.76
Usp47Q8BY87 Wnt5b-203ENSMUST00000119369 2339 ntTSL 1 (best) BASIC32.27■■■□□ 2.76
Usp47Q8BY87 Stambp-207ENSMUST00000206592 2152 ntAPPRIS P1 TSL 1 (best) BASIC32.27■■■□□ 2.76
Usp47Q8BY87 Ipmk-203ENSMUST00000121446 1492 ntAPPRIS ALT2 TSL 5 BASIC32.26■■■□□ 2.76
Usp47Q8BY87 Tead1-203ENSMUST00000084705 2543 ntAPPRIS ALT1 TSL 1 (best) BASIC32.25■■■□□ 2.75
Usp47Q8BY87 AC164433.2-201ENSMUST00000226346 1701 ntBASIC32.25■■■□□ 2.75
Usp47Q8BY87 B230377A18Rik-202ENSMUST00000192921 1364 ntBASIC32.24■■■□□ 2.75
Usp47Q8BY87 Gm20109-201ENSMUST00000180802 671 ntTSL 1 (best) BASIC32.24■■■□□ 2.75
Usp47Q8BY87 Smox-201ENSMUST00000028806 2270 ntAPPRIS P1 TSL 1 (best) BASIC32.24■■■□□ 2.75
Usp47Q8BY87 Slc16a11-207ENSMUST00000136328 1403 ntTSL 5 BASIC32.24■■■□□ 2.75
Usp47Q8BY87 Srd5a3-201ENSMUST00000031143 1747 ntAPPRIS P2 TSL 1 (best) BASIC32.23■■■□□ 2.75
Usp47Q8BY87 Egr4-201ENSMUST00000095759 2148 ntAPPRIS P1 TSL 1 (best) BASIC32.23■■■□□ 2.75
Usp47Q8BY87 Tmem150a-202ENSMUST00000132243 1478 ntTSL 5 BASIC32.23■■■□□ 2.75
Usp47Q8BY87 Rab4a-202ENSMUST00000118535 1419 ntAPPRIS P1 TSL 1 (best) BASIC32.22■■■□□ 2.75
Usp47Q8BY87 Kcnip2-208ENSMUST00000161886 693 ntAPPRIS P3 TSL 1 (best) BASIC32.21■■■□□ 2.75
Usp47Q8BY87 Ran-202ENSMUST00000111343 2423 ntAPPRIS P1 TSL 1 (best) BASIC32.21■■■□□ 2.75
Usp47Q8BY87 Gpr12-201ENSMUST00000036211 2219 ntAPPRIS P1 TSL 1 (best) BASIC32.21■■■□□ 2.75
Usp47Q8BY87 Gm27040-201ENSMUST00000181984 504 ntTSL 2 BASIC32.2■■■□□ 2.75
Usp47Q8BY87 Tmem235-201ENSMUST00000093905 1820 ntAPPRIS P1 TSL 5 BASIC32.2■■■□□ 2.75
Usp47Q8BY87 Pura-201ENSMUST00000051301 3145 ntAPPRIS P1 TSL 1 (best) BASIC32.2■■■□□ 2.75
Usp47Q8BY87 Mppe1-201ENSMUST00000073054 2007 ntAPPRIS P1 TSL 1 (best) BASIC32.2■■■□□ 2.75
Usp47Q8BY87 A330041J22Rik-201ENSMUST00000150367 1825 ntTSL 1 (best) BASIC32.2■■■□□ 2.74
Usp47Q8BY87 Cbr3-201ENSMUST00000039620 1170 ntAPPRIS P1 TSL 1 (best) BASIC32.19■■■□□ 2.74
Usp47Q8BY87 Hnrnpul1-202ENSMUST00000108401 1240 ntTSL 1 (best) BASIC32.18■■■□□ 2.74
Usp47Q8BY87 Tmem240-202ENSMUST00000147721 817 ntAPPRIS P1 TSL 1 (best) BASIC32.18■■■□□ 2.74
Usp47Q8BY87 Galr3-201ENSMUST00000058004 1245 ntAPPRIS P1 TSL 1 (best) BASIC32.18■■■□□ 2.74
Usp47Q8BY87 Mlycd-201ENSMUST00000098367 2128 ntAPPRIS P1 TSL 1 (best) BASIC32.17■■■□□ 2.74
Usp47Q8BY87 Lsm4-205ENSMUST00000210987 636 ntTSL 5 BASIC32.17■■■□□ 2.74
Usp47Q8BY87 Usp2-206ENSMUST00000176416 1486 ntAPPRIS ALT2 TSL 1 (best) BASIC32.16■■■□□ 2.74
Usp47Q8BY87 Ildr2-202ENSMUST00000192426 1238 ntTSL 1 (best) BASIC32.16■■■□□ 2.74
Usp47Q8BY87 Arhgap9-201ENSMUST00000069548 1782 ntAPPRIS P2 TSL 1 (best) BASIC32.16■■■□□ 2.74
Usp47Q8BY87 Porcn-201ENSMUST00000077595 1872 ntAPPRIS P4 TSL 1 (best) BASIC32.16■■■□□ 2.74
Usp47Q8BY87 Porcn-204ENSMUST00000089403 1854 ntAPPRIS ALT1 TSL 1 (best) BASIC32.16■■■□□ 2.74
