Protein–RNA interactions for Protein: P35498

SCN1A, Sodium channel protein type 1 subunit alpha, humanhuman

Predictions only

Length 2,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1AP35498 GNG10-201ENST00000374293 1491 ntAPPRIS P1 TSL 1 (best) BASIC26.67■■□□□ 1.86
SCN1AP35498 PROCA1-201ENST00000301039 1566 ntTSL 1 (best) BASIC26.67■■□□□ 1.86
SCN1AP35498 AC142086.6-201ENST00000621154 1765 ntBASIC26.67■■□□□ 1.86
SCN1AP35498 AC126177.7-201ENST00000547904 679 ntBASIC26.66■■□□□ 1.86
SCN1AP35498 FCGRT-217ENST00000599988 660 ntTSL 5 BASIC26.66■■□□□ 1.86
SCN1AP35498 EFEMP2-201ENST00000307998 2034 ntAPPRIS P1 TSL 1 (best) BASIC26.66■■□□□ 1.86
SCN1AP35498 RAD51-210ENST00000557850 1397 ntTSL 2 BASIC26.66■■□□□ 1.86
SCN1AP35498 HDHD5-202ENST00000336737 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC26.66■■□□□ 1.86
SCN1AP35498 FKBP1A-204ENST00000400137 1622 ntAPPRIS P1 TSL 1 (best) BASIC26.65■■□□□ 1.86
SCN1AP35498 C8orf58-202ENST00000409586 2021 ntAPPRIS ALT2 TSL 2 BASIC26.65■■□□□ 1.86
SCN1AP35498 TIMM29-201ENST00000270502 1425 ntAPPRIS P1 TSL 1 (best) BASIC26.65■■□□□ 1.86
SCN1AP35498 C12orf75-201ENST00000443585 1366 ntAPPRIS P1 TSL 2 BASIC26.65■■□□□ 1.86
SCN1AP35498 CD6-206ENST00000452451 1782 ntAPPRIS ALT2 TSL 1 (best) BASIC26.64■■□□□ 1.86
SCN1AP35498 APLP1-201ENST00000221891 2495 ntAPPRIS P1 TSL 1 (best) BASIC26.64■■□□□ 1.86
SCN1AP35498 PTCH1-210ENST00000468211 1254 ntTSL 1 (best) BASIC26.64■■□□□ 1.86
SCN1AP35498 LTC4S-205ENST00000486713 496 ntTSL 2 BASIC26.64■■□□□ 1.86
SCN1AP35498 ZNF639-209ENST00000496856 2033 ntAPPRIS P1 TSL 1 (best) BASIC26.63■■□□□ 1.85
SCN1AP35498 AC009690.3-201ENST00000569547 1902 ntAPPRIS P1 TSL 2 BASIC26.63■■□□□ 1.85
SCN1AP35498 CAPNS1-215ENST00000628018 1509 ntAPPRIS ALT2 TSL 5 BASIC26.62■■□□□ 1.85
SCN1AP35498 MDFIC-206ENST00000448022 484 ntTSL 2 BASIC26.61■■□□□ 1.85
SCN1AP35498 BTBD19-201ENST00000409335 1214 ntTSL 5 BASIC26.61■■□□□ 1.85
SCN1AP35498 AL449106.1-201ENST00000608517 1980 ntBASIC26.61■■□□□ 1.85
SCN1AP35498 PDK1-202ENST00000392571 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC26.6■■□□□ 1.85
SCN1AP35498 MFSD12-201ENST00000355415 2124 ntAPPRIS P3 TSL 1 (best) BASIC26.6■■□□□ 1.85
SCN1AP35498 ZNF775-201ENST00000329630 2257 ntAPPRIS P1 TSL 1 (best) BASIC26.6■■□□□ 1.85
SCN1AP35498 MEN1-204ENST00000377313 1871 ntAPPRIS P3 TSL 2 BASIC26.6■■□□□ 1.85
SCN1AP35498 PBX1-202ENST00000367897 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC26.59■■□□□ 1.85
SCN1AP35498 HYI-213ENST00000583037 1322 ntTSL 5 BASIC26.59■■□□□ 1.85
SCN1AP35498 RAB40C-201ENST00000248139 2699 ntAPPRIS P1 TSL 1 (best) BASIC26.58■■□□□ 1.85
SCN1AP35498 TRIM52-AS1-202ENST00000507434 672 ntTSL 1 (best) BASIC26.58■■□□□ 1.85
SCN1AP35498 ACAA1-220ENST00000627515 1862 ntTSL 5 BASIC26.58■■□□□ 1.85
