Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 FGF18-201ENST00000274625 1986 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
ABCA4P78363 H2AFY-204ENST00000423969 924 ntTSL 2 BASIC21.44■■□□□ 1.02
ABCA4P78363 C9orf147-202ENST00000457681 561 ntTSL 2 BASIC21.44■■□□□ 1.02
ABCA4P78363 PFN2-211ENST00000489155 636 ntTSL 4 BASIC21.44■■□□□ 1.02
ABCA4P78363 AC116025.2-201ENST00000576632 443 ntTSL 3 BASIC21.44■■□□□ 1.02
ABCA4P78363 FOXE3-201ENST00000335071 1981 ntAPPRIS P1 BASIC21.44■■□□□ 1.02
ABCA4P78363 HES6-204ENST00000409182 863 ntTSL 2 BASIC21.44■■□□□ 1.02
ABCA4P78363 SPCS2P3-201ENST00000500401 656 ntBASIC21.44■■□□□ 1.02
ABCA4P78363 RCC1L-202ENST00000614461 2419 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
ABCA4P78363 TMEM54-201ENST00000329151 871 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
ABCA4P78363 S100A6-201ENST00000368719 665 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
ABCA4P78363 NSMCE4A-201ENST00000369017 1224 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
ABCA4P78363 FAM159A-204ENST00000517870 748 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
ABCA4P78363 CUL4A-202ENST00000375440 2364 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
ABCA4P78363 TMEM120A-214ENST00000493111 1456 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
ABCA4P78363 SHISA8-202ENST00000621082 1405 ntAPPRIS P2 TSL 5 BASIC21.43■■□□□ 1.02
ABCA4P78363 MDFIC-206ENST00000448022 484 ntTSL 2 BASIC21.43■■□□□ 1.02
ABCA4P78363 SDF2L1-201ENST00000248958 865 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
ABCA4P78363 PGM5P2-201ENST00000613141 1980 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
ABCA4P78363 HOXB3-202ENST00000460160 1525 ntTSL 5 BASIC21.42■■□□□ 1.02
ABCA4P78363 TAZ-215ENST00000612460 1793 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
ABCA4P78363 PDPK1-203ENST00000389224 2416 ntTSL 2 BASIC21.4■■□□□ 1.02
ABCA4P78363 IGFBP3-202ENST00000381083 1050 ntAPPRIS ALT1 TSL 5 BASIC21.4■■□□□ 1.02
ABCA4P78363 AC138647.1-201ENST00000427937 648 ntAPPRIS P1 TSL 5 BASIC21.4■■□□□ 1.02
ABCA4P78363 PSMG4-206ENST00000438998 838 ntAPPRIS P1 TSL 2 BASIC21.4■■□□□ 1.02
ABCA4P78363 FGF20-201ENST00000180166 1688 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
ABCA4P78363 TNFRSF25-205ENST00000377782 1632 ntAPPRIS P4 TSL 1 (best) BASIC21.4■■□□□ 1.02
ABCA4P78363 SMKR1-201ENST00000462322 1035 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
ABCA4P78363 C17orf74-202ENST00000574034 1287 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
ABCA4P78363 AC093390.2-201ENST00000638628 1007 ntTSL 5 BASIC21.4■■□□□ 1.02
ABCA4P78363 HMCES-202ENST00000389735 1763 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
ABCA4P78363 RBM42-205ENST00000589871 1487 ntTSL 5 BASIC21.39■■□□□ 1.02
