Protein–RNA interactions for Protein: F7BJK1

Pcdh1, Protocadherin 1 (Fragment), mousemouse

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pcdh1F7BJK1 P4htm-201ENSMUST00000006853 1841 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Pcdh1F7BJK1 Mnx1-202ENSMUST00000165512 2245 ntAPPRIS P2 TSL 1 (best) BASIC20.28■□□□□ 0.84
Pcdh1F7BJK1 Dync1i1-203ENSMUST00000115556 2718 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
Pcdh1F7BJK1 Ing2-201ENSMUST00000080353 2812 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Pcdh1F7BJK1 Camsap1-212ENSMUST00000183461 5090 ntAPPRIS ALT2 TSL 5 BASIC20.27■□□□□ 0.84
Pcdh1F7BJK1 Chst14-201ENSMUST00000099546 2090 ntAPPRIS P1 BASIC20.27■□□□□ 0.84
Pcdh1F7BJK1 AC163623.1-201ENSMUST00000213738 727 ntAPPRIS P1 TSL 3 BASIC20.27■□□□□ 0.84
Pcdh1F7BJK1 Whrn-202ENSMUST00000063672 2804 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
Pcdh1F7BJK1 Zfp513-201ENSMUST00000031562 2213 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
Pcdh1F7BJK1 Rhbdl1-201ENSMUST00000026831 1711 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Pcdh1F7BJK1 Prph-201ENSMUST00000024249 1769 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
Pcdh1F7BJK1 Pax1-201ENSMUST00000109968 2643 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Pcdh1F7BJK1 Slc30a3-201ENSMUST00000031037 2089 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Pcdh1F7BJK1 Dcaf15-201ENSMUST00000041367 2312 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Pcdh1F7BJK1 Cnot6-201ENSMUST00000020624 2498 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Pcdh1F7BJK1 Rab3il1-202ENSMUST00000117641 2004 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
Pcdh1F7BJK1 Cotl1-201ENSMUST00000034285 1596 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Pcdh1F7BJK1 Fank1-204ENSMUST00000209511 1392 ntTSL 5 BASIC20.24■□□□□ 0.83
Pcdh1F7BJK1 Antxr1-204ENSMUST00000204805 2156 ntAPPRIS ALT2 TSL 5 BASIC20.24■□□□□ 0.83
Pcdh1F7BJK1 Mapkap1-201ENSMUST00000113123 1530 ntTSL 5 BASIC20.24■□□□□ 0.83
Pcdh1F7BJK1 Bod1-202ENSMUST00000109415 799 ntAPPRIS P1 TSL 2 BASIC20.24■□□□□ 0.83
Pcdh1F7BJK1 Cops6-202ENSMUST00000110951 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
Pcdh1F7BJK1 Lsm4-204ENSMUST00000210071 575 ntTSL 5 BASIC20.24■□□□□ 0.83
Pcdh1F7BJK1 B230322F03Rik-201ENSMUST00000181932 1569 ntBASIC20.24■□□□□ 0.83
Pcdh1F7BJK1 A330023F24Rik-201ENSMUST00000181226 955 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
Pcdh1F7BJK1 Gm37136-201ENSMUST00000194368 194 ntBASIC20.23■□□□□ 0.83
Pcdh1F7BJK1 Wwc1-201ENSMUST00000018993 4531 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Pcdh1F7BJK1 Grap-201ENSMUST00000004959 1662 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Pcdh1F7BJK1 Dlx2-201ENSMUST00000024159 2473 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Pcdh1F7BJK1 Peli3-201ENSMUST00000025834 1971 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Pcdh1F7BJK1 March9-201ENSMUST00000040307 3037 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Pcdh1F7BJK1 Neurl4-201ENSMUST00000061837 5188 ntAPPRIS P3 TSL 5 BASIC20.21■□□□□ 0.83
