Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 P2RX2-204ENST00000351222 1140 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
PRKDCP78527 P2RX2-207ENST00000449132 1113 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
PRKDCP78527 C14orf80-211ENST00000450383 1107 ntAPPRIS ALT2 TSL 5 BASIC18.5■□□□□ 0.55
PRKDCP78527 AC110285.6-201ENST00000617652 491 ntBASIC18.5■□□□□ 0.55
PRKDCP78527 TNFSF12-201ENST00000293825 1553 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
PRKDCP78527 DHRS13-203ENST00000426464 1569 ntTSL 2 BASIC18.49■□□□□ 0.55
PRKDCP78527 AC026271.2-201ENST00000428091 497 ntBASIC18.49■□□□□ 0.55
PRKDCP78527 AC005837.3-201ENST00000612163 286 ntBASIC18.49■□□□□ 0.55
PRKDCP78527 FMR1-219ENST00000621453 1864 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
PRKDCP78527 HOXC-AS1-201ENST00000505700 548 ntTSL 2 BASIC18.49■□□□□ 0.55
PRKDCP78527 MDK-206ENST00000407067 1026 ntAPPRIS P2 TSL 1 (best) BASIC18.48■□□□□ 0.55
PRKDCP78527 ZNRF2P3-201ENST00000424200 374 ntBASIC18.48■□□□□ 0.55
PRKDCP78527 HYI-210ENST00000486909 905 ntTSL 5 BASIC18.48■□□□□ 0.55
PRKDCP78527 TSPAN10-204ENST00000611590 1068 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
PRKDCP78527 TMPO-AS1-201ENST00000546421 738 ntTSL 5 BASIC18.48■□□□□ 0.55
PRKDCP78527 AC093536.1-201ENST00000569153 554 ntBASIC18.47■□□□□ 0.55
PRKDCP78527 TMEM120A-214ENST00000493111 1456 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
PRKDCP78527 MRPL4-201ENST00000253099 1455 ntAPPRIS P2 TSL 1 (best) BASIC18.47■□□□□ 0.55
PRKDCP78527 GATA2-AS1-202ENST00000468377 1578 ntTSL 2 BASIC18.47■□□□□ 0.55
PRKDCP78527 NALT1-201ENST00000429224 738 ntTSL 5 BASIC18.47■□□□□ 0.55
PRKDCP78527 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC18.46■□□□□ 0.55
PRKDCP78527 SMUG1-203ENST00000401977 1082 ntAPPRIS P1 TSL 5 BASIC18.45■□□□□ 0.54
PRKDCP78527 EFNA1-202ENST00000368407 1926 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
PRKDCP78527 UNC93B8-201ENST00000511903 705 ntBASIC18.45■□□□□ 0.54
PRKDCP78527 TUBBP5-204ENST00000635438 565 ntTSL 4 BASIC18.45■□□□□ 0.54
PRKDCP78527 SNTG2-201ENST00000308624 1888 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
PRKDCP78527 CUL4A-209ENST00000488558 1111 ntTSL 3 BASIC18.45■□□□□ 0.54
PRKDCP78527 AP001267.3-203ENST00000554407 579 ntTSL 2 BASIC18.45■□□□□ 0.54
PRKDCP78527 AL121906.1-201ENST00000606866 440 ntTSL 3 BASIC18.45■□□□□ 0.54
PRKDCP78527 CNIH2-203ENST00000528852 1524 ntAPPRIS ALT1 TSL 1 (best) BASIC18.45■□□□□ 0.54
PRKDCP78527 AP2S1-201ENST00000263270 935 ntAPPRIS P3 TSL 1 (best) BASIC18.44■□□□□ 0.54
PRKDCP78527 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC18.44■□□□□ 0.54
PRKDCP78527 MAGI2-AS3-201ENST00000414797 1072 ntTSL 2 BASIC18.44■□□□□ 0.54
PRKDCP78527 FAM159A-204ENST00000517870 748 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
PRKDCP78527 TK2-216ENST00000564917 1156 ntTSL 3 BASIC18.44■□□□□ 0.54
PRKDCP78527 KCNG2-201ENST00000316249 1401 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
PRKDCP78527 ANKRD9-205ENST00000560748 1413 ntAPPRIS P1 TSL 2 BASIC18.44■□□□□ 0.54
PRKDCP78527 CHTF8-205ENST00000519520 856 ntTSL 2 BASIC18.44■□□□□ 0.54
PRKDCP78527 IDNK-203ENST00000405990 629 ntTSL 2 BASIC18.43■□□□□ 0.54
PRKDCP78527 CACNG6-203ENST00000352529 1635 ntTSL 5 BASIC18.43■□□□□ 0.54
PRKDCP78527 CARS2-201ENST00000257347 1879 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
PRKDCP78527 CLTB-201ENST00000310418 1215 ntAPPRIS P4 TSL 1 (best) BASIC18.42■□□□□ 0.54
PRKDCP78527 CLTB-202ENST00000345807 1161 ntAPPRIS ALT1 TSL 1 (best) BASIC18.42■□□□□ 0.54
PRKDCP78527 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC18.42■□□□□ 0.54
PRKDCP78527 KLRG2-202ENST00000393039 1148 ntTSL 5 BASIC18.42■□□□□ 0.54
PRKDCP78527 PABPN1-207ENST00000556821 1220 ntTSL 2 BASIC18.42■□□□□ 0.54
PRKDCP78527 RDX-206ENST00000528900 1814 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
PRKDCP78527 FADS3-201ENST00000278829 1779 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
PRKDCP78527 AL357078.1-201ENST00000448344 310 ntTSL 4 BASIC18.42■□□□□ 0.54
PRKDCP78527 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
PRKDCP78527 AC010913.1-201ENST00000608612 420 ntTSL 2 BASIC18.41■□□□□ 0.54
