Protein–RNA interactions for Protein: Q61245

Col11a1, Collagen alpha-1(XI) chain, mousemouse

Predictions only

Length 1,804 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col11a1Q61245 Cdc42ep5-201ENSMUST00000076831 1025 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
Col11a1Q61245 Nr2f6-201ENSMUST00000002466 2218 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
Col11a1Q61245 Dusp2-201ENSMUST00000028846 1617 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
Col11a1Q61245 Gal3st1-202ENSMUST00000078757 1749 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
Col11a1Q61245 Tmem11-201ENSMUST00000062677 1457 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
Col11a1Q61245 Ppia-202ENSMUST00000132846 1170 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
Col11a1Q61245 Acvr2b-201ENSMUST00000035093 1729 ntTSL 5 BASIC26.25■■□□□ 1.79
Col11a1Q61245 Gm13429-202ENSMUST00000128242 692 ntTSL 3 BASIC26.24■■□□□ 1.79
Col11a1Q61245 Ramp1-202ENSMUST00000165855 852 ntTSL 2 BASIC26.24■■□□□ 1.79
Col11a1Q61245 Gm37847-201ENSMUST00000192163 1497 ntBASIC26.24■■□□□ 1.79
Col11a1Q61245 Gm31748-201ENSMUST00000194938 1497 ntBASIC26.24■■□□□ 1.79
Col11a1Q61245 St7-202ENSMUST00000052113 2046 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
Col11a1Q61245 Hagh-201ENSMUST00000024974 1101 ntAPPRIS ALT1 TSL 5 BASIC26.23■■□□□ 1.79
Col11a1Q61245 Rab40c-201ENSMUST00000026826 2466 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
Col11a1Q61245 Fn1-208ENSMUST00000186940 1350 ntTSL 1 (best) BASIC26.23■■□□□ 1.79
Col11a1Q61245 Tsg101-201ENSMUST00000014546 1949 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
Col11a1Q61245 1700065D16Rik-202ENSMUST00000188975 506 ntTSL 3 BASIC26.23■■□□□ 1.79
Col11a1Q61245 Ywhaz-204ENSMUST00000110362 2122 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
Col11a1Q61245 Irx4-201ENSMUST00000022095 2589 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
Col11a1Q61245 AC153504.1-201ENSMUST00000218379 2290 ntBASIC26.21■■□□□ 1.79
Col11a1Q61245 Det1-201ENSMUST00000032839 2269 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
Col11a1Q61245 Pdf-201ENSMUST00000055316 1306 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
Col11a1Q61245 Mpnd-209ENSMUST00000162883 1400 ntTSL 5 BASIC26.2■■□□□ 1.79
Col11a1Q61245 Tfpt-204ENSMUST00000155592 1091 ntAPPRIS P3 TSL 1 (best) BASIC26.2■■□□□ 1.78
Col11a1Q61245 Nenf-201ENSMUST00000046770 742 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.78
Col11a1Q61245 Ech1-201ENSMUST00000066264 1267 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.78
Col11a1Q61245 C1qtnf5-204ENSMUST00000114821 1365 ntAPPRIS P1 TSL 2 BASIC26.2■■□□□ 1.78
Col11a1Q61245 Gm4419-202ENSMUST00000226239 1431 ntBASIC26.2■■□□□ 1.78
Col11a1Q61245 Tmem55b-209ENSMUST00000162957 1465 ntTSL 1 (best) BASIC26.2■■□□□ 1.78
Col11a1Q61245 Zbtb12-201ENSMUST00000052778 1858 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.78
Col11a1Q61245 Gm18755-201ENSMUST00000218030 1099 ntBASIC26.19■■□□□ 1.78
