Protein–RNA interactions for Protein: B9EKX1

Ptchd4, Patched domain-containing protein 4, mousemouse

Predictions only

Length 904 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ptchd4B9EKX1 Scn1b-201ENSMUST00000098548 1573 ntAPPRIS P1 TSL 1 (best) BASIC24.52■■□□□ 1.52
Ptchd4B9EKX1 Bag1-203ENSMUST00000191273 1348 ntAPPRIS ALT2 TSL 1 (best) BASIC24.52■■□□□ 1.52
Ptchd4B9EKX1 Fam50b-202ENSMUST00000221037 1345 ntAPPRIS P1 TSL 1 (best) BASIC24.52■■□□□ 1.52
Ptchd4B9EKX1 Tmem106c-201ENSMUST00000064200 1635 ntAPPRIS P1 TSL 1 (best) BASIC24.51■■□□□ 1.51
Ptchd4B9EKX1 2310061I04Rik-202ENSMUST00000146451 2081 ntTSL 1 (best) BASIC24.51■■□□□ 1.51
Ptchd4B9EKX1 Fam89b-203ENSMUST00000161368 1160 ntTSL 1 (best) BASIC24.51■■□□□ 1.51
Ptchd4B9EKX1 Foxe3-201ENSMUST00000050940 867 ntAPPRIS P1 BASIC24.51■■□□□ 1.51
Ptchd4B9EKX1 AC161180.1-201ENSMUST00000223439 933 ntAPPRIS P1 BASIC24.5■■□□□ 1.51
Ptchd4B9EKX1 Lsm4-201ENSMUST00000034311 925 ntAPPRIS P1 TSL 1 (best) BASIC24.5■■□□□ 1.51
Ptchd4B9EKX1 Runx2-211ENSMUST00000162629 1607 ntAPPRIS ALT2 TSL 5 BASIC24.5■■□□□ 1.51
Ptchd4B9EKX1 AC117769.4-201ENSMUST00000225679 685 ntBASIC24.49■■□□□ 1.51
Ptchd4B9EKX1 Tmem42-201ENSMUST00000084733 1041 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
Ptchd4B9EKX1 Kif1c-205ENSMUST00000152618 1943 ntTSL 1 (best) BASIC24.49■■□□□ 1.51
Ptchd4B9EKX1 Rcan1-202ENSMUST00000060005 2324 ntTSL 1 (best) BASIC24.49■■□□□ 1.51
Ptchd4B9EKX1 Cited2-201ENSMUST00000038107 1979 ntAPPRIS P1 TSL 1 (best) BASIC24.48■■□□□ 1.51
Ptchd4B9EKX1 Dhrs11-201ENSMUST00000047560 1254 ntAPPRIS P1 TSL 1 (best) BASIC24.48■■□□□ 1.51
Ptchd4B9EKX1 Cpe-201ENSMUST00000048967 2117 ntAPPRIS P1 TSL 1 (best) BASIC24.48■■□□□ 1.51
Ptchd4B9EKX1 St7-205ENSMUST00000081635 2115 ntTSL 1 (best) BASIC24.48■■□□□ 1.51
Ptchd4B9EKX1 H2-Q5-202ENSMUST00000172979 998 ntAPPRIS P1 TSL 5 BASIC24.47■■□□□ 1.51
Ptchd4B9EKX1 Gm5812-201ENSMUST00000061073 957 ntBASIC24.47■■□□□ 1.51
Ptchd4B9EKX1 Clptm1l-201ENSMUST00000022102 2340 ntAPPRIS P1 TSL 1 (best) BASIC24.47■■□□□ 1.51
Ptchd4B9EKX1 Terf2-203ENSMUST00000116425 2471 ntTSL 1 (best) BASIC24.46■■□□□ 1.51
Ptchd4B9EKX1 Gm2415-202ENSMUST00000134688 401 ntTSL 2 BASIC24.45■■□□□ 1.5
Ptchd4B9EKX1 Tmem127-202ENSMUST00000174288 842 ntTSL 2 BASIC24.45■■□□□ 1.5
Ptchd4B9EKX1 Mef2a-201ENSMUST00000032776 2476 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.5
Ptchd4B9EKX1 2810002D19Rik-201ENSMUST00000152313 2040 ntTSL 1 (best) BASIC24.45■■□□□ 1.5
Ptchd4B9EKX1 Siah1a-201ENSMUST00000045296 1968 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
Ptchd4B9EKX1 Hopx-203ENSMUST00000120827 1217 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
Ptchd4B9EKX1 Snx21-203ENSMUST00000152471 1243 ntTSL 1 (best) BASIC24.44■■□□□ 1.5
Ptchd4B9EKX1 Gm43592-201ENSMUST00000196922 1165 ntBASIC24.44■■□□□ 1.5
Ptchd4B9EKX1 Dlg1-203ENSMUST00000100001 4711 ntAPPRIS ALT2 TSL 5 BASIC24.44■■□□□ 1.5
Ptchd4B9EKX1 Dyrk1a-202ENSMUST00000119878 5759 ntAPPRIS P1 TSL 5 BASIC24.43■■□□□ 1.5
Ptchd4B9EKX1 Fus-201ENSMUST00000077609 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC24.43■■□□□ 1.5
