Protein–RNA interactions for Protein: P43241

Cdx2, Homeobox protein CDX-2, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx2P43241 Rps24-207ENSMUST00000224568 714 ntBASIC21.78■■□□□ 1.08
Cdx2P43241 A930002H24Rik-201ENSMUST00000050753 492 ntAPPRIS P1 BASIC21.78■■□□□ 1.08
Cdx2P43241 Gm45444-201ENSMUST00000211394 898 ntBASIC21.77■■□□□ 1.08
Cdx2P43241 Hdgf-201ENSMUST00000005017 2245 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
Cdx2P43241 Mpnd-208ENSMUST00000159996 1444 ntAPPRIS ALT2 TSL 5 BASIC21.77■■□□□ 1.08
Cdx2P43241 Mypop-203ENSMUST00000131087 1951 ntAPPRIS P1 TSL 5 BASIC21.77■■□□□ 1.08
Cdx2P43241 Pdpk1-203ENSMUST00000115407 1730 ntTSL 5 BASIC21.77■■□□□ 1.08
Cdx2P43241 Cckbr-202ENSMUST00000181339 1326 ntTSL 1 (best) BASIC21.77■■□□□ 1.07
Cdx2P43241 Runx2-211ENSMUST00000162629 1607 ntAPPRIS ALT2 TSL 5 BASIC21.77■■□□□ 1.07
Cdx2P43241 0610009L18Rik-201ENSMUST00000143813 619 ntTSL 2 BASIC21.76■■□□□ 1.07
Cdx2P43241 Vdac1-202ENSMUST00000102758 2022 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Cdx2P43241 Hrasls-204ENSMUST00000162747 854 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Cdx2P43241 Srcap-202ENSMUST00000098025 1257 ntTSL 5 BASIC21.75■■□□□ 1.07
Cdx2P43241 B230377A18Rik-202ENSMUST00000192921 1364 ntBASIC21.74■■□□□ 1.07
Cdx2P43241 Adap1-201ENSMUST00000110865 2557 ntAPPRIS P1 TSL 5 BASIC21.74■■□□□ 1.07
Cdx2P43241 Dusp2-201ENSMUST00000028846 1617 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Cdx2P43241 Fgf16-201ENSMUST00000033581 1645 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Cdx2P43241 Ints11-202ENSMUST00000120794 1884 ntTSL 5 BASIC21.74■■□□□ 1.07
Cdx2P43241 Kcnk2-205ENSMUST00000192723 1642 ntAPPRIS ALT1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Cdx2P43241 Tmem11-201ENSMUST00000062677 1457 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Cdx2P43241 Gm28040-202ENSMUST00000184603 890 ntAPPRIS P1 TSL 2 BASIC21.73■■□□□ 1.07
Cdx2P43241 Scn1b-201ENSMUST00000098548 1573 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Cdx2P43241 Fam168b-204ENSMUST00000170092 941 ntTSL 5 BASIC21.72■■□□□ 1.07
Cdx2P43241 Arhgap39-204ENSMUST00000176219 542 ntTSL 5 BASIC21.72■■□□□ 1.07
Cdx2P43241 Rbm45-201ENSMUST00000046389 1898 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Cdx2P43241 1700097N02Rik-201ENSMUST00000188852 845 ntTSL 3 BASIC21.71■■□□□ 1.07
Cdx2P43241 Dtnb-203ENSMUST00000164578 2355 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
Cdx2P43241 Fn1-208ENSMUST00000186940 1350 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
Cdx2P43241 Ccna1-202ENSMUST00000197238 1719 ntAPPRIS P1 TSL 5 BASIC21.7■■□□□ 1.06
Cdx2P43241 Gm16599-201ENSMUST00000148082 1182 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
Cdx2P43241 Gm20532-201ENSMUST00000174066 780 ntAPPRIS P1 TSL 5 BASIC21.7■■□□□ 1.06
Cdx2P43241 Gm20684-201ENSMUST00000176744 380 ntTSL 3 BASIC21.7■■□□□ 1.06
Cdx2P43241 Hoxd9-201ENSMUST00000059272 2136 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Cdx2P43241 Sox17-202ENSMUST00000116652 1512 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Cdx2P43241 Pde8b-204ENSMUST00000159608 2370 ntTSL 5 BASIC21.69■■□□□ 1.06
