Protein–RNA interactions for Protein: Q3U1J4

Ddb1, DNA damage-binding protein 1, mousemouse

Known RBP Predictions only

Length 1,140 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddb1Q3U1J4 Ctxn1-201ENSMUST00000053252 1212 ntAPPRIS P1 TSL 1 (best) BASIC29.52■■■□□ 2.32
Ddb1Q3U1J4 Kcnip3-202ENSMUST00000088538 1296 ntAPPRIS P1 TSL 1 (best) BASIC29.52■■■□□ 2.32
Ddb1Q3U1J4 Gm43445-201ENSMUST00000198564 2091 ntBASIC29.51■■■□□ 2.31
Ddb1Q3U1J4 1700065D16Rik-202ENSMUST00000188975 506 ntTSL 3 BASIC29.51■■■□□ 2.31
Ddb1Q3U1J4 Gsc2-201ENSMUST00000012279 1172 ntAPPRIS P1 TSL 1 (best) BASIC29.5■■■□□ 2.31
Ddb1Q3U1J4 Pkig-202ENSMUST00000099105 640 ntAPPRIS P1 TSL 2 BASIC29.5■■■□□ 2.31
Ddb1Q3U1J4 Dusp2-201ENSMUST00000028846 1617 ntAPPRIS P1 TSL 1 (best) BASIC29.49■■■□□ 2.31
Ddb1Q3U1J4 Exosc8-201ENSMUST00000029316 1300 ntAPPRIS P1 TSL 1 (best) BASIC29.49■■■□□ 2.31
Ddb1Q3U1J4 Zbtb12-201ENSMUST00000052778 1858 ntAPPRIS P1 TSL 1 (best) BASIC29.49■■■□□ 2.31
Ddb1Q3U1J4 Rab40c-201ENSMUST00000026826 2466 ntAPPRIS P1 TSL 1 (best) BASIC29.49■■■□□ 2.31
Ddb1Q3U1J4 C1qtnf5-203ENSMUST00000114818 1337 ntAPPRIS P1 TSL 5 BASIC29.48■■■□□ 2.31
Ddb1Q3U1J4 Tmem120b-202ENSMUST00000111619 1256 ntTSL 1 (best) BASIC29.48■■■□□ 2.31
Ddb1Q3U1J4 Gm45095-201ENSMUST00000206736 254 ntTSL 5 BASIC29.48■■■□□ 2.31
Ddb1Q3U1J4 Gsk3a-201ENSMUST00000071739 2260 ntAPPRIS P2 TSL 2 BASIC29.48■■■□□ 2.31
Ddb1Q3U1J4 Fgf16-201ENSMUST00000033581 1645 ntAPPRIS P1 TSL 1 (best) BASIC29.48■■■□□ 2.31
Ddb1Q3U1J4 Metrnl-201ENSMUST00000036742 1401 ntAPPRIS P2 TSL 1 (best) BASIC29.47■■■□□ 2.31
Ddb1Q3U1J4 Runx2-211ENSMUST00000162629 1607 ntAPPRIS ALT2 TSL 5 BASIC29.47■■■□□ 2.31
Ddb1Q3U1J4 Pfdn4-204ENSMUST00000109148 736 ntTSL 3 BASIC29.47■■■□□ 2.31
Ddb1Q3U1J4 Nenf-201ENSMUST00000046770 742 ntAPPRIS P1 TSL 1 (best) BASIC29.46■■■□□ 2.31
Ddb1Q3U1J4 Polr1d-201ENSMUST00000050970 1196 ntAPPRIS P1 TSL 1 (best) BASIC29.46■■■□□ 2.31
Ddb1Q3U1J4 Kctd2-201ENSMUST00000103035 1764 ntAPPRIS P1 TSL 1 (best) BASIC29.46■■■□□ 2.31
Ddb1Q3U1J4 E2f5-201ENSMUST00000029069 1779 ntAPPRIS P2 TSL 1 (best) BASIC29.46■■■□□ 2.31
Ddb1Q3U1J4 Caap1-201ENSMUST00000030313 2107 ntAPPRIS P1 TSL 1 (best) BASIC29.45■■■□□ 2.31
