Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 AC100797.4-201ENST00000631653 1827 ntBASIC48.06■■■■■ 5.28
SHROOM4Q9ULL8 MTURN-203ENST00000409688 843 ntTSL 2 BASIC48.06■■■■■ 5.28
SHROOM4Q9ULL8 AC009831.1-201ENST00000580420 1582 ntBASIC48.05■■■■■ 5.28
SHROOM4Q9ULL8 IZUMO4-202ENST00000395301 1021 ntAPPRIS ALT2 TSL 1 (best) BASIC48.04■■■■■ 5.28
SHROOM4Q9ULL8 RASGRP2-204ENST00000377487 642 ntTSL 2 BASIC48.04■■■■■ 5.28
SHROOM4Q9ULL8 MED25-210ENST00000612854 801 ntTSL 5 BASIC48.04■■■■■ 5.28
SHROOM4Q9ULL8 MED25-213ENST00000620467 1293 ntTSL 1 (best) BASIC48.04■■■■■ 5.28
SHROOM4Q9ULL8 MED25-214ENST00000622402 642 ntTSL 5 BASIC48.04■■■■■ 5.28
SHROOM4Q9ULL8 AC009299.2-201ENST00000482477 511 ntBASIC48.03■■■■■ 5.28
SHROOM4Q9ULL8 C14orf80-203ENST00000354560 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC48.02■■■■■ 5.28
SHROOM4Q9ULL8 AMZ2-201ENST00000359783 1722 ntTSL 5 BASIC48.02■■■■■ 5.28
SHROOM4Q9ULL8 ARMC10-211ENST00000541300 2266 ntTSL 1 (best) BASIC48.02■■■■■ 5.28
SHROOM4Q9ULL8 AMN-201ENST00000299155 1907 ntAPPRIS P2 TSL 1 (best) BASIC48.02■■■■■ 5.28
SHROOM4Q9ULL8 FAM120C-203ENST00000477084 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC48.02■■■■■ 5.28
SHROOM4Q9ULL8 ST7-205ENST00000393446 2114 ntTSL 5 BASIC48.01■■■■■ 5.28
SHROOM4Q9ULL8 WBP1-201ENST00000233615 1294 ntAPPRIS P2 TSL 1 (best) BASIC48.01■■■■■ 5.28
SHROOM4Q9ULL8 YIF1A-201ENST00000359461 943 ntTSL 2 BASIC48.01■■■■■ 5.28
SHROOM4Q9ULL8 YIF1A-203ENST00000376901 1124 ntAPPRIS P1 TSL 1 (best) BASIC48.01■■■■■ 5.28
SHROOM4Q9ULL8 MIR1-1HG-202ENST00000624914 1220 ntTSL 1 (best) BASIC48.01■■■■■ 5.28
SHROOM4Q9ULL8 CCDC88C-205ENST00000553403 1651 ntTSL 1 (best) BASIC48.01■■■■■ 5.28
SHROOM4Q9ULL8 PAOX-206ENST00000480071 1324 ntTSL 1 (best) BASIC48■■■■■ 5.27
SHROOM4Q9ULL8 SP8-201ENST00000361443 1714 ntAPPRIS P3 TSL 1 (best) BASIC48■■■■■ 5.27
SHROOM4Q9ULL8 SPATA33-209ENST00000579310 1490 ntAPPRIS ALT2 TSL 2 BASIC47.99■■■■■ 5.27
SHROOM4Q9ULL8 AC116025.2-201ENST00000576632 443 ntTSL 3 BASIC47.99■■■■■ 5.27
SHROOM4Q9ULL8 VIPR2-204ENST00000421760 717 ntTSL 3 BASIC47.97■■■■■ 5.27
SHROOM4Q9ULL8 ZFAND2B-208ENST00000409594 2021 ntTSL 2 BASIC47.97■■■■■ 5.27
SHROOM4Q9ULL8 PSMG3-202ENST00000288607 1391 ntAPPRIS P1 TSL 1 (best) BASIC47.96■■■■■ 5.27
SHROOM4Q9ULL8 PHF20L1-207ENST00000395379 1998 ntTSL 5 BASIC47.95■■■■■ 5.27
SHROOM4Q9ULL8 ABCB10P1-201ENST00000614297 2181 ntBASIC47.95■■■■■ 5.27
SHROOM4Q9ULL8 CBX4-201ENST00000269397 2664 ntAPPRIS P2 TSL 1 (best) BASIC47.95■■■■■ 5.27
SHROOM4Q9ULL8 REST-210ENST00000638187 1334 ntTSL 5 BASIC47.94■■■■■ 5.27
SHROOM4Q9ULL8 ARL6IP4-208ENST00000439686 796 ntAPPRIS ALT2 TSL 3 BASIC47.94■■■■■ 5.26
SHROOM4Q9ULL8 ZFAND2B-201ENST00000289528 1314 ntAPPRIS P1 TSL 1 (best) BASIC47.93■■■■■ 5.26
