Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 EIF5A-202ENST00000336458 1511 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
FOXA2Q9Y261 ZDHHC16-201ENST00000345745 1519 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
FOXA2Q9Y261 AP000251.1-201ENST00000433071 822 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
FOXA2Q9Y261 SETBP1-202ENST00000426838 1785 ntAPPRIS ALT2 TSL 1 (best) BASIC20.12■□□□□ 0.81
FOXA2Q9Y261 AKAP17A-202ENST00000381261 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC20.12■□□□□ 0.81
FOXA2Q9Y261 TAZ-205ENST00000475699 1862 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
FOXA2Q9Y261 IRAK1-205ENST00000429936 2127 ntTSL 5 BASIC20.11■□□□□ 0.81
FOXA2Q9Y261 FGF19-201ENST00000294312 2447 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
FOXA2Q9Y261 MSANTD2-201ENST00000239614 2495 ntTSL 2 BASIC20.1■□□□□ 0.81
FOXA2Q9Y261 BCAP31-201ENST00000345046 1589 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
FOXA2Q9Y261 HS3ST6-201ENST00000454677 1273 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
FOXA2Q9Y261 FKBP1A-210ENST00000614856 562 ntTSL 2 BASIC20.1■□□□□ 0.81
FOXA2Q9Y261 ZNF692-201ENST00000306601 1931 ntAPPRIS P3 TSL 1 (best) BASIC20.1■□□□□ 0.81
FOXA2Q9Y261 HTRA1-201ENST00000368984 2120 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
FOXA2Q9Y261 TOP1MT-208ENST00000519148 1868 ntTSL 2 BASIC20.09■□□□□ 0.81
FOXA2Q9Y261 NXNL1-201ENST00000301944 946 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
FOXA2Q9Y261 PRKAR1B-203ENST00000403562 1917 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
FOXA2Q9Y261 C2orf88-204ENST00000409870 1441 ntAPPRIS P1 TSL 2 BASIC20.09■□□□□ 0.81
FOXA2Q9Y261 OVOL2-201ENST00000278780 1555 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
FOXA2Q9Y261 VRK2-202ENST00000412104 1916 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
FOXA2Q9Y261 DAZAP1-202ENST00000336761 2290 ntTSL 5 BASIC20.08■□□□□ 0.81
FOXA2Q9Y261 NELFB-202ENST00000634710 1887 ntAPPRIS P2 TSL 1 (best) BASIC20.08■□□□□ 0.81
FOXA2Q9Y261 PDCD2-209ENST00000542896 1082 ntTSL 2 BASIC20.08■□□□□ 0.81
FOXA2Q9Y261 C11orf95-204ENST00000546282 390 ntTSL 3 BASIC20.08■□□□□ 0.81
FOXA2Q9Y261 MIR7108-201ENST00000614319 87 ntBASIC20.08■□□□□ 0.81
FOXA2Q9Y261 MXI1-201ENST00000239007 2424 ntAPPRIS ALT1 TSL 1 (best) BASIC20.08■□□□□ 0.8
FOXA2Q9Y261 PWWP2B-201ENST00000305233 2651 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
FOXA2Q9Y261 ARMC10-205ENST00000428183 2445 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
FOXA2Q9Y261 DUX4L11-201ENST00000611504 1267 ntBASIC20.07■□□□□ 0.8
FOXA2Q9Y261 DUX4L12-201ENST00000614593 1267 ntBASIC20.07■□□□□ 0.8
FOXA2Q9Y261 DUX4L14-201ENST00000621227 1267 ntBASIC20.07■□□□□ 0.8
FOXA2Q9Y261 FLT1-202ENST00000539099 1911 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