Ptchd4B9EKX1 Nrsn1-201ENSMUST00000057866 2222 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
Ptchd4B9EKX1 Fgf16-201ENSMUST00000033581 1645 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
Ptchd4B9EKX1 Sox3-201ENSMUST00000135107 2065 ntAPPRIS P1 BASIC24.42■■□□□ 1.5
Ptchd4B9EKX1 Arhgap9-203ENSMUST00000219026 1946 ntAPPRIS P2 TSL 1 (best) BASIC24.42■■□□□ 1.5
Ptchd4B9EKX1 Sec24d-208ENSMUST00000200333 307 ntTSL 1 (best) BASIC24.42■■□□□ 1.5
Ptchd4B9EKX1 Slc16a11-207ENSMUST00000136328 1403 ntTSL 5 BASIC24.42■■□□□ 1.5
Ptchd4B9EKX1 Tmem235-201ENSMUST00000093905 1820 ntAPPRIS P1 TSL 5 BASIC24.42■■□□□ 1.5
Ptchd4B9EKX1 Eif5a-208ENSMUST00000108611 1353 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
Ptchd4B9EKX1 Dexi-201ENSMUST00000038281 1389 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
Ptchd4B9EKX1 Rcor2-201ENSMUST00000066646 2801 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
Ptchd4B9EKX1 Dusp2-201ENSMUST00000028846 1617 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
Ptchd4B9EKX1 Faim-202ENSMUST00000112911 803 ntAPPRIS ALT1 TSL 2 BASIC24.4■■□□□ 1.5
Ptchd4B9EKX1 Mpnd-208ENSMUST00000159996 1444 ntAPPRIS ALT2 TSL 5 BASIC24.4■■□□□ 1.5
Ptchd4B9EKX1 Olfm2-203ENSMUST00000215999 1895 ntAPPRIS ALT2 TSL 3 BASIC24.39■■□□□ 1.5
Ptchd4B9EKX1 Srd5a3-201ENSMUST00000031143 1747 ntAPPRIS P2 TSL 1 (best) BASIC24.39■■□□□ 1.5
Ptchd4B9EKX1 Gm12905-201ENSMUST00000153814 658 ntTSL 2 BASIC24.39■■□□□ 1.49
Ptchd4B9EKX1 AC166358.2-201ENSMUST00000223403 734 ntTSL 5 BASIC24.39■■□□□ 1.49
Ptchd4B9EKX1 Coprs-201ENSMUST00000033839 793 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.49
Ptchd4B9EKX1 Sox17-202ENSMUST00000116652 1512 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.49
Ptchd4B9EKX1 Slc44a1-203ENSMUST00000107646 1974 ntTSL 5 BASIC24.38■■□□□ 1.49
Ptchd4B9EKX1 Csrp1-201ENSMUST00000027677 1823 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
Ptchd4B9EKX1 Csrp1-202ENSMUST00000097561 1828 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
Ptchd4B9EKX1 Dynll1-202ENSMUST00000112090 729 ntAPPRIS P1 TSL 2 BASIC24.38■■□□□ 1.49
Ptchd4B9EKX1 Gm29735-201ENSMUST00000209599 660 ntAPPRIS P1 BASIC24.38■■□□□ 1.49
Ptchd4B9EKX1 Gm10499-202ENSMUST00000174778 1698 ntTSL 1 (best) BASIC24.37■■□□□ 1.49
Ptchd4B9EKX1 Actr3b-202ENSMUST00000128727 2031 ntTSL 1 (best) BASIC24.37■■□□□ 1.49
Ptchd4B9EKX1 Rasgef1c-203ENSMUST00000093142 2216 ntAPPRIS P3 TSL 1 (best) BASIC24.37■■□□□ 1.49
Ptchd4B9EKX1 Dapk2-201ENSMUST00000034944 1772 ntAPPRIS P1 TSL 1 (best) BASIC24.37■■□□□ 1.49
Ptchd4B9EKX1 Fam220a-201ENSMUST00000067145 2198 ntAPPRIS P1 TSL 1 (best) BASIC24.36■■□□□ 1.49
Ptchd4B9EKX1 Gsc2-201ENSMUST00000012279 1172 ntAPPRIS P1 TSL 1 (best) BASIC24.36■■□□□ 1.49
Ptchd4B9EKX1 Gm7544-201ENSMUST00000222426 828 ntAPPRIS P1 BASIC24.36■■□□□ 1.49
Ptchd4B9EKX1 Plekha3-201ENSMUST00000111920 2534 ntAPPRIS P1 TSL 1 (best) BASIC24.36■■□□□ 1.49
Ptchd4B9EKX1 Ube2k-206ENSMUST00000201984 1449 ntTSL 3 BASIC24.35■■□□□ 1.49