Ddb1Q3U1J4 Nrg3-202ENSMUST00000168810 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC29.45■■■□□ 2.31
Ddb1Q3U1J4 Sox17-202ENSMUST00000116652 1512 ntAPPRIS P1 TSL 1 (best) BASIC29.45■■■□□ 2.3
Ddb1Q3U1J4 AC117245.1-201ENSMUST00000215481 566 ntTSL 3 BASIC29.44■■■□□ 2.3
Ddb1Q3U1J4 Fgf8-206ENSMUST00000111928 1056 ntTSL 1 (best) BASIC29.43■■■□□ 2.3
Ddb1Q3U1J4 Adgrb2-207ENSMUST00000120204 5170 ntAPPRIS ALT2 TSL 1 (best) BASIC29.42■■■□□ 2.3
Ddb1Q3U1J4 Ppia-202ENSMUST00000132846 1170 ntAPPRIS P1 TSL 1 (best) BASIC29.42■■■□□ 2.3
Ddb1Q3U1J4 Pgp-201ENSMUST00000053024 1027 ntAPPRIS P1 TSL 1 (best) BASIC29.42■■■□□ 2.3
Ddb1Q3U1J4 Ctbp1-201ENSMUST00000079746 2279 ntAPPRIS P3 TSL 1 (best) BASIC29.42■■■□□ 2.3
Ddb1Q3U1J4 Hist2h3c1-201ENSMUST00000176059 1820 ntAPPRIS P1 BASIC29.41■■■□□ 2.3
Ddb1Q3U1J4 Hist2h3c1-202ENSMUST00000177796 1825 ntBASIC29.41■■■□□ 2.3
Ddb1Q3U1J4 Det1-201ENSMUST00000032839 2269 ntAPPRIS P1 TSL 1 (best) BASIC29.41■■■□□ 2.3
Ddb1Q3U1J4 Tfpt-204ENSMUST00000155592 1091 ntAPPRIS P3 TSL 1 (best) BASIC29.41■■■□□ 2.3
Ddb1Q3U1J4 Acvr2b-201ENSMUST00000035093 1729 ntTSL 5 BASIC29.41■■■□□ 2.3
Ddb1Q3U1J4 Ech1-201ENSMUST00000066264 1267 ntAPPRIS P1 TSL 1 (best) BASIC29.41■■■□□ 2.3
Ddb1Q3U1J4 Gal3st1-202ENSMUST00000078757 1749 ntAPPRIS P1 TSL 1 (best) BASIC29.4■■■□□ 2.3
Ddb1Q3U1J4 Acad9-205ENSMUST00000196648 552 ntTSL 3 BASIC29.4■■■□□ 2.3
Ddb1Q3U1J4 AC122379.1-201ENSMUST00000220658 355 ntTSL 3 BASIC29.4■■■□□ 2.3
Ddb1Q3U1J4 Fam92a-202ENSMUST00000108285 1639 ntAPPRIS P3 TSL 5 BASIC29.4■■■□□ 2.3
Ddb1Q3U1J4 Sac3d1-201ENSMUST00000113533 1374 ntAPPRIS P1 TSL 1 (best) BASIC29.39■■■□□ 2.3
Ddb1Q3U1J4 Ablim1-208ENSMUST00000111544 2231 ntTSL 5 BASIC29.39■■■□□ 2.3
Ddb1Q3U1J4 Gm35161-201ENSMUST00000221765 941 ntTSL 5 BASIC29.39■■■□□ 2.3
Ddb1Q3U1J4 Vcpkmt-201ENSMUST00000058639 1027 ntAPPRIS P1 TSL 1 (best) BASIC29.39■■■□□ 2.3
Ddb1Q3U1J4 Irx4-201ENSMUST00000022095 2589 ntAPPRIS P1 TSL 1 (best) BASIC29.39■■■□□ 2.29
Ddb1Q3U1J4 Jmy-202ENSMUST00000220513 1843 ntTSL 1 (best) BASIC29.38■■■□□ 2.29
Ddb1Q3U1J4 Mpnd-209ENSMUST00000162883 1400 ntTSL 5 BASIC29.38■■■□□ 2.29
Ddb1Q3U1J4 H2afy-202ENSMUST00000045788 1933 ntTSL 1 (best) BASIC29.38■■■□□ 2.29