FOXA2Q9Y261 DHFR-203ENST00000505337 1719 ntAPPRIS P1 TSL 2 BASIC20.07■□□□□ 0.8
FOXA2Q9Y261 PLPPR3-201ENST00000359894 2387 ntAPPRIS P3 TSL 1 (best) BASIC20.07■□□□□ 0.8
FOXA2Q9Y261 TIGD3-201ENST00000309880 2012 ntAPPRIS P1 TSL 2 BASIC20.07■□□□□ 0.8
FOXA2Q9Y261 RHBDD2-202ENST00000318622 1878 ntTSL 2 BASIC20.06■□□□□ 0.8
FOXA2Q9Y261 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC20.06■□□□□ 0.8
FOXA2Q9Y261 ZNF653-201ENST00000293771 2240 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
FOXA2Q9Y261 PLBD2-202ENST00000545182 2321 ntTSL 2 BASIC20.05■□□□□ 0.8
FOXA2Q9Y261 DCUN1D5-201ENST00000260247 1337 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
FOXA2Q9Y261 GPS1-204ENST00000392358 2276 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
FOXA2Q9Y261 CFAP99-207ENST00000635017 2298 ntTSL 5 BASIC20.05■□□□□ 0.8
FOXA2Q9Y261 DEDD-212ENST00000545495 2329 ntAPPRIS P1 TSL 3 BASIC20.04■□□□□ 0.8
FOXA2Q9Y261 AC231981.1-201ENST00000450917 974 ntTSL 3 BASIC20.04■□□□□ 0.8
FOXA2Q9Y261 MEN1-204ENST00000377313 1871 ntAPPRIS P3 TSL 2 BASIC20.04■□□□□ 0.8
FOXA2Q9Y261 GATA4-209ENST00000622443 1982 ntTSL 5 BASIC20.04■□□□□ 0.8
FOXA2Q9Y261 VSIG8-201ENST00000368100 1818 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
FOXA2Q9Y261 TSEN34-204ENST00000429671 1912 ntTSL 2 BASIC20.04■□□□□ 0.8
FOXA2Q9Y261 AC091060.1-201ENST00000623524 1766 ntBASIC20.03■□□□□ 0.8
FOXA2Q9Y261 GSX2-202ENST00000503800 1181 ntTSL 5 BASIC20.03■□□□□ 0.8
FOXA2Q9Y261 RNF166-209ENST00000567844 633 ntTSL 5 BASIC20.03■□□□□ 0.8
FOXA2Q9Y261 CHML-204ENST00000638121 920 ntTSL 2 BASIC20.03■□□□□ 0.8
FOXA2Q9Y261 SSBP3-202ENST00000357475 1533 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
FOXA2Q9Y261 AGPS-202ENST00000409888 815 ntTSL 4 BASIC20.02■□□□□ 0.8
FOXA2Q9Y261 TRIM52-AS1-203ENST00000509252 529 ntTSL 3 BASIC20.02■□□□□ 0.8
FOXA2Q9Y261 DUX4L13-201ENST00000554103 1267 ntBASIC20.02■□□□□ 0.8
FOXA2Q9Y261 DUX4L15-201ENST00000611059 1267 ntBASIC20.02■□□□□ 0.8
FOXA2Q9Y261 DUX4L23-201ENST00000615195 1269 ntBASIC20.02■□□□□ 0.8
FOXA2Q9Y261 DUX4L24-201ENST00000617576 1269 ntBASIC20.02■□□□□ 0.8
FOXA2Q9Y261 DUX4L22-201ENST00000618238 1269 ntBASIC20.02■□□□□ 0.8
FOXA2Q9Y261 DUX4L20-201ENST00000619712 1269 ntBASIC20.02■□□□□ 0.8
FOXA2Q9Y261 DUX4L21-201ENST00000622058 1269 ntBASIC20.02■□□□□ 0.8
FOXA2Q9Y261 DUX4L10-201ENST00000622460 1267 ntBASIC20.02■□□□□ 0.8
FOXA2Q9Y261 DUX4L25-201ENST00000624915 1269 ntBASIC20.02■□□□□ 0.8
FOXA2Q9Y261 AL449106.1-201ENST00000608517 1980 ntBASIC20.02■□□□□ 0.8
FOXA2Q9Y261 CAPNS1-215ENST00000628018 1509 ntAPPRIS ALT2 TSL 5 BASIC20.02■□□□□ 0.79
FOXA2Q9Y261 EBPL-201ENST00000242827 914 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
FOXA2Q9Y261 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