Cdx2P43241 Gsc2-201ENSMUST00000012279 1172 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Cdx2P43241 Papola-211ENSMUST00000166735 1033 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
Cdx2P43241 Ndfip1-201ENSMUST00000025293 930 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Cdx2P43241 Rpl34-201ENSMUST00000062601 624 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Cdx2P43241 Upp2-202ENSMUST00000071543 2150 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
Cdx2P43241 Gm45095-201ENSMUST00000206736 254 ntTSL 5 BASIC21.68■■□□□ 1.06
Cdx2P43241 Gm45102-201ENSMUST00000207427 857 ntBASIC21.68■■□□□ 1.06
Cdx2P43241 Exosc8-201ENSMUST00000029316 1300 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
Cdx2P43241 Gm20208-202ENSMUST00000219905 1528 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
Cdx2P43241 Tmem238-201ENSMUST00000168578 1375 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Cdx2P43241 March2-203ENSMUST00000172767 1381 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Cdx2P43241 Rps19-202ENSMUST00000108429 633 ntAPPRIS P1 TSL 2 BASIC21.67■■□□□ 1.06
Cdx2P43241 Usf2-203ENSMUST00000162228 960 ntTSL 5 BASIC21.67■■□□□ 1.06
Cdx2P43241 Eif5a-213ENSMUST00000164359 1281 ntAPPRIS P1 TSL 5 BASIC21.67■■□□□ 1.06
Cdx2P43241 Pth1r-202ENSMUST00000166716 2219 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Cdx2P43241 Kcnj6-201ENSMUST00000095873 1773 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
Cdx2P43241 Gm14117-201ENSMUST00000122417 843 ntBASIC21.66■■□□□ 1.06
Cdx2P43241 Ppia-202ENSMUST00000132846 1170 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Cdx2P43241 Pcf11-204ENSMUST00000208058 461 ntTSL 5 BASIC21.66■■□□□ 1.06
Cdx2P43241 Thra-202ENSMUST00000103139 2246 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Cdx2P43241 Zfp346-203ENSMUST00000159278 1253 ntAPPRIS ALT2 TSL 5 BASIC21.65■■□□□ 1.06
Cdx2P43241 1700065D16Rik-202ENSMUST00000188975 506 ntTSL 3 BASIC21.65■■□□□ 1.06
Cdx2P43241 Vegfb-201ENSMUST00000025914 1281 ntAPPRIS P3 TSL 1 (best) BASIC21.65■■□□□ 1.06
Cdx2P43241 Tmem70-203ENSMUST00000177501 1636 ntAPPRIS P3 TSL 1 (best) BASIC21.65■■□□□ 1.06
Cdx2P43241 Fam196a-201ENSMUST00000171394 2490 ntAPPRIS P1 TSL 5 BASIC21.64■■□□□ 1.05
Cdx2P43241 Reps1-206ENSMUST00000154718 2402 ntTSL 5 BASIC21.64■■□□□ 1.05
Cdx2P43241 Gm42501-201ENSMUST00000200220 1026 ntBASIC21.64■■□□□ 1.05
Cdx2P43241 Camk2n2-201ENSMUST00000052939 1291 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
Cdx2P43241 Gm10645-201ENSMUST00000098605 1090 ntAPPRIS P1 BASIC21.64■■□□□ 1.05
Cdx2P43241 Tmem106c-201ENSMUST00000064200 1635 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
Cdx2P43241 Tmem55b-209ENSMUST00000162957 1465 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
Cdx2P43241 A430027H14Rik-201ENSMUST00000191809 1467 ntBASIC21.64■■□□□ 1.05
Cdx2P43241 Glrx3-201ENSMUST00000064404 1685 ntAPPRIS P2 TSL 1 (best) BASIC21.63■■□□□ 1.05