SHROOM4Q9ULL8 SNX15-202ENST00000377244 1939 ntAPPRIS P1 TSL 1 (best) BASIC47.93■■■■■ 5.26
SHROOM4Q9ULL8 SIRT3-201ENST00000382743 2543 ntAPPRIS P2 TSL 1 (best) BASIC47.92■■■■■ 5.26
SHROOM4Q9ULL8 ABHD17B-202ENST00000377041 1312 ntAPPRIS P4 TSL 1 (best) BASIC47.91■■■■■ 5.26
SHROOM4Q9ULL8 CRELD2-203ENST00000404488 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC47.91■■■■■ 5.26
SHROOM4Q9ULL8 GUSBP5-201ENST00000418136 578 ntBASIC47.9■■■■■ 5.26
SHROOM4Q9ULL8 AC055876.1-201ENST00000430589 895 ntTSL 2 BASIC47.9■■■■■ 5.26
SHROOM4Q9ULL8 RDX-210ENST00000530301 1549 ntTSL 1 (best) BASIC47.89■■■■■ 5.26
SHROOM4Q9ULL8 GSR-205ENST00000541648 1410 ntTSL 1 (best) BASIC47.89■■■■■ 5.26
SHROOM4Q9ULL8 C17orf49-201ENST00000439424 850 ntAPPRIS P3 TSL 1 (best) BASIC47.89■■■■■ 5.26
SHROOM4Q9ULL8 MPP6-203ENST00000409761 1703 ntTSL 5 BASIC47.87■■■■■ 5.25
SHROOM4Q9ULL8 PTPA-210ENST00000414510 1153 ntTSL 1 (best) BASIC47.87■■■■■ 5.25
SHROOM4Q9ULL8 HES6-204ENST00000409182 863 ntTSL 2 BASIC47.86■■■■■ 5.25
SHROOM4Q9ULL8 DUX4L18-201ENST00000553347 1267 ntBASIC47.86■■■■■ 5.25
SHROOM4Q9ULL8 FKBP1A-205ENST00000439640 1583 ntTSL 3 BASIC47.86■■■■■ 5.25
SHROOM4Q9ULL8 MPC1-201ENST00000341756 976 ntTSL 1 (best) BASIC47.85■■■■■ 5.25
SHROOM4Q9ULL8 MPC1-206ENST00000621630 977 ntAPPRIS ALT1 TSL 5 BASIC47.85■■■■■ 5.25
SHROOM4Q9ULL8 MPC1-207ENST00000621685 1192 ntTSL 5 BASIC47.85■■■■■ 5.25
SHROOM4Q9ULL8 CLEC11A-201ENST00000250340 1419 ntAPPRIS P1 TSL 1 (best) BASIC47.85■■■■■ 5.25
SHROOM4Q9ULL8 PNMT-201ENST00000269582 1253 ntAPPRIS P1 TSL 1 (best) BASIC47.84■■■■■ 5.25
SHROOM4Q9ULL8 UBE2E3-213ENST00000602959 909 ntAPPRIS P1 TSL 5 BASIC47.84■■■■■ 5.25
SHROOM4Q9ULL8 AC131212.1-201ENST00000613771 668 ntBASIC47.84■■■■■ 5.25
SHROOM4Q9ULL8 FOXE3-201ENST00000335071 1981 ntAPPRIS P1 BASIC47.84■■■■■ 5.25
SHROOM4Q9ULL8 AL139393.2-201ENST00000608721 2025 ntBASIC47.84■■■■■ 5.25
SHROOM4Q9ULL8 UBE2D2-205ENST00000505548 1113 ntTSL 1 (best) BASIC47.84■■■■■ 5.25
SHROOM4Q9ULL8 FAM78B-201ENST00000338353 1597 ntAPPRIS P1 TSL 1 (best) BASIC47.84■■■■■ 5.25
SHROOM4Q9ULL8 FOXQ1-201ENST00000296839 2309 ntAPPRIS P1 BASIC47.83■■■■■ 5.25
SHROOM4Q9ULL8 TPI1-210ENST00000613953 1460 ntTSL 1 (best) BASIC47.83■■■■■ 5.25
SHROOM4Q9ULL8 SOHLH1-202ENST00000425225 1411 ntAPPRIS ALT2 TSL 5 BASIC47.83■■■■■ 5.25
SHROOM4Q9ULL8 C9orf47-202ENST00000375850 859 ntAPPRIS ALT2 TSL 3 BASIC47.82■■■■■ 5.25
SHROOM4Q9ULL8 CTAG1B-201ENST00000328435 748 ntAPPRIS P1 TSL 1 (best) BASIC47.81■■■■■ 5.24
SHROOM4Q9ULL8 TMEM151B-201ENST00000438774 1140 ntAPPRIS ALT2 TSL 3 BASIC47.81■■■■■ 5.24
SHROOM4Q9ULL8 LTC4S-205ENST00000486713 496 ntTSL 2 BASIC47.81■■■■■ 5.24
SHROOM4Q9ULL8 CTAG1A-202ENST00000599837 748 ntAPPRIS P1 TSL 1 (best) BASIC47.81■■■■■ 5.24