FOXA2Q9Y261 EMID1-202ENST00000404755 2049 ntTSL 5 BASIC20.01■□□□□ 0.79
FOXA2Q9Y261 POU2F2-208ENST00000529952 1716 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
FOXA2Q9Y261 OTUD5-202ENST00000376488 2692 ntAPPRIS ALT1 TSL 1 (best) BASIC20■□□□□ 0.79
FOXA2Q9Y261 ANKRD16-201ENST00000191063 1567 ntTSL 3 BASIC20■□□□□ 0.79
FOXA2Q9Y261 AURKAIP1-203ENST00000338370 1072 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
FOXA2Q9Y261 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC20■□□□□ 0.79
FOXA2Q9Y261 AC187653.1-201ENST00000506382 702 ntAPPRIS P1 TSL 5 BASIC20■□□□□ 0.79
FOXA2Q9Y261 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC20■□□□□ 0.79
FOXA2Q9Y261 KIAA2013-201ENST00000376572 2815 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
FOXA2Q9Y261 RRAD-202ENST00000420652 1476 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
FOXA2Q9Y261 NTN3-201ENST00000293973 1986 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
FOXA2Q9Y261 CHSY1-201ENST00000254190 4550 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
FOXA2Q9Y261 PTPA-202ENST00000347048 1989 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
FOXA2Q9Y261 CAPN10-204ENST00000354082 1999 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
FOXA2Q9Y261 TMEM147-202ENST00000392204 935 ntTSL 2 BASIC19.98■□□□□ 0.79
FOXA2Q9Y261 MACF1-219ENST00000484793 834 ntTSL 2 BASIC19.98■□□□□ 0.79
FOXA2Q9Y261 PVT1-219ENST00000523427 938 ntTSL 3 BASIC19.98■□□□□ 0.79
FOXA2Q9Y261 RHOC-202ENST00000339083 1418 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
FOXA2Q9Y261 C14orf80-203ENST00000354560 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC19.98■□□□□ 0.79
FOXA2Q9Y261 P2RY2-202ENST00000393596 2174 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
FOXA2Q9Y261 GPR150-201ENST00000380007 2065 ntAPPRIS P1 BASIC19.98■□□□□ 0.79
FOXA2Q9Y261 TXNL4A-208ENST00000588162 752 ntTSL 2 BASIC19.97■□□□□ 0.79
FOXA2Q9Y261 P2RX2-203ENST00000350048 1344 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
FOXA2Q9Y261 AC110285.7-201ENST00000624417 1536 ntBASIC19.97■□□□□ 0.79
FOXA2Q9Y261 RTN2-208ENST00000590526 2357 ntTSL 5 BASIC19.97■□□□□ 0.79
FOXA2Q9Y261 ALG2-203ENST00000476832 1880 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
FOXA2Q9Y261 CNNM2-201ENST00000369875 2059 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
FOXA2Q9Y261 CDC16-211ENST00000628084 2058 ntTSL 5 BASIC19.96■□□□□ 0.79
FOXA2Q9Y261 C19orf47-202ENST00000392035 2126 ntAPPRIS ALT2 TSL 1 (best) BASIC19.96■□□□□ 0.79
FOXA2Q9Y261 GPR25-201ENST00000304244 1224 ntAPPRIS P1 BASIC19.96■□□□□ 0.79
FOXA2Q9Y261 RANBP1-202ENST00000402752 1132 ntAPPRIS ALT1 TSL 1 (best) BASIC19.96■□□□□ 0.79
FOXA2Q9Y261 AC145676.1-201ENST00000514988 2004 ntBASIC19.96■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 45.6 ms