Ddb1Q3U1J4 Sds-204ENSMUST00000201684 1288 ntAPPRIS P1 TSL 5 BASIC29.38■■■□□ 2.29
Ddb1Q3U1J4 Gipc1-201ENSMUST00000019577 1522 ntAPPRIS P1 TSL 1 (best) BASIC29.38■■■□□ 2.29
Ddb1Q3U1J4 B230377A18Rik-202ENSMUST00000192921 1364 ntBASIC29.38■■■□□ 2.29
Ddb1Q3U1J4 Gm4419-202ENSMUST00000226239 1431 ntBASIC29.37■■■□□ 2.29
Ddb1Q3U1J4 Pi16-201ENSMUST00000114699 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC29.37■■■□□ 2.29
Ddb1Q3U1J4 St3gal5-201ENSMUST00000069994 2258 ntAPPRIS P3 TSL 1 (best) BASIC29.37■■■□□ 2.29
Ddb1Q3U1J4 Btg3-201ENSMUST00000023570 1414 ntAPPRIS P1 TSL 1 (best) BASIC29.37■■■□□ 2.29
Ddb1Q3U1J4 Tlx2-201ENSMUST00000089641 1236 ntAPPRIS P1 TSL 1 (best) BASIC29.36■■■□□ 2.29
Ddb1Q3U1J4 Ramp1-202ENSMUST00000165855 852 ntTSL 2 BASIC29.35■■■□□ 2.29
Ddb1Q3U1J4 Etf1-202ENSMUST00000180351 108 ntBASIC29.35■■■□□ 2.29
Ddb1Q3U1J4 Tmem11-201ENSMUST00000062677 1457 ntAPPRIS P1 TSL 1 (best) BASIC29.35■■■□□ 2.29
Ddb1Q3U1J4 Clpp-201ENSMUST00000002735 1207 ntAPPRIS P1 TSL 1 (best) BASIC29.34■■■□□ 2.29
Ddb1Q3U1J4 AC153504.1-201ENSMUST00000218379 2290 ntBASIC29.34■■■□□ 2.29
Ddb1Q3U1J4 4930524J08Rik-201ENSMUST00000046721 603 ntAPPRIS P1 BASIC29.33■■■□□ 2.29
Ddb1Q3U1J4 Ubl7-208ENSMUST00000216841 1426 ntAPPRIS P1 TSL 5 BASIC29.33■■■□□ 2.29
Ddb1Q3U1J4 St7-202ENSMUST00000052113 2046 ntAPPRIS P1 TSL 1 (best) BASIC29.32■■■□□ 2.28
Ddb1Q3U1J4 A430027H14Rik-201ENSMUST00000191809 1467 ntBASIC29.32■■■□□ 2.28
Ddb1Q3U1J4 H3f3a-207ENSMUST00000162814 724 ntAPPRIS P2 TSL 3 BASIC29.32■■■□□ 2.28
Ddb1Q3U1J4 Dynlt1f-201ENSMUST00000179554 807 ntAPPRIS P1 TSL 1 (best) BASIC29.32■■■□□ 2.28
Ddb1Q3U1J4 Socs1-201ENSMUST00000038099 1220 ntAPPRIS P1 TSL 1 (best) BASIC29.32■■■□□ 2.28
Ddb1Q3U1J4 Bcl7b-201ENSMUST00000031692 1758 ntAPPRIS P2 TSL 1 (best) BASIC29.31■■■□□ 2.28
Ddb1Q3U1J4 Marcksl1-201ENSMUST00000062356 1605 ntAPPRIS P1 TSL 1 (best) BASIC29.31■■■□□ 2.28
Ddb1Q3U1J4 Pdss1-207ENSMUST00000152170 1538 ntTSL 1 (best) BASIC29.31■■■□□ 2.28
Ddb1Q3U1J4 Mir155hg-202ENSMUST00000185662 1362 ntTSL 5 BASIC29.31■■■□□ 2.28
Ddb1Q3U1J4 Ccdc85c-201ENSMUST00000136175 1302 ntAPPRIS ALT2 TSL 5 BASIC29.31■■■□□ 2.28
Ddb1Q3U1J4 Sec61a2-201ENSMUST00000026926 756 ntTSL 5 BASIC29.31■■■□□ 2.28
