Protein–RNA interactions for Protein: P31648

Slc6a1, Sodium- and chloride-dependent GABA transporter 1, mousemouse

Predictions only

Length 599 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Slc6a1P31648 4932443I19Rik-201ENSMUST00000166277 799 ntAPPRIS P2 TSL 1 (best) BASIC19.35■□□□□ 0.69
Slc6a1P31648 Picalm-205ENSMUST00000207225 3489 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
Slc6a1P31648 Abhd17c-201ENSMUST00000117085 2238 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Slc6a1P31648 Ctdspl-201ENSMUST00000073109 4589 ntAPPRIS P2 TSL 1 (best) BASIC19.34■□□□□ 0.69
Slc6a1P31648 Dusp26-205ENSMUST00000170204 1627 ntAPPRIS P1 TSL 5 BASIC19.34■□□□□ 0.69
Slc6a1P31648 Tsen34-203ENSMUST00000108629 1238 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
Slc6a1P31648 Acot5-201ENSMUST00000046422 1518 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Slc6a1P31648 Acss2-203ENSMUST00000103142 2145 ntTSL 5 BASIC19.34■□□□□ 0.69
Slc6a1P31648 Irf2bp1-201ENSMUST00000053713 2734 ntAPPRIS P1 BASIC19.34■□□□□ 0.69
Slc6a1P31648 Krt10-201ENSMUST00000103131 2094 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Slc6a1P31648 Pan3-201ENSMUST00000031651 5048 ntAPPRIS P2 TSL 5 BASIC19.34■□□□□ 0.69
Slc6a1P31648 E330009J07Rik-201ENSMUST00000039008 1949 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
Slc6a1P31648 Henmt1-201ENSMUST00000059946 1998 ntAPPRIS P2 TSL 1 (best) BASIC19.32■□□□□ 0.68
Slc6a1P31648 A330023F24Rik-201ENSMUST00000181226 955 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
Slc6a1P31648 Gm43863-201ENSMUST00000203822 1192 ntBASIC19.32■□□□□ 0.68
Slc6a1P31648 Ppp1r14b-201ENSMUST00000070850 919 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Slc6a1P31648 St7-209ENSMUST00000115420 2094 ntTSL 5 BASIC19.32■□□□□ 0.68
Slc6a1P31648 Peli3-201ENSMUST00000025834 1971 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Slc6a1P31648 AC164550.2-201ENSMUST00000219127 2086 ntTSL 5 BASIC19.31■□□□□ 0.68
Slc6a1P31648 Atpaf1-203ENSMUST00000176047 2330 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Slc6a1P31648 Ppp1r12c-201ENSMUST00000013886 2983 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Slc6a1P31648 Hlx-201ENSMUST00000048572 2278 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Slc6a1P31648 2810459M11Rik-201ENSMUST00000027429 1225 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
Slc6a1P31648 2310014F06Rik-201ENSMUST00000146145 1567 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
Slc6a1P31648 Tmpo-203ENSMUST00000092219 1854 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
Slc6a1P31648 A430072P03Rik-201ENSMUST00000161480 1510 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
Slc6a1P31648 Lor-201ENSMUST00000058150 1779 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Slc6a1P31648 Flot2-201ENSMUST00000072289 2621 ntAPPRIS P2 TSL 1 (best) BASIC19.29■□□□□ 0.68
Slc6a1P31648 Lbx1-201ENSMUST00000099401 2484 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Slc6a1P31648 Zfp639-202ENSMUST00000191783 1988 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Slc6a1P31648 Kcnk1-201ENSMUST00000046765 2235 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Slc6a1P31648 Gm26711-201ENSMUST00000180866 1833 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
Slc6a1P31648 Porcn-201ENSMUST00000077595 1872 ntAPPRIS P4 TSL 1 (best) BASIC19.27■□□□□ 0.68
Slc6a1P31648 Porcn-204ENSMUST00000089403 1854 ntAPPRIS ALT1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Slc6a1P31648 Mageb3-201ENSMUST00000104936 2341 ntAPPRIS P1 BASIC19.27■□□□□ 0.68
Slc6a1P31648 Spg7-201ENSMUST00000108868 845 ntTSL 2 BASIC19.27■□□□□ 0.68
Slc6a1P31648 A530058N18Rik-204ENSMUST00000141209 709 ntTSL 5 BASIC19.27■□□□□ 0.68
Slc6a1P31648 Srsf10-203ENSMUST00000102544 2225 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
Slc6a1P31648 Hnrnpab-201ENSMUST00000074669 2370 ntAPPRIS P3 TSL 1 (best) BASIC19.26■□□□□ 0.67
Slc6a1P31648 Gm12523-201ENSMUST00000148844 599 ntTSL 5 BASIC19.26■□□□□ 0.67
Slc6a1P31648 Usp39-201ENSMUST00000070345 2244 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Slc6a1P31648 Gm15672-201ENSMUST00000151512 1354 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Slc6a1P31648 Dlx6os2-201ENSMUST00000178206 1354 ntBASIC19.26■□□□□ 0.67
Slc6a1P31648 Acot3-202ENSMUST00000120927 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
Slc6a1P31648 Fam149b-202ENSMUST00000051915 1981 ntAPPRIS ALT2 TSL 5 BASIC19.26■□□□□ 0.67
Slc6a1P31648 Ttc7b-201ENSMUST00000062957 3446 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Slc6a1P31648 Bin1-201ENSMUST00000025239 2451 ntAPPRIS P3 TSL 2 BASIC19.25■□□□□ 0.67
Slc6a1P31648 Mpzl1-202ENSMUST00000111435 2285 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Slc6a1P31648 Gm37847-201ENSMUST00000192163 1497 ntBASIC19.25■□□□□ 0.67
