Protein–RNA interactions for Protein: A0A0A6YYE2

Trbv3, T cell receptor beta, variable 3 (Fragment), mousemouse

Predictions only

Length 117 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trbv3A0A0A6YYE2 Ppm1g-205ENSMUST00000202294 1868 ntTSL 5 BASIC17.44■□□□□ 0.38
Trbv3A0A0A6YYE2 Tmem70-203ENSMUST00000177501 1636 ntAPPRIS P3 TSL 1 (best) BASIC17.43■□□□□ 0.38
Trbv3A0A0A6YYE2 Npas1-201ENSMUST00000002053 2091 ntAPPRIS P1 TSL 5 BASIC17.43■□□□□ 0.38
Trbv3A0A0A6YYE2 Hibadh-201ENSMUST00000031788 1825 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Trbv3A0A0A6YYE2 Sec22c-202ENSMUST00000111560 2669 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Trbv3A0A0A6YYE2 Dleu2-206ENSMUST00000182537 318 ntTSL 2 BASIC17.43■□□□□ 0.38
Trbv3A0A0A6YYE2 Tmem55b-201ENSMUST00000049312 1594 ntAPPRIS ALT1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Trbv3A0A0A6YYE2 Mageb3-201ENSMUST00000104936 2341 ntAPPRIS P1 BASIC17.43■□□□□ 0.38
Trbv3A0A0A6YYE2 Kcnip2-202ENSMUST00000079431 2302 ntAPPRIS ALT1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Trbv3A0A0A6YYE2 Kctd2-201ENSMUST00000103035 1764 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Trbv3A0A0A6YYE2 Gipc1-201ENSMUST00000019577 1522 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Trbv3A0A0A6YYE2 Rmnd5a-201ENSMUST00000002292 6165 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Trbv3A0A0A6YYE2 Larp4b-204ENSMUST00000188939 2658 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
Trbv3A0A0A6YYE2 Rpsa-204ENSMUST00000217317 1599 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Trbv3A0A0A6YYE2 Rfx5-205ENSMUST00000107260 2355 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
Trbv3A0A0A6YYE2 Gm8109-201ENSMUST00000194076 746 ntBASIC17.42■□□□□ 0.38
Trbv3A0A0A6YYE2 Rab3il1-202ENSMUST00000117641 2004 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
Trbv3A0A0A6YYE2 Kctd5-201ENSMUST00000017090 2443 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Trbv3A0A0A6YYE2 Sdccag3-204ENSMUST00000114102 2193 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
Trbv3A0A0A6YYE2 Tmem158-201ENSMUST00000068140 1712 ntAPPRIS P1 BASIC17.41■□□□□ 0.38
Trbv3A0A0A6YYE2 Zfp36l1-202ENSMUST00000165114 1934 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
Trbv3A0A0A6YYE2 Gm26711-201ENSMUST00000180866 1833 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
Trbv3A0A0A6YYE2 Gm4419-202ENSMUST00000226239 1431 ntBASIC17.4■□□□□ 0.38
Trbv3A0A0A6YYE2 C1ql2-201ENSMUST00000037286 2000 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Trbv3A0A0A6YYE2 D1Ertd622e-203ENSMUST00000149927 2703 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Trbv3A0A0A6YYE2 Hlx-201ENSMUST00000048572 2278 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Trbv3A0A0A6YYE2 Rfx5-204ENSMUST00000107255 2350 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.37
Trbv3A0A0A6YYE2 Acss2-203ENSMUST00000103142 2145 ntTSL 5 BASIC17.39■□□□□ 0.37
Trbv3A0A0A6YYE2 Kcnq5-201ENSMUST00000029667 6562 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
Trbv3A0A0A6YYE2 Snx7-201ENSMUST00000029639 2021 ntAPPRIS P2 TSL 1 (best) BASIC17.38■□□□□ 0.37
Trbv3A0A0A6YYE2 Pou6f1-202ENSMUST00000073837 4953 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
Trbv3A0A0A6YYE2 2310050C09Rik-201ENSMUST00000163439 1078 ntAPPRIS P1 TSL 2 BASIC17.38■□□□□ 0.37