Pcdh1F7BJK1 Tsen34-203ENSMUST00000108629 1238 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Pcdh1F7BJK1 Olfm2-203ENSMUST00000215999 1895 ntAPPRIS ALT2 TSL 3 BASIC20.21■□□□□ 0.83
Pcdh1F7BJK1 Kat2b-201ENSMUST00000000724 4653 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Pcdh1F7BJK1 Nkx2-4-201ENSMUST00000067020 1725 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Pcdh1F7BJK1 Hif1a-203ENSMUST00000110464 1759 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Pcdh1F7BJK1 Sh3gl3-201ENSMUST00000032874 1647 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Pcdh1F7BJK1 Rhou-201ENSMUST00000045487 3371 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Pcdh1F7BJK1 Slc15a4-201ENSMUST00000031367 2732 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Pcdh1F7BJK1 Slc16a11-205ENSMUST00000126388 1938 ntAPPRIS P1 TSL 5 BASIC20.2■□□□□ 0.82
Pcdh1F7BJK1 Ppp1r14b-201ENSMUST00000070850 919 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Pcdh1F7BJK1 Dhrs13-201ENSMUST00000021187 1779 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Pcdh1F7BJK1 Nt5c3-201ENSMUST00000031793 1676 ntAPPRIS P3 TSL 1 (best) BASIC20.19■□□□□ 0.82
Pcdh1F7BJK1 Rfx5-204ENSMUST00000107255 2350 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
Pcdh1F7BJK1 A230087F16Rik-201ENSMUST00000181055 2098 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
Pcdh1F7BJK1 Pou2f2-204ENSMUST00000108416 1754 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
Pcdh1F7BJK1 Asf1a-201ENSMUST00000020004 2201 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Pcdh1F7BJK1 A230020J21Rik-202ENSMUST00000192407 1649 ntTSL 2 BASIC20.18■□□□□ 0.82
Pcdh1F7BJK1 Spg7-201ENSMUST00000108868 845 ntTSL 2 BASIC20.18■□□□□ 0.82
Pcdh1F7BJK1 Kras-201ENSMUST00000032399 4678 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Pcdh1F7BJK1 Notum-202ENSMUST00000106177 2212 ntAPPRIS P1 TSL 5 BASIC20.18■□□□□ 0.82
Pcdh1F7BJK1 Ctnnd2-201ENSMUST00000081728 5944 ntAPPRIS P2 TSL 1 (best) BASIC20.17■□□□□ 0.82
Pcdh1F7BJK1 Ptbp3-208ENSMUST00000172768 2147 ntAPPRIS ALT2 TSL 5 BASIC20.17■□□□□ 0.82
Pcdh1F7BJK1 Slc25a1-201ENSMUST00000003622 1678 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Pcdh1F7BJK1 Actr5-201ENSMUST00000045644 2402 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Pcdh1F7BJK1 Nrarp-201ENSMUST00000104999 2582 ntAPPRIS P1 BASIC20.16■□□□□ 0.82
Pcdh1F7BJK1 Sdccag3-201ENSMUST00000028293 2031 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
Pcdh1F7BJK1 Rpl19-ps4-201ENSMUST00000167150 625 ntBASIC20.16■□□□□ 0.82
Pcdh1F7BJK1 Rcor3-207ENSMUST00000192866 1844 ntAPPRIS ALT2 TSL 5 BASIC20.16■□□□□ 0.82
Pcdh1F7BJK1 Pitx2-202ENSMUST00000042587 2271 ntAPPRIS ALT1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Pcdh1F7BJK1 Onecut3-201ENSMUST00000051773 4776 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Pcdh1F7BJK1 Agps-202ENSMUST00000111952 2589 ntTSL 2 BASIC20.14■□□□□ 0.82
Pcdh1F7BJK1 Gm6934-201ENSMUST00000194780 1905 ntBASIC20.14■□□□□ 0.81
Pcdh1F7BJK1 AC061963.1-201ENSMUST00000213180 1765 ntTSL 5 BASIC20.14■□□□□ 0.81
Pcdh1F7BJK1 Gm19582-201ENSMUST00000187511 841 ntTSL 2 BASIC20.14■□□□□ 0.81