Col11a1Q61245 4833418N17Rik-201ENSMUST00000064826 615 ntBASIC26.19■■□□□ 1.78
Col11a1Q61245 Tlx2-201ENSMUST00000089641 1236 ntAPPRIS P1 TSL 1 (best) BASIC26.19■■□□□ 1.78
Col11a1Q61245 Jmy-202ENSMUST00000220513 1843 ntTSL 1 (best) BASIC26.19■■□□□ 1.78
Col11a1Q61245 Gm42501-201ENSMUST00000200220 1026 ntBASIC26.18■■□□□ 1.78
Col11a1Q61245 Runx2-211ENSMUST00000162629 1607 ntAPPRIS ALT2 TSL 5 BASIC26.18■■□□□ 1.78
Col11a1Q61245 Gipc1-201ENSMUST00000019577 1522 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
Col11a1Q61245 AC122379.1-201ENSMUST00000220658 355 ntTSL 3 BASIC26.18■■□□□ 1.78
Col11a1Q61245 4930524J08Rik-201ENSMUST00000046721 603 ntAPPRIS P1 BASIC26.18■■□□□ 1.78
Col11a1Q61245 Dynlt1f-201ENSMUST00000179554 807 ntAPPRIS P1 TSL 1 (best) BASIC26.17■■□□□ 1.78
Col11a1Q61245 Gm35161-201ENSMUST00000221765 941 ntTSL 5 BASIC26.17■■□□□ 1.78
Col11a1Q61245 Fam92a-202ENSMUST00000108285 1639 ntAPPRIS P3 TSL 5 BASIC26.17■■□□□ 1.78
Col11a1Q61245 Ndfip1-201ENSMUST00000025293 930 ntAPPRIS P1 TSL 1 (best) BASIC26.16■■□□□ 1.78
Col11a1Q61245 Pgp-201ENSMUST00000053024 1027 ntAPPRIS P1 TSL 1 (best) BASIC26.16■■□□□ 1.78
Col11a1Q61245 Hist2h3c1-201ENSMUST00000176059 1820 ntAPPRIS P1 BASIC26.16■■□□□ 1.78
Col11a1Q61245 Hist2h3c1-202ENSMUST00000177796 1825 ntBASIC26.16■■□□□ 1.78
Col11a1Q61245 Gm45095-201ENSMUST00000206736 254 ntTSL 5 BASIC26.16■■□□□ 1.78
Col11a1Q61245 Ablim1-208ENSMUST00000111544 2231 ntTSL 5 BASIC26.15■■□□□ 1.78
Col11a1Q61245 Pi16-201ENSMUST00000114699 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC26.15■■□□□ 1.78
Col11a1Q61245 Fam96b-203ENSMUST00000164884 918 ntAPPRIS P1 TSL 1 (best) BASIC26.15■■□□□ 1.78
Col11a1Q61245 H2afy-202ENSMUST00000045788 1933 ntTSL 1 (best) BASIC26.14■■□□□ 1.78
Col11a1Q61245 Bex1-201ENSMUST00000058125 866 ntAPPRIS P1 TSL 1 (best) BASIC26.14■■□□□ 1.78
Col11a1Q61245 Fgf16-201ENSMUST00000033581 1645 ntAPPRIS P1 TSL 1 (best) BASIC26.14■■□□□ 1.78
Col11a1Q61245 Acad9-205ENSMUST00000196648 552 ntTSL 3 BASIC26.14■■□□□ 1.77
Col11a1Q61245 Jmjd6-201ENSMUST00000047616 1668 ntAPPRIS P1 TSL 1 (best) BASIC26.13■■□□□ 1.77
Col11a1Q61245 Sds-204ENSMUST00000201684 1288 ntAPPRIS P1 TSL 5 BASIC26.13■■□□□ 1.77
Col11a1Q61245 Scn1b-201ENSMUST00000098548 1573 ntAPPRIS P1 TSL 1 (best) BASIC26.13■■□□□ 1.77
Col11a1Q61245 Sac3d1-201ENSMUST00000113533 1374 ntAPPRIS P1 TSL 1 (best) BASIC26.13■■□□□ 1.77
Col11a1Q61245 Susd3-203ENSMUST00000119721 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC26.12■■□□□ 1.77
Col11a1Q61245 Bcl7b-201ENSMUST00000031692 1758 ntAPPRIS P2 TSL 1 (best) BASIC26.12■■□□□ 1.77
Col11a1Q61245 Ccdc85c-201ENSMUST00000136175 1302 ntAPPRIS ALT2 TSL 5 BASIC26.12■■□□□ 1.77
Col11a1Q61245 Hnrnpa0-201ENSMUST00000007980 2678 ntAPPRIS P1 BASIC26.12■■□□□ 1.77
Col11a1Q61245 Hoxb3os-202ENSMUST00000147410 1945 ntTSL 5 BASIC26.12■■□□□ 1.77
Col11a1Q61245 Gm10837-201ENSMUST00000100294 1536 ntAPPRIS P1 BASIC26.12■■□□□ 1.77
Col11a1Q61245 Sox17-202ENSMUST00000116652 1512 ntAPPRIS P1 TSL 1 (best) BASIC26.12■■□□□ 1.77
Col11a1Q61245 Pfdn4-204ENSMUST00000109148 736 ntTSL 3 BASIC26.11■■□□□ 1.77