Ptchd4B9EKX1 Cldnd1-204ENSMUST00000162057 1540 ntAPPRIS P1 TSL 5 BASIC24.35■■□□□ 1.49
Ptchd4B9EKX1 March5-202ENSMUST00000112391 1293 ntTSL 1 (best) BASIC24.35■■□□□ 1.49
Ptchd4B9EKX1 Susd3-203ENSMUST00000119721 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC24.35■■□□□ 1.49
Ptchd4B9EKX1 Jdp2-201ENSMUST00000050687 1643 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
Ptchd4B9EKX1 Sin3b-202ENSMUST00000109950 1024 ntTSL 1 (best) BASIC24.34■■□□□ 1.49
Ptchd4B9EKX1 Gm38287-201ENSMUST00000195193 2051 ntTSL 3 BASIC24.34■■□□□ 1.49
Ptchd4B9EKX1 A430027H14Rik-201ENSMUST00000191809 1467 ntBASIC24.33■■□□□ 1.49
Ptchd4B9EKX1 Prph-202ENSMUST00000047104 1865 ntAPPRIS P3 TSL 1 (best) BASIC24.33■■□□□ 1.49
Ptchd4B9EKX1 Pxmp2-201ENSMUST00000031472 1041 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
Ptchd4B9EKX1 Hras-202ENSMUST00000097957 1199 ntAPPRIS P1 TSL 2 BASIC24.33■■□□□ 1.49
Ptchd4B9EKX1 AC164433.2-201ENSMUST00000226346 1701 ntBASIC24.32■■□□□ 1.48
Ptchd4B9EKX1 Spryd7-202ENSMUST00000100496 1459 ntTSL 1 (best) BASIC24.32■■□□□ 1.48
Ptchd4B9EKX1 Pdgfa-204ENSMUST00000110897 1287 ntAPPRIS P1 TSL 5 BASIC24.32■■□□□ 1.48
Ptchd4B9EKX1 Rab40c-209ENSMUST00000179998 2456 ntAPPRIS P1 TSL 5 BASIC24.32■■□□□ 1.48
Ptchd4B9EKX1 Zfp422-201ENSMUST00000057540 2375 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
Ptchd4B9EKX1 Dbndd2-202ENSMUST00000069385 1658 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
Ptchd4B9EKX1 Gm6217-201ENSMUST00000222182 829 ntAPPRIS P1 BASIC24.31■■□□□ 1.48
Ptchd4B9EKX1 Tbc1d10a-206ENSMUST00000180088 1921 ntAPPRIS P2 TSL 1 (best) BASIC24.31■■□□□ 1.48
Ptchd4B9EKX1 Ctbp1-211ENSMUST00000202868 2436 ntAPPRIS ALT1 TSL 1 (best) BASIC24.3■■□□□ 1.48
Ptchd4B9EKX1 Arhgap39-204ENSMUST00000176219 542 ntTSL 5 BASIC24.3■■□□□ 1.48
Ptchd4B9EKX1 Nsd1-203ENSMUST00000224156 1149 ntBASIC24.3■■□□□ 1.48
Ptchd4B9EKX1 Prr5-202ENSMUST00000171460 1719 ntAPPRIS ALT2 TSL 1 (best) BASIC24.3■■□□□ 1.48
Ptchd4B9EKX1 Cmas-201ENSMUST00000032419 1760 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
Ptchd4B9EKX1 Btg3-201ENSMUST00000023570 1414 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
Ptchd4B9EKX1 Adat3-204ENSMUST00000038411 1411 ntAPPRIS P1 TSL 2 BASIC24.29■■□□□ 1.48
Ptchd4B9EKX1 Cckbr-202ENSMUST00000181339 1326 ntTSL 1 (best) BASIC24.29■■□□□ 1.48
Ptchd4B9EKX1 Tmem150a-202ENSMUST00000132243 1478 ntTSL 5 BASIC24.28■■□□□ 1.48
Ptchd4B9EKX1 Tmx4-202ENSMUST00000110119 596 ntTSL 2 BASIC24.28■■□□□ 1.48
Ptchd4B9EKX1 Gm13238-201ENSMUST00000117655 780 ntBASIC24.28■■□□□ 1.48
Ptchd4B9EKX1 Clpp-201ENSMUST00000002735 1207 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
Ptchd4B9EKX1 Exosc8-201ENSMUST00000029316 1300 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
Ptchd4B9EKX1 6430628N08Rik-202ENSMUST00000165938 1602 ntTSL 5 BASIC24.28■■□□□ 1.48
Ptchd4B9EKX1 Rnf115-201ENSMUST00000029740 2209 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
Ptchd4B9EKX1 Gng12-203ENSMUST00000114224 680 ntAPPRIS P1 TSL 3 BASIC24.27■■□□□ 1.48
Retrieved 100 of 76,532 protein–RNA pairs in 10.4 ms