Protein–RNA interactions for Protein: P98160

HSPG2, Basement membrane-specific heparan sulfate proteoglycan core protein, humanhuman

Predictions only

Length 4,391 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2P98160 PPP4C-214ENST00000627746 1301 ntTSL 5 BASIC15.84■□□□□ 0.13
HSPG2P98160 INPP4A-203ENST00000409463 1565 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
HSPG2P98160 SUMF1-205ENST00000458465 1102 ntTSL 2 BASIC15.82■□□□□ 0.12
HSPG2P98160 RASL10A-202ENST00000401450 1720 ntTSL 2 BASIC15.82■□□□□ 0.12
HSPG2P98160 SLC16A8-201ENST00000320521 1878 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
HSPG2P98160 TNFSF12-201ENST00000293825 1553 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
HSPG2P98160 FOXB2-201ENST00000376708 1299 ntAPPRIS P1 BASIC15.82■□□□□ 0.12
HSPG2P98160 CDKN2A-208ENST00000498124 880 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
HSPG2P98160 TMEM134-202ENST00000393877 823 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
HSPG2P98160 TMPO-AS1-201ENST00000546421 738 ntTSL 5 BASIC15.81■□□□□ 0.12
HSPG2P98160 NKX2-1-204ENST00000522719 1417 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
HSPG2P98160 TMEM120A-214ENST00000493111 1456 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
HSPG2P98160 KCNG2-201ENST00000316249 1401 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
HSPG2P98160 TSPAN10-204ENST00000611590 1068 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
HSPG2P98160 GRK6-206ENST00000507633 1660 ntTSL 5 BASIC15.8■□□□□ 0.12
HSPG2P98160 GATA6-202ENST00000581694 2057 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
HSPG2P98160 CISD3-204ENST00000613478 2074 ntAPPRIS P1 TSL 2 BASIC15.8■□□□□ 0.12
HSPG2P98160 SLC25A23-203ENST00000334510 1424 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
HSPG2P98160 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
HSPG2P98160 AL359258.2-201ENST00000564063 1566 ntBASIC15.79■□□□□ 0.12
HSPG2P98160 CCDC160-202ENST00000517294 1790 ntAPPRIS P1 TSL 5 BASIC15.79■□□□□ 0.12
HSPG2P98160 MDK-206ENST00000407067 1026 ntAPPRIS P2 TSL 1 (best) BASIC15.79■□□□□ 0.12
HSPG2P98160 AL121906.1-201ENST00000606866 440 ntTSL 3 BASIC15.79■□□□□ 0.12
HSPG2P98160 AC018755.3-202ENST00000596210 929 ntBASIC15.79■□□□□ 0.12
HSPG2P98160 MTCP1-202ENST00000369476 2274 ntAPPRIS P1 TSL 3 BASIC15.79■□□□□ 0.12
HSPG2P98160 IDNK-203ENST00000405990 629 ntTSL 2 BASIC15.78■□□□□ 0.12
HSPG2P98160 ANKRD9-205ENST00000560748 1413 ntAPPRIS P1 TSL 2 BASIC15.78■□□□□ 0.12
HSPG2P98160 RIPPLY2-202ENST00000369689 664 ntAPPRIS P2 TSL 1 (best) BASIC15.78■□□□□ 0.12
HSPG2P98160 TK2-216ENST00000564917 1156 ntTSL 3 BASIC15.78■□□□□ 0.12
HSPG2P98160 FSD1L-208ENST00000495708 1906 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
HSPG2P98160 AL121987.2-201ENST00000418602 1578 ntTSL 2 BASIC15.78■□□□□ 0.12
HSPG2P98160 MAGI2-AS3-201ENST00000414797 1072 ntTSL 2 BASIC15.77■□□□□ 0.12
HSPG2P98160 TMUB1-201ENST00000297533 1353 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
HSPG2P98160 AC093536.1-201ENST00000569153 554 ntBASIC15.77■□□□□ 0.11
HSPG2P98160 POTEF-201ENST00000361163 1586 ntTSL 5 BASIC15.77■□□□□ 0.11
HSPG2P98160 BCL7B-201ENST00000223368 1975 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
HSPG2P98160 SOWAHD-201ENST00000343905 1552 ntAPPRIS P1 BASIC15.77■□□□□ 0.11
HSPG2P98160 MKRN1-202ENST00000443720 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC15.76■□□□□ 0.11
HSPG2P98160 C14orf80-211ENST00000450383 1107 ntAPPRIS ALT2 TSL 5 BASIC15.76■□□□□ 0.11
HSPG2P98160 HOXC-AS1-201ENST00000505700 548 ntTSL 2 BASIC15.76■□□□□ 0.11
HSPG2P98160 AC131281.2-201ENST00000520478 145 ntBASIC15.76■□□□□ 0.11
HSPG2P98160 ELK4-201ENST00000289703 2118 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
HSPG2P98160 FAM159A-204ENST00000517870 748 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
HSPG2P98160 HOXB3-210ENST00000489475 1845 ntTSL 2 BASIC15.76■□□□□ 0.11
HSPG2P98160 PYCARD-202ENST00000350605 696 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
HSPG2P98160 RASGEF1B-211ENST00000514050 537 ntTSL 2 BASIC15.75■□□□□ 0.11
HSPG2P98160 TUBBP5-204ENST00000635438 565 ntTSL 4 BASIC15.75■□□□□ 0.11
HSPG2P98160 OLFM2-201ENST00000264833 2019 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
HSPG2P98160 GALR2-201ENST00000329003 1364 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
