Protein–RNA interactions for Protein: P02462

COL4A1, Collagen alpha-1(IV) chain, humanhuman

Predictions only

Length 1,669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1P02462 PQLC3-201ENST00000295083 1830 ntAPPRIS P1 TSL 1 (best) BASIC30.84■■■□□ 2.53
COL4A1P02462 RUNDC3A-206ENST00000590941 1675 ntTSL 1 (best) BASIC30.84■■■□□ 2.53
COL4A1P02462 SLC35A1-203ENST00000369557 1653 ntTSL 2 BASIC30.84■■■□□ 2.53
COL4A1P02462 HES4-204ENST00000484667 667 ntTSL 3 BASIC30.84■■■□□ 2.53
COL4A1P02462 FAM120AOS-202ENST00000423591 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC30.83■■■□□ 2.53
COL4A1P02462 MSRB1-206ENST00000622125 1363 ntAPPRIS ALT1 TSL 5 BASIC30.83■■■□□ 2.53
COL4A1P02462 MXRA7-203ENST00000449428 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC30.83■■■□□ 2.53
COL4A1P02462 MTCH1-202ENST00000373627 2057 ntAPPRIS P1 TSL 1 (best) BASIC30.83■■■□□ 2.53
COL4A1P02462 PHYH-201ENST00000263038 1577 ntAPPRIS P1 TSL 1 (best) BASIC30.82■■■□□ 2.52
COL4A1P02462 ERFE-207ENST00000546354 1065 ntAPPRIS P2 TSL 1 (best) BASIC30.82■■■□□ 2.52
COL4A1P02462 PBX1-202ENST00000367897 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC30.82■■■□□ 2.52
COL4A1P02462 CLK2-201ENST00000355560 2120 ntAPPRIS ALT1 TSL 5 BASIC30.82■■■□□ 2.52
COL4A1P02462 SSTR5-201ENST00000293897 1362 ntAPPRIS P1 BASIC30.82■■■□□ 2.52
COL4A1P02462 RSPO4-202ENST00000400634 722 ntTSL 1 (best) BASIC30.81■■■□□ 2.52
COL4A1P02462 CAPNS1-204ENST00000587718 1558 ntAPPRIS ALT2 TSL 1 (best) BASIC30.8■■■□□ 2.52
COL4A1P02462 AGFG1-205ENST00000409979 2089 ntAPPRIS ALT1 TSL 5 BASIC30.8■■■□□ 2.52
COL4A1P02462 PKIG-205ENST00000372891 1443 ntAPPRIS P1 TSL 2 BASIC30.8■■■□□ 2.52
COL4A1P02462 FGF20-201ENST00000180166 1688 ntAPPRIS P1 TSL 1 (best) BASIC30.8■■■□□ 2.52
COL4A1P02462 CERS2-205ENST00000368954 2505 ntAPPRIS P1 TSL 1 (best) BASIC30.8■■■□□ 2.52
COL4A1P02462 PQLC3-204ENST00000441908 1784 ntTSL 2 BASIC30.79■■■□□ 2.52
COL4A1P02462 CBX4-201ENST00000269397 2664 ntAPPRIS P2 TSL 1 (best) BASIC30.79■■■□□ 2.52
COL4A1P02462 RP9P-202ENST00000450133 1212 ntBASIC30.79■■■□□ 2.52
COL4A1P02462 AC008105.2-203ENST00000591361 550 ntTSL 4 BASIC30.79■■■□□ 2.52
COL4A1P02462 AL451085.2-201ENST00000605085 799 ntBASIC30.78■■■□□ 2.52
COL4A1P02462 GNAS-211ENST00000371095 1931 ntAPPRIS ALT1 TSL 1 (best) BASIC30.78■■■□□ 2.52
COL4A1P02462 SDF2L1-201ENST00000248958 865 ntAPPRIS P1 TSL 1 (best) BASIC30.78■■■□□ 2.52
COL4A1P02462 LY6H-201ENST00000342752 951 ntAPPRIS ALT2 TSL 1 (best) BASIC30.78■■■□□ 2.52
COL4A1P02462 LY6H-202ENST00000414417 1056 ntAPPRIS ALT2 TSL 1 (best) BASIC30.78■■■□□ 2.52
COL4A1P02462 LY6H-203ENST00000430474 925 ntAPPRIS P3 TSL 3 BASIC30.78■■■□□ 2.52
COL4A1P02462 SOCS2-202ENST00000536696 1065 ntAPPRIS P1 TSL 2 BASIC30.78■■■□□ 2.52
COL4A1P02462 ATXN3-252ENST00000620536 1044 ntTSL 5 BASIC30.77■■■□□ 2.52