Trbv3A0A0A6YYE2 Mapk13-201ENSMUST00000004986 1392 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Trbv3A0A0A6YYE2 Lbx1-201ENSMUST00000099401 2484 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Trbv3A0A0A6YYE2 Ptbp3-208ENSMUST00000172768 2147 ntAPPRIS ALT2 TSL 5 BASIC17.38■□□□□ 0.37
Trbv3A0A0A6YYE2 Mpzl1-201ENSMUST00000068705 2171 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
Trbv3A0A0A6YYE2 BC037034-201ENSMUST00000048421 2490 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Trbv3A0A0A6YYE2 Gm43863-201ENSMUST00000203822 1192 ntBASIC17.37■□□□□ 0.37
Trbv3A0A0A6YYE2 AC157572.2-201ENSMUST00000226970 908 ntBASIC17.37■□□□□ 0.37
Trbv3A0A0A6YYE2 Arglu1-201ENSMUST00000048545 3197 ntAPPRIS P1 TSL 2 BASIC17.37■□□□□ 0.37
Trbv3A0A0A6YYE2 Cbln1-202ENSMUST00000169693 1699 ntAPPRIS P1 TSL 5 BASIC17.36■□□□□ 0.37
Trbv3A0A0A6YYE2 Gm38160-201ENSMUST00000193090 2499 ntBASIC17.36■□□□□ 0.37
Trbv3A0A0A6YYE2 Nisch-201ENSMUST00000022469 5559 ntAPPRIS P3 TSL 2 BASIC17.36■□□□□ 0.37
Trbv3A0A0A6YYE2 Trim33-201ENSMUST00000029444 8875 ntAPPRIS P4 TSL 1 (best) BASIC17.36■□□□□ 0.37
Trbv3A0A0A6YYE2 Vmac-201ENSMUST00000067931 2174 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
Trbv3A0A0A6YYE2 Cdkl3-205ENSMUST00000109078 2216 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
Trbv3A0A0A6YYE2 Fbxl3-204ENSMUST00000132004 2534 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Trbv3A0A0A6YYE2 Gna13-202ENSMUST00000106702 914 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Trbv3A0A0A6YYE2 Tmed7-203ENSMUST00000151189 1348 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Trbv3A0A0A6YYE2 Prph-201ENSMUST00000024249 1769 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
Trbv3A0A0A6YYE2 Morn4-201ENSMUST00000051772 1816 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Trbv3A0A0A6YYE2 Cacnb3-202ENSMUST00000109150 2670 ntTSL 5 BASIC17.34■□□□□ 0.37
Trbv3A0A0A6YYE2 Rsrc1-202ENSMUST00000065047 2736 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
Trbv3A0A0A6YYE2 Smarcc1-201ENSMUST00000088716 5717 ntAPPRIS P2 TSL 1 (best) BASIC17.34■□□□□ 0.37
Trbv3A0A0A6YYE2 E130102H24Rik-201ENSMUST00000144604 741 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
Trbv3A0A0A6YYE2 Tbxa2r-202ENSMUST00000220312 1919 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Trbv3A0A0A6YYE2 Rmdn2-208ENSMUST00000225357 2118 ntAPPRIS P1 BASIC17.34■□□□□ 0.37
Trbv3A0A0A6YYE2 Taf4-204ENSMUST00000227325 4380 ntAPPRIS ALT2 BASIC17.34■□□□□ 0.37
Trbv3A0A0A6YYE2 Nudt9-201ENSMUST00000031250 1488 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Trbv3A0A0A6YYE2 Rap1a-201ENSMUST00000090678 2407 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Trbv3A0A0A6YYE2 Smurf2-202ENSMUST00000103067 5290 ntTSL 5 BASIC17.33■□□□□ 0.37
Trbv3A0A0A6YYE2 Crip2-201ENSMUST00000084882 1439 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Trbv3A0A0A6YYE2 Cdkn2b-201ENSMUST00000097981 1393 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Trbv3A0A0A6YYE2 Gmeb1-202ENSMUST00000105964 1925 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Trbv3A0A0A6YYE2 Serpinb6a-206ENSMUST00000167163 1654 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
Trbv3A0A0A6YYE2 4930577N17Rik-201ENSMUST00000139771 1625 ntBASIC17.32■□□□□ 0.36
Trbv3A0A0A6YYE2 A530058N18Rik-204ENSMUST00000141209 709 ntTSL 5 BASIC17.32■□□□□ 0.36