HSPG2P98160 P2RX2-205ENST00000352418 1200 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
HSPG2P98160 NKX2-5-204ENST00000521848 1027 ntTSL 2 BASIC15.75■□□□□ 0.11
HSPG2P98160 LINC01925-201ENST00000579492 500 ntTSL 5 BASIC15.75■□□□□ 0.11
HSPG2P98160 DTWD2-204ENST00000515439 1275 ntTSL 5 BASIC15.75■□□□□ 0.11
HSPG2P98160 CHST12-204ENST00000618655 2131 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
HSPG2P98160 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC15.75■□□□□ 0.11
HSPG2P98160 FADS3-201ENST00000278829 1779 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
HSPG2P98160 CACNG6-203ENST00000352529 1635 ntTSL 5 BASIC15.74■□□□□ 0.11
HSPG2P98160 AC005837.3-201ENST00000612163 286 ntBASIC15.74■□□□□ 0.11
HSPG2P98160 AC010913.1-201ENST00000608612 420 ntTSL 2 BASIC15.74■□□□□ 0.11
HSPG2P98160 SMUG1-203ENST00000401977 1082 ntAPPRIS P1 TSL 5 BASIC15.74■□□□□ 0.11
HSPG2P98160 HYI-210ENST00000486909 905 ntTSL 5 BASIC15.74■□□□□ 0.11
HSPG2P98160 CUL4A-209ENST00000488558 1111 ntTSL 3 BASIC15.74■□□□□ 0.11
HSPG2P98160 MEST-211ENST00000437945 1455 ntTSL 5 BASIC15.74■□□□□ 0.11
HSPG2P98160 MSRB2-201ENST00000376510 1803 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
HSPG2P98160 AC027237.3-202ENST00000558617 1778 ntTSL 2 BASIC15.74■□□□□ 0.11
HSPG2P98160 C7orf50-202ENST00000397098 2131 ntAPPRIS P2 TSL 1 (best) BASIC15.74■□□□□ 0.11
HSPG2P98160 TMEM229A-201ENST00000455783 2108 ntAPPRIS P1 BASIC15.74■□□□□ 0.11
HSPG2P98160 ARPC2-202ENST00000315717 1505 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
HSPG2P98160 CHTF8-205ENST00000519520 856 ntTSL 2 BASIC15.73■□□□□ 0.11
HSPG2P98160 TIMM29-201ENST00000270502 1425 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
HSPG2P98160 HNRNPAB-205ENST00000506259 1674 ntAPPRIS ALT2 TSL 1 (best) BASIC15.73■□□□□ 0.11
HSPG2P98160 UNC93B8-201ENST00000511903 705 ntBASIC15.73■□□□□ 0.11
HSPG2P98160 TMEM150A-202ENST00000334462 1518 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
HSPG2P98160 NALT1-201ENST00000429224 738 ntTSL 5 BASIC15.72■□□□□ 0.11
HSPG2P98160 AC010907.1-201ENST00000441632 807 ntTSL 3 BASIC15.72■□□□□ 0.11
HSPG2P98160 MIR4787-201ENST00000607364 84 ntBASIC15.72■□□□□ 0.11
HSPG2P98160 AC110285.6-201ENST00000617652 491 ntBASIC15.72■□□□□ 0.11
HSPG2P98160 P2RX2-202ENST00000348800 1222 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
HSPG2P98160 P2RX2-204ENST00000351222 1140 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
HSPG2P98160 P2RX2-207ENST00000449132 1113 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
HSPG2P98160 PFN2-211ENST00000489155 636 ntTSL 4 BASIC15.72■□□□□ 0.11
HSPG2P98160 AP001267.3-203ENST00000554407 579 ntTSL 2 BASIC15.72■□□□□ 0.11
HSPG2P98160 ZNRF2P3-201ENST00000424200 374 ntBASIC15.72■□□□□ 0.11
HSPG2P98160 ITPKA-201ENST00000260386 1824 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
HSPG2P98160 DRAP1-201ENST00000312515 989 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
HSPG2P98160 HMX1-201ENST00000400677 1895 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
HSPG2P98160 CLTB-201ENST00000310418 1215 ntAPPRIS P4 TSL 1 (best) BASIC15.71■□□□□ 0.11
HSPG2P98160 CLTB-202ENST00000345807 1161 ntAPPRIS ALT1 TSL 1 (best) BASIC15.71■□□□□ 0.11
HSPG2P98160 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC15.71■□□□□ 0.11
HSPG2P98160 SYCE1-204ENST00000432597 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.11
HSPG2P98160 FTCD-203ENST00000397746 1878 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
HSPG2P98160 AL354928.1-201ENST00000438380 617 ntTSL 2 BASIC15.71■□□□□ 0.1
HSPG2P98160 ARHGEF7-AS2-201ENST00000425094 1239 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
HSPG2P98160 AL357078.1-201ENST00000448344 310 ntTSL 4 BASIC15.7■□□□□ 0.1
HSPG2P98160 LSM7-204ENST00000587502 575 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
HSPG2P98160 MAZ-205ENST00000562337 1574 ntTSL 3 BASIC15.7■□□□□ 0.1
HSPG2P98160 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
HSPG2P98160 MRPS34-202ENST00000397375 1024 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
HSPG2P98160 MAST4-206ENST00000406374 1066 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
HSPG2P98160 C5orf38-202ENST00000397835 681 ntAPPRIS ALT2 TSL 5 BASIC15.69■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 19 ms