Col11a1Q61245 Smco4-203ENSMUST00000215907 994 ntAPPRIS P1 TSL 1 (best) BASIC26.11■■□□□ 1.77
Col11a1Q61245 Mir155hg-202ENSMUST00000185662 1362 ntTSL 5 BASIC26.11■■□□□ 1.77
Col11a1Q61245 Ubl7-208ENSMUST00000216841 1426 ntAPPRIS P1 TSL 5 BASIC26.11■■□□□ 1.77
Col11a1Q61245 Micu3-201ENSMUST00000068999 2219 ntAPPRIS P1 TSL 5 BASIC26.11■■□□□ 1.77
Col11a1Q61245 Metrnl-201ENSMUST00000036742 1401 ntAPPRIS P2 TSL 1 (best) BASIC26.1■■□□□ 1.77
Col11a1Q61245 Etfa-201ENSMUST00000034866 1392 ntAPPRIS P1 TSL 1 (best) BASIC26.1■■□□□ 1.77
Col11a1Q61245 B230377A18Rik-202ENSMUST00000192921 1364 ntBASIC26.09■■□□□ 1.77
Col11a1Q61245 Wdr34-201ENSMUST00000113711 1814 ntAPPRIS P1 TSL 1 (best) BASIC26.09■■□□□ 1.77
Col11a1Q61245 AC117245.1-201ENSMUST00000215481 566 ntTSL 3 BASIC26.09■■□□□ 1.77
Col11a1Q61245 Stk19-201ENSMUST00000077477 1120 ntAPPRIS P1 TSL 1 (best) BASIC26.09■■□□□ 1.77
Col11a1Q61245 Kcnip3-202ENSMUST00000088538 1296 ntAPPRIS P1 TSL 1 (best) BASIC26.09■■□□□ 1.77
Col11a1Q61245 Hmg20b-203ENSMUST00000105324 1540 ntAPPRIS P1 TSL 1 (best) BASIC26.07■■□□□ 1.76
Col11a1Q61245 Copz2-201ENSMUST00000018816 930 ntAPPRIS P1 TSL 1 (best) BASIC26.07■■□□□ 1.76
Col11a1Q61245 Ccdc84-212ENSMUST00000217351 888 ntTSL 3 BASIC26.07■■□□□ 1.76
Col11a1Q61245 Pdcd4-203ENSMUST00000165617 1806 ntAPPRIS P1 TSL 1 (best) BASIC26.07■■□□□ 1.76
Col11a1Q61245 Mpp6-203ENSMUST00000166318 2222 ntTSL 1 (best) BASIC26.07■■□□□ 1.76
Col11a1Q61245 Gadd45g-201ENSMUST00000021903 1071 ntAPPRIS P1 TSL 1 (best) BASIC26.07■■□□□ 1.76
Col11a1Q61245 Gm10232-201ENSMUST00000089221 720 ntBASIC26.06■■□□□ 1.76
Col11a1Q61245 Ssbp4-205ENSMUST00000210369 1828 ntTSL 2 BASIC26.06■■□□□ 1.76
Col11a1Q61245 Cldnd1-204ENSMUST00000162057 1540 ntAPPRIS P1 TSL 5 BASIC26.06■■□□□ 1.76
Col11a1Q61245 Ltb-203ENSMUST00000173600 905 ntAPPRIS ALT2 TSL 5 BASIC26.05■■□□□ 1.76
Col11a1Q61245 Vcpkmt-201ENSMUST00000058639 1027 ntAPPRIS P1 TSL 1 (best) BASIC26.05■■□□□ 1.76
Col11a1Q61245 Pdpk1-203ENSMUST00000115407 1730 ntTSL 5 BASIC26.05■■□□□ 1.76
Col11a1Q61245 Pdss1-207ENSMUST00000152170 1538 ntTSL 1 (best) BASIC26.05■■□□□ 1.76
Col11a1Q61245 Tmem106c-201ENSMUST00000064200 1635 ntAPPRIS P1 TSL 1 (best) BASIC26.04■■□□□ 1.76
Col11a1Q61245 Naxd-202ENSMUST00000177955 1307 ntAPPRIS P1 TSL 1 (best) BASIC26.04■■□□□ 1.76
Col11a1Q61245 AC117769.4-201ENSMUST00000225679 685 ntBASIC26.03■■□□□ 1.76
Col11a1Q61245 Rbm45-201ENSMUST00000046389 1898 ntAPPRIS P1 TSL 1 (best) BASIC26.03■■□□□ 1.76
Col11a1Q61245 Spata6-213ENSMUST00000153746 1444 ntTSL 1 (best) BASIC26.03■■□□□ 1.76
Col11a1Q61245 Rabac1-201ENSMUST00000076961 899 ntAPPRIS P1 TSL 1 (best) BASIC26.02■■□□□ 1.76
Col11a1Q61245 Gm2415-201ENSMUST00000128982 1474 ntTSL 1 (best) BASIC26.02■■□□□ 1.76
Col11a1Q61245 Wipi1-203ENSMUST00000106689 1220 ntTSL 1 (best) BASIC26.02■■□□□ 1.76
Col11a1Q61245 Clpp-201ENSMUST00000002735 1207 ntAPPRIS P1 TSL 1 (best) BASIC26.02■■□□□ 1.76
Col11a1Q61245 A430027H14Rik-201ENSMUST00000191809 1467 ntBASIC26.02■■□□□ 1.76
Retrieved 100 of 76,532 protein–RNA pairs in 39 ms