Trbv3A0A0A6YYE2 Slc18a3-201ENSMUST00000191501 2413 ntAPPRIS P1 BASIC17.32■□□□□ 0.36
Trbv3A0A0A6YYE2 Marc1-201ENSMUST00000048462 2039 ntAPPRIS P2 TSL 1 (best) BASIC17.31■□□□□ 0.36
Trbv3A0A0A6YYE2 Syce2-202ENSMUST00000136026 1686 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
Trbv3A0A0A6YYE2 Adgrb1-202ENSMUST00000170845 2704 ntTSL 5 BASIC17.3■□□□□ 0.36
Trbv3A0A0A6YYE2 Fbxo6-201ENSMUST00000030858 1346 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Trbv3A0A0A6YYE2 Dusp26-205ENSMUST00000170204 1627 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
Trbv3A0A0A6YYE2 Zcchc11-201ENSMUST00000043368 6054 ntAPPRIS P2 TSL 5 BASIC17.3■□□□□ 0.36
Trbv3A0A0A6YYE2 Gm24804-201ENSMUST00000174982 85 ntBASIC17.3■□□□□ 0.36
Trbv3A0A0A6YYE2 Slc30a3-201ENSMUST00000031037 2089 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Trbv3A0A0A6YYE2 Bpifb4-202ENSMUST00000109757 2420 ntAPPRIS P2 TSL 5 BASIC17.29■□□□□ 0.36
Trbv3A0A0A6YYE2 Prpsap2-201ENSMUST00000004955 1837 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Trbv3A0A0A6YYE2 Ptpre-202ENSMUST00000209256 2593 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Trbv3A0A0A6YYE2 Inafm2-201ENSMUST00000149978 3053 ntAPPRIS P1 BASIC17.29■□□□□ 0.36
Trbv3A0A0A6YYE2 Dnttip1-202ENSMUST00000109326 476 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Trbv3A0A0A6YYE2 Gm26775-201ENSMUST00000180684 2197 ntTSL 5 BASIC17.29■□□□□ 0.36
Trbv3A0A0A6YYE2 Ski-201ENSMUST00000030917 5522 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Trbv3A0A0A6YYE2 A530058N18Rik-203ENSMUST00000135729 1405 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Trbv3A0A0A6YYE2 Idh3a-205ENSMUST00000217484 2580 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Trbv3A0A0A6YYE2 Wtap-203ENSMUST00000159551 2060 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
Trbv3A0A0A6YYE2 Tmeff1-202ENSMUST00000123476 1224 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Trbv3A0A0A6YYE2 1810049J17Rik-201ENSMUST00000180521 462 ntAPPRIS P1 BASIC17.28■□□□□ 0.36
Trbv3A0A0A6YYE2 Atpaf1-203ENSMUST00000176047 2330 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Trbv3A0A0A6YYE2 Mpzl1-202ENSMUST00000111435 2285 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Trbv3A0A0A6YYE2 Arpc2-203ENSMUST00000113820 1439 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Trbv3A0A0A6YYE2 Best2-202ENSMUST00000209322 1944 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Trbv3A0A0A6YYE2 Dyrk2-201ENSMUST00000004281 6129 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Trbv3A0A0A6YYE2 Hoxa11-201ENSMUST00000048026 2287 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Trbv3A0A0A6YYE2 Usp39-201ENSMUST00000070345 2244 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Trbv3A0A0A6YYE2 Rab21-201ENSMUST00000020343 4602 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Trbv3A0A0A6YYE2 Etv4-202ENSMUST00000107176 2377 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
Trbv3A0A0A6YYE2 Etv4-201ENSMUST00000017868 2395 ntAPPRIS ALT1 TSL 5 BASIC17.27■□□□□ 0.36
Trbv3A0A0A6YYE2 Ccdc122-202ENSMUST00000095625 1195 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
Trbv3A0A0A6YYE2 Ewsr1-205ENSMUST00000102930 2174 ntAPPRIS ALT2 TSL 5 BASIC17.27■□□□□ 0.36
Retrieved 100 of 76,532 protein–RNA pairs in 421.7 ms