SHROOM4Q9ULL8 AP004833.2-201ENST00000532228 1454 ntBASIC47.81■■■■■ 5.24
SHROOM4Q9ULL8 DEXI-202ENST00000469379 1393 ntAPPRIS P1 TSL 2 BASIC47.8■■■■■ 5.24
SHROOM4Q9ULL8 C17orf74-202ENST00000574034 1287 ntTSL 1 (best) BASIC47.8■■■■■ 5.24
SHROOM4Q9ULL8 AC133552.2-201ENST00000619106 1032 ntBASIC47.8■■■■■ 5.24
SHROOM4Q9ULL8 AC093390.2-201ENST00000638628 1007 ntTSL 5 BASIC47.8■■■■■ 5.24
SHROOM4Q9ULL8 TMEM238-201ENST00000444469 1000 ntAPPRIS P1 TSL 1 (best) BASIC47.79■■■■■ 5.24
SHROOM4Q9ULL8 DCBLD1-201ENST00000296955 1979 ntAPPRIS P2 TSL 1 (best) BASIC47.78■■■■■ 5.24
SHROOM4Q9ULL8 CD63-201ENST00000257857 1070 ntAPPRIS P1 TSL 1 (best) BASIC47.78■■■■■ 5.24
SHROOM4Q9ULL8 GLTP-201ENST00000318348 2356 ntAPPRIS P1 TSL 1 (best) BASIC47.78■■■■■ 5.24
SHROOM4Q9ULL8 AC053527.1-201ENST00000502790 685 ntTSL 3 BASIC47.78■■■■■ 5.24
SHROOM4Q9ULL8 ZEB1-AS1-205ENST00000605946 382 ntTSL 5 BASIC47.78■■■■■ 5.24
SHROOM4Q9ULL8 NRXN1-228ENST00000628364 2444 ntTSL 5 BASIC47.76■■■■■ 5.24
SHROOM4Q9ULL8 ST7-202ENST00000323984 2142 ntTSL 5 BASIC47.75■■■■■ 5.23
SHROOM4Q9ULL8 ST7-207ENST00000393449 2127 ntTSL 5 BASIC47.75■■■■■ 5.23
SHROOM4Q9ULL8 WDR86-204ENST00000477459 1428 ntTSL 2 BASIC47.75■■■■■ 5.23
SHROOM4Q9ULL8 DUX4L9-201ENST00000449051 1259 ntBASIC47.75■■■■■ 5.23
SHROOM4Q9ULL8 AC074183.2-201ENST00000623112 922 ntBASIC47.75■■■■■ 5.23
SHROOM4Q9ULL8 ABCB10P3-201ENST00000561950 2166 ntBASIC47.75■■■■■ 5.23
SHROOM4Q9ULL8 NKIRAS2-208ENST00000462043 585 ntTSL 4 BASIC47.74■■■■■ 5.23
SHROOM4Q9ULL8 RPL27A-206ENST00000530022 878 ntTSL 1 (best) BASIC47.74■■■■■ 5.23
SHROOM4Q9ULL8 PITX3-202ENST00000539804 1187 ntAPPRIS P1 TSL 5 BASIC47.74■■■■■ 5.23
SHROOM4Q9ULL8 RAET1E-AS1-203ENST00000606915 1210 ntTSL 1 (best) BASIC47.74■■■■■ 5.23
SHROOM4Q9ULL8 CCNYL1-203ENST00000392209 1952 ntTSL 2 BASIC47.74■■■■■ 5.23
SHROOM4Q9ULL8 AL121987.2-201ENST00000418602 1578 ntTSL 2 BASIC47.74■■■■■ 5.23
SHROOM4Q9ULL8 IL17D-201ENST00000304920 1861 ntAPPRIS P1 TSL 1 (best) BASIC47.74■■■■■ 5.23
SHROOM4Q9ULL8 SDF2L1-201ENST00000248958 865 ntAPPRIS P1 TSL 1 (best) BASIC47.73■■■■■ 5.23
SHROOM4Q9ULL8 S100A6-201ENST00000368719 665 ntAPPRIS P1 TSL 1 (best) BASIC47.73■■■■■ 5.23
SHROOM4Q9ULL8 CENPX-202ENST00000392359 805 ntAPPRIS P1 TSL 2 BASIC47.73■■■■■ 5.23
SHROOM4Q9ULL8 CGREF1-203ENST00000402394 1906 ntAPPRIS P2 TSL 2 BASIC47.73■■■■■ 5.23
SHROOM4Q9ULL8 ANKS1B-203ENST00000341752 2115 ntTSL 2 BASIC47.73■■■■■ 5.23
SHROOM4Q9ULL8 RCC1L-202ENST00000614461 2419 ntTSL 1 (best) BASIC47.72■■■■■ 5.23
SHROOM4Q9ULL8 C16orf95-201ENST00000253461 953 ntAPPRIS P3 TSL 1 (best) BASIC47.72■■■■■ 5.23
SHROOM4Q9ULL8 FHL2-202ENST00000344213 1769 ntTSL 1 (best) BASIC47.71■■■■■ 5.23
SHROOM4Q9ULL8 RP9P-202ENST00000450133 1212 ntBASIC47.71■■■■■ 5.23
Retrieved 100 of 98,524 protein–RNA pairs in 18.4 ms