Slc6a1P31648 Gm31748-201ENSMUST00000194938 1497 ntBASIC19.25■□□□□ 0.67
Slc6a1P31648 Chst14-201ENSMUST00000099546 2090 ntAPPRIS P1 BASIC19.24■□□□□ 0.67
Slc6a1P31648 Notumos-201ENSMUST00000151998 2659 ntBASIC19.24■□□□□ 0.67
Slc6a1P31648 AC157572.2-201ENSMUST00000226970 908 ntBASIC19.24■□□□□ 0.67
Slc6a1P31648 Fam60a-202ENSMUST00000081956 2737 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Slc6a1P31648 Il3ra-201ENSMUST00000090591 1614 ntAPPRIS P2 TSL 1 (best) BASIC19.24■□□□□ 0.67
Slc6a1P31648 Rasgef1c-203ENSMUST00000093142 2216 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
Slc6a1P31648 Yars2-201ENSMUST00000059955 1574 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Slc6a1P31648 Lhx2-201ENSMUST00000000253 2840 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Slc6a1P31648 Cib1-201ENSMUST00000065163 1047 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Slc6a1P31648 Ewsr1-205ENSMUST00000102930 2174 ntAPPRIS ALT2 TSL 5 BASIC19.23■□□□□ 0.67
Slc6a1P31648 Sdccag3-204ENSMUST00000114102 2193 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
Slc6a1P31648 Stambp-207ENSMUST00000206592 2152 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Slc6a1P31648 Particl-201ENSMUST00000205370 1560 ntBASIC19.23■□□□□ 0.67
Slc6a1P31648 Ppm1g-205ENSMUST00000202294 1868 ntTSL 5 BASIC19.22■□□□□ 0.67
Slc6a1P31648 Paqr3-203ENSMUST00000112969 2257 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Slc6a1P31648 Mta3-204ENSMUST00000112352 2674 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
Slc6a1P31648 Mpzl1-201ENSMUST00000068705 2171 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Slc6a1P31648 Sys1-201ENSMUST00000072452 1606 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Slc6a1P31648 Nelfe-204ENSMUST00000173357 1399 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Slc6a1P31648 2310050C09Rik-201ENSMUST00000163439 1078 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.67
Slc6a1P31648 Cetn4-202ENSMUST00000075537 762 ntTSL 3 BASIC19.21■□□□□ 0.67
Slc6a1P31648 Phf23-201ENSMUST00000018716 2006 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
Slc6a1P31648 Bpifb4-202ENSMUST00000109757 2420 ntAPPRIS P2 TSL 5 BASIC19.2■□□□□ 0.66
Slc6a1P31648 Morn4-201ENSMUST00000051772 1816 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Slc6a1P31648 Cdv3-205ENSMUST00000189896 1023 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
Slc6a1P31648 Rmnd5a-201ENSMUST00000002292 6165 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Slc6a1P31648 Lrrc24-201ENSMUST00000036247 1758 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Slc6a1P31648 Mindy2-202ENSMUST00000213380 2521 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
Slc6a1P31648 Gm26775-201ENSMUST00000180684 2197 ntTSL 5 BASIC19.17■□□□□ 0.66
Slc6a1P31648 Rbmxl2-201ENSMUST00000098135 1472 ntAPPRIS P1 BASIC19.17■□□□□ 0.66
Slc6a1P31648 Six5-201ENSMUST00000049454 3007 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Slc6a1P31648 Osbpl2-201ENSMUST00000040668 2805 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Slc6a1P31648 Sdccag3-201ENSMUST00000028293 2031 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
Slc6a1P31648 Fam3c-201ENSMUST00000081288 1487 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Slc6a1P31648 Rbfox3-206ENSMUST00000120061 2150 ntAPPRIS ALT2 TSL 5 BASIC19.16■□□□□ 0.66
Slc6a1P31648 Slc18a3-201ENSMUST00000191501 2413 ntAPPRIS P1 BASIC19.16■□□□□ 0.66
Slc6a1P31648 Zfp3-201ENSMUST00000060444 2061 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Slc6a1P31648 Eid2-201ENSMUST00000059596 1392 ntAPPRIS P1 BASIC19.16■□□□□ 0.66
Slc6a1P31648 Slc25a1-201ENSMUST00000003622 1678 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Slc6a1P31648 Dbndd2-202ENSMUST00000069385 1658 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Slc6a1P31648 Cdkl3-205ENSMUST00000109078 2216 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
Slc6a1P31648 Manf-202ENSMUST00000159283 2247 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Slc6a1P31648 Scx-201ENSMUST00000043089 1136 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Slc6a1P31648 Phf2-201ENSMUST00000035540 5494 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Slc6a1P31648 Arhgap9-204ENSMUST00000219511 2217 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
Slc6a1P31648 Evx2-202ENSMUST00000173623 1428 ntAPPRIS P2 TSL 1 (best) BASIC19.14■□□□□ 0.65
Slc6a1P31648 Dnttip1-201ENSMUST00000017443 1664 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Slc6a1P31648 C1ql2-201ENSMUST00000037286 2000 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Slc6a1P31648 AY074887-201ENSMUST00000054018 769 ntAPPRIS P1 BASIC19.13■□□□□ 0.65
Slc6a1P31648 Dazap1-202ENSMUST00000105361 1537 ntAPPRIS ALT1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Retrieved 100 of 76,532 protein–RNA pairs in 17.9 ms