SCN1AP35498 TTC36-201ENST00000302783 874 ntAPPRIS P1 TSL 1 (best) BASIC26.58■■□□□ 1.85
SCN1AP35498 CCND3-205ENST00000415497 1843 ntTSL 2 BASIC26.57■■□□□ 1.84
SCN1AP35498 SCCPDH-201ENST00000366510 2503 ntAPPRIS P1 TSL 1 (best) BASIC26.57■■□□□ 1.84
SCN1AP35498 PLPPR3-204ENST00000520876 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC26.57■■□□□ 1.84
SCN1AP35498 ECEL1P2-201ENST00000461596 1295 ntBASIC26.56■■□□□ 1.84
SCN1AP35498 PHYH-201ENST00000263038 1577 ntAPPRIS P1 TSL 1 (best) BASIC26.56■■□□□ 1.84
SCN1AP35498 MAPK3-205ENST00000395202 1008 ntTSL 1 (best) BASIC26.56■■□□□ 1.84
SCN1AP35498 ELOC-207ENST00000522337 816 ntAPPRIS P1 TSL 2 BASIC26.56■■□□□ 1.84
SCN1AP35498 LIME1-206ENST00000487026 805 ntAPPRIS ALT2 TSL 5 BASIC26.55■■□□□ 1.84
SCN1AP35498 GGA1-204ENST00000381756 2107 ntTSL 1 (best) BASIC26.55■■□□□ 1.84
SCN1AP35498 REST-210ENST00000638187 1334 ntTSL 5 BASIC26.55■■□□□ 1.84
SCN1AP35498 CDPF1-201ENST00000314567 1875 ntAPPRIS P2 TSL 1 (best) BASIC26.55■■□□□ 1.84
SCN1AP35498 LDLRAD3-203ENST00000528989 1879 ntTSL 1 (best) BASIC26.55■■□□□ 1.84
SCN1AP35498 ZDHHC3-203ENST00000342790 1336 ntTSL 5 BASIC26.54■■□□□ 1.84
SCN1AP35498 PPAN-202ENST00000393793 1575 ntTSL 5 BASIC26.54■■□□□ 1.84
SCN1AP35498 UCK1-204ENST00000372215 2167 ntAPPRIS P1 TSL 1 (best) BASIC26.53■■□□□ 1.84
SCN1AP35498 KCTD5-202ENST00000564195 774 ntTSL 5 BASIC26.53■■□□□ 1.84
SCN1AP35498 CCDC136-202ENST00000378685 1689 ntAPPRIS ALT2 TSL 2 BASIC26.53■■□□□ 1.84
SCN1AP35498 C14orf80-205ENST00000392523 1845 ntAPPRIS ALT2 TSL 1 (best) BASIC26.53■■□□□ 1.84
SCN1AP35498 AC107214.1-201ENST00000457303 559 ntTSL 1 (best) BASIC26.53■■□□□ 1.84
SCN1AP35498 NTF6A-201ENST00000591175 560 ntBASIC26.52■■□□□ 1.84
SCN1AP35498 AL359504.2-201ENST00000605506 1601 ntBASIC26.52■■□□□ 1.84
SCN1AP35498 CLEC11A-201ENST00000250340 1419 ntAPPRIS P1 TSL 1 (best) BASIC26.52■■□□□ 1.84
SCN1AP35498 GADD45A-205ENST00000617962 1142 ntTSL 1 (best) BASIC26.51■■□□□ 1.83
SCN1AP35498 FGF20-201ENST00000180166 1688 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.83
SCN1AP35498 FAAH-201ENST00000243167 2094 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.83
SCN1AP35498 VIPR2-204ENST00000421760 717 ntTSL 3 BASIC26.51■■□□□ 1.83
SCN1AP35498 FLVCR1-AS1-203ENST00000426161 892 ntTSL 1 (best) BASIC26.51■■□□□ 1.83
SCN1AP35498 C11orf96-203ENST00000617612 1294 ntAPPRIS P1 BASIC26.51■■□□□ 1.83
SCN1AP35498 CABP1-202ENST00000316803 1658 ntTSL 1 (best) BASIC26.5■■□□□ 1.83
SCN1AP35498 PLEKHF1-201ENST00000436066 2084 ntAPPRIS P1 TSL 1 (best) BASIC26.5■■□□□ 1.83
SCN1AP35498 RBPMS-209ENST00000520161 842 ntTSL 2 BASIC26.5■■□□□ 1.83
SCN1AP35498 C16orf52-207ENST00000569656 1257 ntTSL 5 BASIC26.5■■□□□ 1.83
SCN1AP35498 AC007029.1-201ENST00000604183 313 ntBASIC26.5■■□□□ 1.83
SCN1AP35498 KAZN-207ENST00000503743 1475 ntTSL 1 (best) BASIC26.5■■□□□ 1.83