Cdx2P43241 Syce3-201ENSMUST00000109314 448 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
Cdx2P43241 Gt(ROSA)26Sor-201ENSMUST00000124246 1181 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
Cdx2P43241 Fkbp1b-201ENSMUST00000020964 976 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
Cdx2P43241 Cdkn2d-203ENSMUST00000215619 1423 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
Cdx2P43241 Hrh3-205ENSMUST00000165762 1368 ntAPPRIS ALT2 TSL 5 BASIC21.62■■□□□ 1.05
Cdx2P43241 Gemin7-203ENSMUST00000119912 653 ntAPPRIS P1 TSL 3 BASIC21.62■■□□□ 1.05
Cdx2P43241 Clpp-201ENSMUST00000002735 1207 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
Cdx2P43241 Tmpo-203ENSMUST00000092219 1854 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
Cdx2P43241 Btg3-201ENSMUST00000023570 1414 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
Cdx2P43241 Pmpca-202ENSMUST00000114093 1638 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
Cdx2P43241 C1qtnf5-203ENSMUST00000114818 1337 ntAPPRIS P1 TSL 5 BASIC21.61■■□□□ 1.05
Cdx2P43241 Tmem150b-201ENSMUST00000086363 1341 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
Cdx2P43241 Gm9767-201ENSMUST00000041011 1193 ntAPPRIS P1 BASIC21.6■■□□□ 1.05
Cdx2P43241 Vcpkmt-201ENSMUST00000058639 1027 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
Cdx2P43241 Metrnl-201ENSMUST00000036742 1401 ntAPPRIS P2 TSL 1 (best) BASIC21.6■■□□□ 1.05
Cdx2P43241 St7-208ENSMUST00000115419 2194 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
Cdx2P43241 Tmem189-201ENSMUST00000006587 2329 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
Cdx2P43241 Upf3a-201ENSMUST00000043767 2057 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
Cdx2P43241 Asf1a-201ENSMUST00000020004 2201 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
Cdx2P43241 Susd3-203ENSMUST00000119721 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC21.59■■□□□ 1.05
Cdx2P43241 St7-205ENSMUST00000081635 2115 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
Cdx2P43241 Tmem235-201ENSMUST00000093905 1820 ntAPPRIS P1 TSL 5 BASIC21.59■■□□□ 1.05
Cdx2P43241 Emid1-201ENSMUST00000062821 1947 ntAPPRIS P2 TSL 1 (best) BASIC21.59■■□□□ 1.05
Cdx2P43241 Gng12-204ENSMUST00000114225 1876 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
Cdx2P43241 Smox-206ENSMUST00000110183 1159 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
Cdx2P43241 Sds-204ENSMUST00000201684 1288 ntAPPRIS P1 TSL 5 BASIC21.58■■□□□ 1.05
Cdx2P43241 Gm9959-201ENSMUST00000068277 390 ntBASIC21.58■■□□□ 1.05
Cdx2P43241 Vmac-201ENSMUST00000067931 2174 ntAPPRIS P3 TSL 1 (best) BASIC21.58■■□□□ 1.04
Cdx2P43241 Ffar4-201ENSMUST00000067098 1393 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
Cdx2P43241 Iffo2-203ENSMUST00000174078 5716 ntAPPRIS ALT2 TSL 1 (best) BASIC21.58■■□□□ 1.04
Cdx2P43241 Pdf-201ENSMUST00000055316 1306 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
Cdx2P43241 Mpnd-209ENSMUST00000162883 1400 ntTSL 5 BASIC21.57■■□□□ 1.04
Retrieved 100 of 76,532 protein–RNA pairs in 75.7 ms