PRKDCP78527 MIR4787-201ENST00000607364 84 ntBASIC18.41■□□□□ 0.54
PRKDCP78527 INPP4A-203ENST00000409463 1565 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
PRKDCP78527 SLC25A23-203ENST00000334510 1424 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
PRKDCP78527 MAST4-206ENST00000406374 1066 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
PRKDCP78527 LINC01925-201ENST00000579492 500 ntTSL 5 BASIC18.4■□□□□ 0.54
PRKDCP78527 AC104564.3-201ENST00000582367 638 ntBASIC18.4■□□□□ 0.54
PRKDCP78527 LSM7-204ENST00000587502 575 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
PRKDCP78527 AL359258.2-201ENST00000564063 1566 ntBASIC18.4■□□□□ 0.54
PRKDCP78527 RASL10A-202ENST00000401450 1720 ntTSL 2 BASIC18.4■□□□□ 0.54
PRKDCP78527 GUK1-205ENST00000366722 850 ntTSL 3 BASIC18.4■□□□□ 0.54
PRKDCP78527 SAMD1-202ENST00000533683 2164 ntAPPRIS P5 TSL 1 (best) BASIC18.4■□□□□ 0.54
PRKDCP78527 RIPPLY2-202ENST00000369689 664 ntAPPRIS P2 TSL 1 (best) BASIC18.39■□□□□ 0.54
PRKDCP78527 AL354928.1-201ENST00000438380 617 ntTSL 2 BASIC18.39■□□□□ 0.54
PRKDCP78527 AC105935.1-201ENST00000424174 422 ntTSL 3 BASIC18.39■□□□□ 0.53
PRKDCP78527 LINC00472-204ENST00000436803 667 ntTSL 5 BASIC18.39■□□□□ 0.53
PRKDCP78527 NKX2-1-204ENST00000522719 1417 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
PRKDCP78527 NPC2-207ENST00000555619 1035 ntAPPRIS P2 TSL 1 (best) BASIC18.39■□□□□ 0.53
PRKDCP78527 GALR2-201ENST00000329003 1364 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
PRKDCP78527 PRELID2-204ENST00000505416 738 ntAPPRIS P2 TSL 3 BASIC18.38■□□□□ 0.53
PRKDCP78527 CHTF8-208ENST00000522091 863 ntTSL 2 BASIC18.38■□□□□ 0.53
PRKDCP78527 SLC16A8-201ENST00000320521 1878 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
PRKDCP78527 TMEM171-202ENST00000454765 1535 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
PRKDCP78527 GRK6-206ENST00000507633 1660 ntTSL 5 BASIC18.38■□□□□ 0.53
PRKDCP78527 SYCE1-204ENST00000432597 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
PRKDCP78527 NKX2-5-204ENST00000521848 1027 ntTSL 2 BASIC18.38■□□□□ 0.53
PRKDCP78527 POTEF-201ENST00000361163 1586 ntTSL 5 BASIC18.38■□□□□ 0.53
PRKDCP78527 DRAP1-201ENST00000312515 989 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
PRKDCP78527 PCGF3-202ENST00000400151 1175 ntTSL 2 BASIC18.38■□□□□ 0.53
PRKDCP78527 RASGEF1B-211ENST00000514050 537 ntTSL 2 BASIC18.38■□□□□ 0.53
PRKDCP78527 SSX2IP-209ENST00000603677 1149 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
PRKDCP78527 FAM107A-203ENST00000447756 1432 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
PRKDCP78527 MAPK12-201ENST00000215659 1918 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
PRKDCP78527 KRTAP5-1-201ENST00000382171 942 ntAPPRIS P1 BASIC18.37■□□□□ 0.53
PRKDCP78527 AC018755.3-202ENST00000596210 929 ntBASIC18.37■□□□□ 0.53
PRKDCP78527 TUBB6-201ENST00000317702 2064 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
PRKDCP78527 EGFL8-220ENST00000395512 1312 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
PRKDCP78527 CBR3-201ENST00000290354 1169 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
PRKDCP78527 AL121987.2-201ENST00000418602 1578 ntTSL 2 BASIC18.36■□□□□ 0.53
PRKDCP78527 ACBD4-216ENST00000619916 1276 ntTSL 5 BASIC18.36■□□□□ 0.53
PRKDCP78527 HES4-201ENST00000304952 899 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
PRKDCP78527 AC103702.2-201ENST00000433510 1270 ntTSL 2 BASIC18.35■□□□□ 0.53
PRKDCP78527 CISD3-204ENST00000613478 2074 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
PRKDCP78527 MLST8-203ENST00000397124 1691 ntAPPRIS P3 TSL 5 BASIC18.35■□□□□ 0.53
PRKDCP78527 CCDC160-202ENST00000517294 1790 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
PRKDCP78527 RNASET2-210ENST00000508775 1375 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
PRKDCP78527 EBPL-205ENST00000378284 967 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
PRKDCP78527 MRPS34-202ENST00000397375 1024 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
PRKDCP78527 AL445237.1-202ENST00000604581 425 ntTSL 5 BASIC18.35■□□□□ 0.53
PRKDCP78527 GSX2-205ENST00000611459 1262 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 25.8 ms