ABCA4P78363 FAM120C-203ENST00000477084 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC21.39■■□□□ 1.02
ABCA4P78363 AC053527.1-201ENST00000502790 685 ntTSL 3 BASIC21.39■■□□□ 1.02
ABCA4P78363 ATXN3-252ENST00000620536 1044 ntTSL 5 BASIC21.39■■□□□ 1.02
ABCA4P78363 ATXN3-253ENST00000621269 936 ntTSL 5 BASIC21.39■■□□□ 1.02
ABCA4P78363 DERA-201ENST00000428559 1705 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
ABCA4P78363 FGFRL1-205ENST00000510644 2304 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
ABCA4P78363 PPP1CC-208ENST00000551676 1581 ntTSL 2 BASIC21.39■■□□□ 1.01
ABCA4P78363 BEX3-202ENST00000372634 753 ntTSL 2 BASIC21.39■■□□□ 1.01
ABCA4P78363 AC010980.1-201ENST00000587192 1142 ntBASIC21.39■■□□□ 1.01
ABCA4P78363 SDCCAG3-201ENST00000298537 2314 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
ABCA4P78363 HTR6-201ENST00000289753 1984 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
ABCA4P78363 TNFSF12-201ENST00000293825 1553 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
ABCA4P78363 TPRG1L-202ENST00000378344 2414 ntAPPRIS P1 TSL 2 BASIC21.38■■□□□ 1.01
ABCA4P78363 POTEF-201ENST00000361163 1586 ntTSL 5 BASIC21.38■■□□□ 1.01
ABCA4P78363 AMN-201ENST00000299155 1907 ntAPPRIS P2 TSL 1 (best) BASIC21.38■■□□□ 1.01
ABCA4P78363 CERS2-205ENST00000368954 2505 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
ABCA4P78363 FOXQ1-201ENST00000296839 2309 ntAPPRIS P1 BASIC21.38■■□□□ 1.01
ABCA4P78363 TSPY4-202ENST00000426950 1179 ntAPPRIS P5 TSL 5 BASIC21.38■■□□□ 1.01
ABCA4P78363 SIRT3-201ENST00000382743 2543 ntAPPRIS P2 TSL 1 (best) BASIC21.37■■□□□ 1.01
ABCA4P78363 ABHD17B-202ENST00000377041 1312 ntAPPRIS P4 TSL 1 (best) BASIC21.37■■□□□ 1.01
ABCA4P78363 TIMM29-201ENST00000270502 1425 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
ABCA4P78363 IGFBP6-201ENST00000301464 1169 ntAPPRIS P2 TSL 1 (best) BASIC21.37■■□□□ 1.01
ABCA4P78363 SH3BP2-221ENST00000511747 2351 ntAPPRIS P3 TSL 1 (best) BASIC21.37■■□□□ 1.01
ABCA4P78363 AC139426.1-201ENST00000568218 2529 ntBASIC21.37■■□□□ 1.01
ABCA4P78363 AC064853.4-201ENST00000641394 363 ntAPPRIS P1 BASIC21.36■■□□□ 1.01
ABCA4P78363 AP002414.2-202ENST00000590929 1450 ntBASIC21.36■■□□□ 1.01
ABCA4P78363 FAM120AOS-202ENST00000423591 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC21.36■■□□□ 1.01
ABCA4P78363 GUSBP5-201ENST00000418136 578 ntBASIC21.36■■□□□ 1.01
ABCA4P78363 AC074183.2-201ENST00000623112 922 ntBASIC21.36■■□□□ 1.01
ABCA4P78363 TMEM187-201ENST00000369982 1880 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
ABCA4P78363 DCBLD1-201ENST00000296955 1979 ntAPPRIS P2 TSL 1 (best) BASIC21.35■■□□□ 1.01
ABCA4P78363 CHST14-202ENST00000559991 1968 ntTSL 5 BASIC21.35■■□□□ 1.01
ABCA4P78363 GUCD1-207ENST00000447813 895 ntTSL 3 BASIC21.35■■□□□ 1.01