Pcdh1F7BJK1 Nkain2-201ENSMUST00000092602 558 ntBASIC20.14■□□□□ 0.81
Pcdh1F7BJK1 Sdccag3-204ENSMUST00000114102 2193 ntAPPRIS P3 TSL 1 (best) BASIC20.14■□□□□ 0.81
Pcdh1F7BJK1 Syce2-202ENSMUST00000136026 1686 ntAPPRIS P3 TSL 1 (best) BASIC20.13■□□□□ 0.81
Pcdh1F7BJK1 Cbln1-202ENSMUST00000169693 1699 ntAPPRIS P1 TSL 5 BASIC20.13■□□□□ 0.81
Pcdh1F7BJK1 AC150314.2-201ENSMUST00000214135 834 ntTSL 5 BASIC20.13■□□□□ 0.81
Pcdh1F7BJK1 H2afy-201ENSMUST00000016081 2046 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Pcdh1F7BJK1 Dmrt3-201ENSMUST00000048935 2390 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Pcdh1F7BJK1 Spire2-201ENSMUST00000010298 2330 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Pcdh1F7BJK1 St7-209ENSMUST00000115420 2094 ntTSL 5 BASIC20.12■□□□□ 0.81
Pcdh1F7BJK1 Gm13042-201ENSMUST00000119244 1955 ntBASIC20.12■□□□□ 0.81
Pcdh1F7BJK1 Rbm45-201ENSMUST00000046389 1898 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Pcdh1F7BJK1 Cetn4-202ENSMUST00000075537 762 ntTSL 3 BASIC20.12■□□□□ 0.81
Pcdh1F7BJK1 Fbxl5-205ENSMUST00000121736 2144 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
Pcdh1F7BJK1 Opn3-201ENSMUST00000027809 1913 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Pcdh1F7BJK1 Scx-201ENSMUST00000043089 1136 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Pcdh1F7BJK1 Gm20208-202ENSMUST00000219905 1528 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
Pcdh1F7BJK1 Ctdspl-201ENSMUST00000073109 4589 ntAPPRIS P2 TSL 1 (best) BASIC20.11■□□□□ 0.81
Pcdh1F7BJK1 4932443I19Rik-201ENSMUST00000166277 799 ntAPPRIS P2 TSL 1 (best) BASIC20.1■□□□□ 0.81
Pcdh1F7BJK1 Eci1-201ENSMUST00000024946 1091 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Pcdh1F7BJK1 Syt6-204ENSMUST00000118563 1843 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
Pcdh1F7BJK1 Trim9-208ENSMUST00000221370 2393 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
Pcdh1F7BJK1 Fancf-201ENSMUST00000169357 1691 ntAPPRIS P1 BASIC20.1■□□□□ 0.81
Pcdh1F7BJK1 Ybx3-202ENSMUST00000087865 1684 ntAPPRIS ALT2 TSL 1 (best) BASIC20.1■□□□□ 0.81
Pcdh1F7BJK1 Fip1l1-202ENSMUST00000113534 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC20.09■□□□□ 0.81
Pcdh1F7BJK1 Kcnk2-205ENSMUST00000192723 1642 ntAPPRIS ALT1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Pcdh1F7BJK1 2810459M11Rik-201ENSMUST00000027429 1225 ntAPPRIS ALT2 TSL 1 (best) BASIC20.09■□□□□ 0.81
Pcdh1F7BJK1 BC037034-205ENSMUST00000159649 2093 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
Pcdh1F7BJK1 Gm12523-201ENSMUST00000148844 599 ntTSL 5 BASIC20.08■□□□□ 0.81
Pcdh1F7BJK1 Gm42809-201ENSMUST00000198429 1138 ntBASIC20.08■□□□□ 0.81
Pcdh1F7BJK1 Dnajb2-202ENSMUST00000082158 1253 ntAPPRIS P1 TSL 5 BASIC20.08■□□□□ 0.81
Pcdh1F7BJK1 Htra1-201ENSMUST00000006367 2041 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
Pcdh1F7BJK1 Ubtf-210ENSMUST00000174302 4692 ntAPPRIS P3 TSL 5 BASIC20.08■□□□□ 0.8
Pcdh1F7BJK1 Crim1-201ENSMUST00000112498 5995 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
Pcdh1F7BJK1 Cdc42bpg-201ENSMUST00000025681 5995 ntAPPRIS P1 TSL 5 BASIC20.08■□□□□ 0.8
Retrieved 100 of 76,532 protein–RNA pairs in 28.2 ms