Usp47Q8BY87 St7-207ENSMUST00000115418 1678 ntTSL 5 BASIC32.15■■■□□ 2.74
Usp47Q8BY87 Htatsf1-202ENSMUST00000114751 1128 ntTSL 1 (best) BASIC32.15■■■□□ 2.74
Usp47Q8BY87 Aldoa-214ENSMUST00000207534 741 ntAPPRIS P1 TSL 5 BASIC32.15■■■□□ 2.74
Usp47Q8BY87 Slc30a3-201ENSMUST00000031037 2089 ntAPPRIS P1 TSL 1 (best) BASIC32.15■■■□□ 2.74
Usp47Q8BY87 E130309D02Rik-201ENSMUST00000046418 2208 ntAPPRIS P1 TSL 1 (best) BASIC32.14■■■□□ 2.74
Usp47Q8BY87 Coro1b-201ENSMUST00000008893 1888 ntAPPRIS P1 TSL 1 (best) BASIC32.14■■■□□ 2.74
Usp47Q8BY87 Clk2-202ENSMUST00000121212 2154 ntAPPRIS P3 TSL 1 (best) BASIC32.14■■■□□ 2.74
Usp47Q8BY87 P3h4-201ENSMUST00000066489 2178 ntAPPRIS P2 TSL 1 (best) BASIC32.14■■■□□ 2.74
Usp47Q8BY87 Npas1-202ENSMUST00000210748 1959 ntAPPRIS P1 TSL 1 (best) BASIC32.13■■■□□ 2.73
Usp47Q8BY87 Gimap1-205ENSMUST00000204168 1469 ntAPPRIS P1 TSL 1 (best) BASIC32.13■■■□□ 2.73
Usp47Q8BY87 Tbc1d10a-206ENSMUST00000180088 1921 ntAPPRIS P2 TSL 1 (best) BASIC32.13■■■□□ 2.73
Usp47Q8BY87 Mbd3-203ENSMUST00000105348 1222 ntTSL 5 BASIC32.12■■■□□ 2.73
Usp47Q8BY87 Cldnd1-204ENSMUST00000162057 1540 ntAPPRIS P1 TSL 5 BASIC32.12■■■□□ 2.73
Usp47Q8BY87 Sft2d1-210ENSMUST00000154553 1049 ntAPPRIS P1 TSL 1 (best) BASIC32.11■■■□□ 2.73
Usp47Q8BY87 Gm42699-201ENSMUST00000198104 1657 ntBASIC32.11■■■□□ 2.73
Usp47Q8BY87 Gng3-201ENSMUST00000096259 1699 ntAPPRIS P1 TSL 1 (best) BASIC32.11■■■□□ 2.73
Usp47Q8BY87 Runx2-211ENSMUST00000162629 1607 ntAPPRIS ALT2 TSL 5 BASIC32.11■■■□□ 2.73
Usp47Q8BY87 Tmed2-201ENSMUST00000060226 2074 ntAPPRIS P1 TSL 1 (best) BASIC32.11■■■□□ 2.73
Usp47Q8BY87 Gm11542-201ENSMUST00000126480 1511 ntTSL 1 (best) BASIC32.1■■■□□ 2.73
Usp47Q8BY87 Gm10420-201ENSMUST00000121713 882 ntBASIC32.1■■■□□ 2.73
Usp47Q8BY87 Hpf1-204ENSMUST00000146863 531 ntTSL 2 BASIC32.09■■■□□ 2.73
Usp47Q8BY87 Gm11613-201ENSMUST00000134427 1971 ntTSL 1 (best) BASIC32.09■■■□□ 2.73
Usp47Q8BY87 Gorasp2-205ENSMUST00000133432 1941 ntAPPRIS ALT2 TSL 1 (best) BASIC32.08■■■□□ 2.73
Usp47Q8BY87 Timm50-201ENSMUST00000081946 1515 ntAPPRIS P1 TSL 1 (best) BASIC32.08■■■□□ 2.73
Usp47Q8BY87 Arhgdia-201ENSMUST00000067936 2150 ntAPPRIS P1 TSL 1 (best) BASIC32.08■■■□□ 2.73
Usp47Q8BY87 Mrpl23-201ENSMUST00000038675 692 ntAPPRIS P2 TSL 1 (best) BASIC32.07■■■□□ 2.73
Usp47Q8BY87 A830092H15Rik-201ENSMUST00000099182 1229 ntBASIC32.07■■■□□ 2.72
Usp47Q8BY87 Slc16a11-211ENSMUST00000171032 1754 ntAPPRIS P1 TSL 5 BASIC32.06■■■□□ 2.72
Usp47Q8BY87 Tmem158-201ENSMUST00000068140 1712 ntAPPRIS P1 BASIC32.06■■■□□ 2.72
Usp47Q8BY87 Dbp-201ENSMUST00000080885 1837 ntAPPRIS P1 TSL 1 (best) BASIC32.05■■■□□ 2.72
Usp47Q8BY87 Gm7199-201ENSMUST00000118327 1485 ntBASIC32.05■■■□□ 2.72
Usp47Q8BY87 Ntn5-203ENSMUST00000183120 1491 ntTSL 1 (best) BASIC32.05■■■□□ 2.72
Retrieved 100 of 76,532 protein–RNA pairs in 47.6 ms