COL4A1P02462 ATXN3-253ENST00000621269 936 ntTSL 5 BASIC30.77■■■□□ 2.52
COL4A1P02462 GSX1-201ENST00000302945 1663 ntAPPRIS P1 TSL 1 (best) BASIC30.77■■■□□ 2.52
COL4A1P02462 F8A1-201ENST00000610495 1713 ntAPPRIS P1 BASIC30.76■■■□□ 2.52
COL4A1P02462 FAH-213ENST00000561421 1549 ntAPPRIS P1 TSL 1 (best) BASIC30.75■■■□□ 2.51
COL4A1P02462 FOXA2-202ENST00000419308 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC30.75■■■□□ 2.51
COL4A1P02462 COL13A1-214ENST00000522165 2061 ntAPPRIS ALT2 TSL 5 BASIC30.75■■■□□ 2.51
COL4A1P02462 NELFB-202ENST00000634710 1887 ntAPPRIS P2 TSL 1 (best) BASIC30.75■■■□□ 2.51
COL4A1P02462 MAPK3-203ENST00000395199 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC30.74■■■□□ 2.51
COL4A1P02462 RNF130-205ENST00000521389 2263 ntAPPRIS P1 TSL 1 (best) BASIC30.74■■■□□ 2.51
COL4A1P02462 POTEF-201ENST00000361163 1586 ntTSL 5 BASIC30.74■■■□□ 2.51
COL4A1P02462 RTN4R-201ENST00000043402 2157 ntAPPRIS P2 TSL 1 (best) BASIC30.74■■■□□ 2.51
COL4A1P02462 ANKRD13D-211ENST00000511455 2139 ntAPPRIS P1 TSL 1 (best) BASIC30.73■■■□□ 2.51
COL4A1P02462 HIST2H3C-201ENST00000369158 1656 ntAPPRIS P1 BASIC30.73■■■□□ 2.51
COL4A1P02462 HIST2H3A-201ENST00000403683 1656 ntAPPRIS P1 BASIC30.73■■■□□ 2.51
COL4A1P02462 ANGPTL6-203ENST00000589181 1579 ntTSL 5 BASIC30.73■■■□□ 2.51
COL4A1P02462 HSPB6-202ENST00000587965 711 ntTSL 2 BASIC30.73■■■□□ 2.51
COL4A1P02462 TPRA1-209ENST00000489960 1903 ntAPPRIS P1 TSL 5 BASIC30.73■■■□□ 2.51
COL4A1P02462 ZFAND2B-201ENST00000289528 1314 ntAPPRIS P1 TSL 1 (best) BASIC30.73■■■□□ 2.51
COL4A1P02462 PAOX-206ENST00000480071 1324 ntTSL 1 (best) BASIC30.73■■■□□ 2.51
COL4A1P02462 TMEM200C-201ENST00000383490 1920 ntAPPRIS P1 BASIC30.72■■■□□ 2.51
COL4A1P02462 FKBP1A-204ENST00000400137 1622 ntAPPRIS P1 TSL 1 (best) BASIC30.72■■■□□ 2.51
COL4A1P02462 PFN2-211ENST00000489155 636 ntTSL 4 BASIC30.72■■■□□ 2.51
COL4A1P02462 AC104002.3-202ENST00000557170 1100 ntTSL 3 BASIC30.72■■■□□ 2.51
COL4A1P02462 AL359504.2-201ENST00000605506 1601 ntBASIC30.72■■■□□ 2.51
COL4A1P02462 NGB-201ENST00000298352 1884 ntAPPRIS P1 TSL 1 (best) BASIC30.72■■■□□ 2.51
COL4A1P02462 C9orf147-202ENST00000457681 561 ntTSL 2 BASIC30.71■■■□□ 2.51
COL4A1P02462 AC093390.2-201ENST00000638628 1007 ntTSL 5 BASIC30.71■■■□□ 2.51
COL4A1P02462 VEGFA-209ENST00000425836 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC30.71■■■□□ 2.51
COL4A1P02462 TBCC-201ENST00000372876 1616 ntAPPRIS P1 BASIC30.7■■■□□ 2.51
COL4A1P02462 PQLC1-202ENST00000357575 2475 ntAPPRIS ALT1 TSL 5 BASIC30.7■■■□□ 2.51
COL4A1P02462 ZDHHC23-206ENST00000498275 2055 ntAPPRIS ALT2 TSL 2 BASIC30.7■■■□□ 2.51
COL4A1P02462 BEX3-202ENST00000372634 753 ntTSL 2 BASIC30.69■■■□□ 2.5
COL4A1P02462 BARX1-202ENST00000401724 1323 ntTSL 1 (best) BASIC30.69■■■□□ 2.5
COL4A1P02462 IGFBP7-201ENST00000295666 1427 ntAPPRIS P3 TSL 1 (best) BASIC30.69■■■□□ 2.5