ABCA4P78363 AC139795.1-202ENST00000500444 432 ntBASIC21.35■■□□□ 1.01
ABCA4P78363 PQLC3-204ENST00000441908 1784 ntTSL 2 BASIC21.34■■□□□ 1.01
ABCA4P78363 CCDC88C-205ENST00000553403 1651 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
ABCA4P78363 RP9P-202ENST00000450133 1212 ntBASIC21.34■■□□□ 1.01
ABCA4P78363 PITX3-202ENST00000539804 1187 ntAPPRIS P1 TSL 5 BASIC21.34■■□□□ 1.01
ABCA4P78363 PTRH1-208ENST00000543175 814 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
ABCA4P78363 AC008105.2-203ENST00000591361 550 ntTSL 4 BASIC21.34■■□□□ 1.01
ABCA4P78363 KRT8P33-201ENST00000508125 1423 ntBASIC21.34■■□□□ 1.01
ABCA4P78363 HYI-210ENST00000486909 905 ntTSL 5 BASIC21.34■■□□□ 1.01
ABCA4P78363 PVT1_1.1-201ENST00000615125 194 ntBASIC21.34■■□□□ 1.01
ABCA4P78363 MIR935-201ENST00000401179 91 ntBASIC21.33■■□□□ 1.01
ABCA4P78363 PBX1-202ENST00000367897 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC21.33■■□□□ 1.01
ABCA4P78363 RHOBTB3-206ENST00000506817 1432 ntTSL 2 BASIC21.33■■□□□ 1
ABCA4P78363 RASL10A-201ENST00000216101 1490 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
ABCA4P78363 NAXE-203ENST00000368235 1125 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
ABCA4P78363 TPRA1-209ENST00000489960 1903 ntAPPRIS P1 TSL 5 BASIC21.32■■□□□ 1
ABCA4P78363 PARL-202ENST00000317096 1414 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
ABCA4P78363 IFNGR2-201ENST00000290219 2221 ntAPPRIS P3 TSL 1 (best) BASIC21.32■■□□□ 1
ABCA4P78363 MPC1-201ENST00000341756 976 ntTSL 1 (best) BASIC21.31■■□□□ 1
ABCA4P78363 FKBP1B-202ENST00000380991 1010 ntTSL 1 (best) BASIC21.31■■□□□ 1
ABCA4P78363 RAET1E-AS1-203ENST00000606915 1210 ntTSL 1 (best) BASIC21.31■■□□□ 1
ABCA4P78363 MPC1-206ENST00000621630 977 ntAPPRIS ALT1 TSL 5 BASIC21.31■■□□□ 1
ABCA4P78363 MPC1-207ENST00000621685 1192 ntTSL 5 BASIC21.31■■□□□ 1
ABCA4P78363 ARMC10-211ENST00000541300 2266 ntTSL 1 (best) BASIC21.31■■□□□ 1
ABCA4P78363 HOXC9-201ENST00000303450 1516 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
ABCA4P78363 QDPR-202ENST00000428702 1278 ntTSL 2 BASIC21.3■■□□□ 1
ABCA4P78363 SOCS2-202ENST00000536696 1065 ntAPPRIS P1 TSL 2 BASIC21.3■■□□□ 1
ABCA4P78363 MIR4508-201ENST00000584178 70 ntBASIC21.3■■□□□ 1
ABCA4P78363 THA1P-201ENST00000590384 1145 ntBASIC21.3■■□□□ 1
ABCA4P78363 ANKRD9-205ENST00000560748 1413 ntAPPRIS P1 TSL 2 BASIC21.3■■□□□ 1
ABCA4P78363 FKBP1A-204ENST00000400137 1622 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
ABCA4P78363 HDGF-210ENST00000537739 2073 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
ABCA4P78363 TXNRD2-204ENST00000400521 2115 ntAPPRIS P2 TSL 1 (best) BASIC21.29■■□□□ 1
ABCA4P78363 MIR6765-201ENST00000614092 87 ntBASIC21.29■■□□□ 1
ABCA4P78363 CGREF1-203ENST00000402394 1906 ntAPPRIS P2 TSL 2 BASIC21.29■■□□□ 1
Retrieved 100 of 98,524 protein–RNA pairs in 33.4 ms