SCN1AP35498 RHEB-201ENST00000262187 2075 ntAPPRIS P1 TSL 1 (best) BASIC26.5■■□□□ 1.83
SCN1AP35498 KRT18P60-201ENST00000312876 1297 ntBASIC26.49■■□□□ 1.83
SCN1AP35498 WBP1-202ENST00000393972 1325 ntTSL 2 BASIC26.49■■□□□ 1.83
SCN1AP35498 VSIG8-201ENST00000368100 1818 ntAPPRIS P1 TSL 1 (best) BASIC26.49■■□□□ 1.83
SCN1AP35498 AC093536.1-201ENST00000569153 554 ntBASIC26.49■■□□□ 1.83
SCN1AP35498 CPTP-201ENST00000343938 2190 ntAPPRIS P1 TSL 2 BASIC26.49■■□□□ 1.83
SCN1AP35498 PQLC3-204ENST00000441908 1784 ntTSL 2 BASIC26.48■■□□□ 1.83
SCN1AP35498 TM6SF1-204ENST00000379390 1638 ntTSL 1 (best) BASIC26.48■■□□□ 1.83
SCN1AP35498 ARL6IP4-208ENST00000439686 796 ntAPPRIS ALT2 TSL 3 BASIC26.48■■□□□ 1.83
SCN1AP35498 PXMP2-205ENST00000543589 632 ntTSL 3 BASIC26.48■■□□□ 1.83
SCN1AP35498 C16orf95-206ENST00000618367 974 ntAPPRIS ALT2 TSL 2 BASIC26.48■■□□□ 1.83
SCN1AP35498 TSGA13-204ENST00000456951 2046 ntAPPRIS P2 TSL 2 BASIC26.48■■□□□ 1.83
SCN1AP35498 C20orf24-201ENST00000342422 896 ntTSL 2 BASIC26.48■■□□□ 1.83
SCN1AP35498 C20orf24-202ENST00000344795 1114 ntAPPRIS P1 TSL 1 (best) BASIC26.48■■□□□ 1.83
SCN1AP35498 CDKN3-202ENST00000335183 893 ntAPPRIS P2 TSL 1 (best) BASIC26.47■■□□□ 1.83
SCN1AP35498 CDKN3-211ENST00000611205 874 ntAPPRIS ALT2 TSL 5 BASIC26.47■■□□□ 1.83
SCN1AP35498 SMPD5-203ENST00000639008 1464 ntBASIC26.46■■□□□ 1.83
SCN1AP35498 ZMYND19-201ENST00000298585 1375 ntAPPRIS P1 TSL 1 (best) BASIC26.46■■□□□ 1.83
SCN1AP35498 CRTAP-202ENST00000449224 1811 ntAPPRIS ALT2 TSL 2 BASIC26.46■■□□□ 1.83
SCN1AP35498 PWWP2B-201ENST00000305233 2651 ntAPPRIS P1 TSL 1 (best) BASIC26.46■■□□□ 1.83
SCN1AP35498 CAMK1D-203ENST00000615792 1725 ntTSL 5 BASIC26.46■■□□□ 1.83
SCN1AP35498 PKIG-205ENST00000372891 1443 ntAPPRIS P1 TSL 2 BASIC26.46■■□□□ 1.83
SCN1AP35498 MANF-204ENST00000528157 1153 ntAPPRIS P1 TSL 1 (best) BASIC26.45■■□□□ 1.82
SCN1AP35498 ADAMTSL5-202ENST00000395467 1533 ntTSL 5 BASIC26.45■■□□□ 1.82
SCN1AP35498 BBC3-204ENST00000449228 1827 ntTSL 1 (best) BASIC26.45■■□□□ 1.82
SCN1AP35498 PFN2-211ENST00000489155 636 ntTSL 4 BASIC26.44■■□□□ 1.82
SCN1AP35498 HAND2-201ENST00000359562 2780 ntAPPRIS P1 TSL 1 (best) BASIC26.44■■□□□ 1.82
SCN1AP35498 ST7L-206ENST00000369666 1815 ntTSL 1 (best) BASIC26.44■■□□□ 1.82
SCN1AP35498 ZNF653-201ENST00000293771 2240 ntAPPRIS P1 TSL 1 (best) BASIC26.44■■□□□ 1.82
SCN1AP35498 TMEM55B-201ENST00000250489 1961 ntAPPRIS P3 TSL 1 (best) BASIC26.44■■□□□ 1.82
SCN1AP35498 AP003068.2-202ENST00000526623 1662 ntTSL 2 BASIC26.44■■□□□ 1.82
SCN1AP35498 U85056.1-201ENST00000616429 682 ntBASIC26.43■■□□□ 1.82
SCN1AP35498 CTSA-203ENST00000372459 1972 ntTSL 1 (best) BASIC26.42■■□□□ 1.82
SCN1AP35498 UNCX-201ENST00000316333 2048 ntAPPRIS P1 TSL 1 (best) BASIC26.42■■□□□ 1.82
Retrieved 100 of 98,524 protein–RNA pairs in 25.2 ms