COL4A1P02462 PVT1_1.1-201ENST00000615125 194 ntBASIC30.68■■■□□ 2.5
COL4A1P02462 HSPE1-201ENST00000233893 950 ntAPPRIS P1 TSL 1 (best) BASIC30.68■■■□□ 2.5
COL4A1P02462 SERP2-201ENST00000379179 784 ntAPPRIS P1 TSL 1 (best) BASIC30.68■■■□□ 2.5
COL4A1P02462 SAE1-209ENST00000598840 1831 ntTSL 5 BASIC30.67■■■□□ 2.5
COL4A1P02462 MAPK9-202ENST00000347470 1509 ntTSL 5 BASIC30.67■■■□□ 2.5
COL4A1P02462 KRTAP5-5-201ENST00000399676 933 ntAPPRIS P1 BASIC30.67■■■□□ 2.5
COL4A1P02462 GPRC5B-202ENST00000535671 1215 ntAPPRIS ALT2 TSL 1 (best) BASIC30.67■■■□□ 2.5
COL4A1P02462 PDPK1-203ENST00000389224 2416 ntTSL 2 BASIC30.66■■■□□ 2.5
COL4A1P02462 SETBP1-202ENST00000426838 1785 ntAPPRIS ALT2 TSL 1 (best) BASIC30.66■■■□□ 2.5
COL4A1P02462 TSPY4-202ENST00000426950 1179 ntAPPRIS P5 TSL 5 BASIC30.66■■■□□ 2.5
COL4A1P02462 SLC30A10-202ENST00000366926 1915 ntAPPRIS P1 TSL 1 (best) BASIC30.65■■■□□ 2.5
COL4A1P02462 EMID1-202ENST00000404755 2049 ntTSL 5 BASIC30.64■■■□□ 2.5
COL4A1P02462 ARHGAP22-202ENST00000374170 2107 ntTSL 5 BASIC30.64■■■□□ 2.5
COL4A1P02462 SV2B-203ENST00000545111 2099 ntTSL 2 BASIC30.64■■■□□ 2.5
COL4A1P02462 SH3BP2-221ENST00000511747 2351 ntAPPRIS P3 TSL 1 (best) BASIC30.64■■■□□ 2.49
COL4A1P02462 ABHD12-202ENST00000376542 1725 ntTSL 1 (best) BASIC30.63■■■□□ 2.49
COL4A1P02462 WHAMMP3-201ENST00000611636 1609 ntBASIC30.63■■■□□ 2.49
COL4A1P02462 AC011448.1-201ENST00000555938 1100 ntAPPRIS P1 TSL 2 BASIC30.63■■■□□ 2.49
COL4A1P02462 ZNF688-203ENST00000563276 1492 ntTSL 2 BASIC30.63■■■□□ 2.49
COL4A1P02462 PCK2-202ENST00000396973 1830 ntTSL 1 (best) BASIC30.63■■■□□ 2.49
COL4A1P02462 RFFL-206ENST00000447669 2030 ntAPPRIS P1 TSL 5 BASIC30.63■■■□□ 2.49
COL4A1P02462 SSBP4-201ENST00000270061 1768 ntAPPRIS P3 TSL 1 (best) BASIC30.62■■■□□ 2.49
COL4A1P02462 WDSUB1-205ENST00000409990 1920 ntAPPRIS P1 TSL 2 BASIC30.62■■■□□ 2.49
COL4A1P02462 MIR3960-201ENST00000583311 91 ntBASIC30.62■■■□□ 2.49
COL4A1P02462 AC010980.1-201ENST00000587192 1142 ntBASIC30.62■■■□□ 2.49
COL4A1P02462 LDLRAD3-203ENST00000528989 1879 ntTSL 1 (best) BASIC30.62■■■□□ 2.49
COL4A1P02462 AC116025.2-201ENST00000576632 443 ntTSL 3 BASIC30.62■■■□□ 2.49
COL4A1P02462 DRD5P2-201ENST00000421395 2012 ntBASIC30.61■■■□□ 2.49
COL4A1P02462 FTCD-201ENST00000291670 1905 ntAPPRIS P1 TSL 1 (best) BASIC30.61■■■□□ 2.49
COL4A1P02462 RIPPLY2-202ENST00000369689 664 ntAPPRIS P2 TSL 1 (best) BASIC30.61■■■□□ 2.49
COL4A1P02462 AC139426.1-201ENST00000568218 2529 ntBASIC30.61■■■□□ 2.49
COL4A1P02462 CCDC61-204ENST00000595358 1817 ntAPPRIS P2 TSL 5 BASIC30.6■■■□□ 2.49
COL4A1P02462 NAXE-203ENST00000368235 1125 ntAPPRIS P1 TSL 1 (best) BASIC30.6■■■□□ 2.49
COL4A1P02462 TMEM120A-214ENST00000493111 1456 ntAPPRIS P1 TSL 1 (best) BASIC30.6■■■□□ 2.49
COL4A1P02462 CUEDC1-201ENST00000360238 2193 ntAPPRIS P1 TSL 2 BASIC30.59■■■□□ 2.49
Retrieved 100 of 98,524 protein–RNA pairs in 20.2 ms