Ddb1Q3U1J4 Pmpca-202ENSMUST00000114093 1638 ntTSL 1 (best) BASIC29.31■■■□□ 2.28
Ddb1Q3U1J4 Snrpb-201ENSMUST00000103199 1161 ntAPPRIS P1 TSL 1 (best) BASIC29.3■■■□□ 2.28
Ddb1Q3U1J4 Bex1-201ENSMUST00000058125 866 ntAPPRIS P1 TSL 1 (best) BASIC29.3■■■□□ 2.28
Ddb1Q3U1J4 Gm10232-201ENSMUST00000089221 720 ntBASIC29.3■■■□□ 2.28
Ddb1Q3U1J4 Acbd6-203ENSMUST00000097529 1255 ntTSL 1 (best) BASIC29.3■■■□□ 2.28
Ddb1Q3U1J4 Scn1b-201ENSMUST00000098548 1573 ntAPPRIS P1 TSL 1 (best) BASIC29.3■■■□□ 2.28
Ddb1Q3U1J4 Hoxb3os-202ENSMUST00000147410 1945 ntTSL 5 BASIC29.3■■■□□ 2.28
Ddb1Q3U1J4 Etfa-201ENSMUST00000034866 1392 ntAPPRIS P1 TSL 1 (best) BASIC29.29■■■□□ 2.28
Ddb1Q3U1J4 Pdpk1-203ENSMUST00000115407 1730 ntTSL 5 BASIC29.29■■■□□ 2.28
Ddb1Q3U1J4 Smco4-203ENSMUST00000215907 994 ntAPPRIS P1 TSL 1 (best) BASIC29.29■■■□□ 2.28
Ddb1Q3U1J4 Pth2-201ENSMUST00000042754 503 ntAPPRIS P1 TSL 1 (best) BASIC29.29■■■□□ 2.28
Ddb1Q3U1J4 Micu3-201ENSMUST00000068999 2219 ntAPPRIS P1 TSL 5 BASIC29.28■■■□□ 2.28
Ddb1Q3U1J4 Txnrd2-201ENSMUST00000115604 1235 ntTSL 1 (best) BASIC29.27■■■□□ 2.28
Ddb1Q3U1J4 Ccdc84-212ENSMUST00000217351 888 ntTSL 3 BASIC29.27■■■□□ 2.28
Ddb1Q3U1J4 Copz2-201ENSMUST00000018816 930 ntAPPRIS P1 TSL 1 (best) BASIC29.26■■■□□ 2.27
Ddb1Q3U1J4 Bloc1s4-201ENSMUST00000071949 1273 ntAPPRIS P1 BASIC29.26■■■□□ 2.27
Ddb1Q3U1J4 Ssbp4-205ENSMUST00000210369 1828 ntTSL 2 BASIC29.25■■■□□ 2.27
Ddb1Q3U1J4 Pgk1-201ENSMUST00000081593 1825 ntAPPRIS P1 TSL 1 (best) BASIC29.25■■■□□ 2.27
Ddb1Q3U1J4 Ildr2-205ENSMUST00000193860 2320 ntTSL 1 (best) BASIC29.25■■■□□ 2.27
Ddb1Q3U1J4 Susd3-203ENSMUST00000119721 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC29.25■■■□□ 2.27
Ddb1Q3U1J4 Ncoa7-206ENSMUST00000215725 1445 ntTSL 1 (best) BASIC29.25■■■□□ 2.27
Ddb1Q3U1J4 Ccna1-202ENSMUST00000197238 1719 ntAPPRIS P1 TSL 5 BASIC29.25■■■□□ 2.27
Ddb1Q3U1J4 C1qtnf5-204ENSMUST00000114821 1365 ntAPPRIS P1 TSL 2 BASIC29.25■■■□□ 2.27
Ddb1Q3U1J4 Wipi1-203ENSMUST00000106689 1220 ntTSL 1 (best) BASIC29.24■■■□□ 2.27
Ddb1Q3U1J4 Pdcd4-203ENSMUST00000165617 1806 ntAPPRIS P1 TSL 1 (best) BASIC29.24■■■□□ 2.27
Retrieved 100 of 76,532 protein–RNA pairs in 32.9 ms