Protein–RNA interactions for Protein: Q9R1C7

Prpf40a, Pre-mRNA-processing factor 40 homolog A, mousemouse

Known RBP Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Prpf40aQ9R1C7 St6galnac6-203ENSMUST00000095044 2394 ntAPPRIS P3 TSL 1 (best) BASIC24.85■■□□□ 1.57
Prpf40aQ9R1C7 Mxra7-201ENSMUST00000021170 2063 ntAPPRIS P3 TSL 1 (best) BASIC24.84■■□□□ 1.57
Prpf40aQ9R1C7 Ubp1-204ENSMUST00000214095 2320 ntAPPRIS ALT1 TSL 1 (best) BASIC24.84■■□□□ 1.57
Prpf40aQ9R1C7 Prph-202ENSMUST00000047104 1865 ntAPPRIS P3 TSL 1 (best) BASIC24.84■■□□□ 1.57
Prpf40aQ9R1C7 Krtap17-1-201ENSMUST00000105049 761 ntAPPRIS P1 BASIC24.84■■□□□ 1.57
Prpf40aQ9R1C7 Efhd2-201ENSMUST00000036854 2381 ntAPPRIS P1 TSL 1 (best) BASIC24.84■■□□□ 1.57
Prpf40aQ9R1C7 Sh3d21-202ENSMUST00000097891 2384 ntAPPRIS P1 TSL 1 (best) BASIC24.83■■□□□ 1.57
Prpf40aQ9R1C7 Gm13889-201ENSMUST00000099689 1386 ntBASIC24.83■■□□□ 1.57
Prpf40aQ9R1C7 Pan3-209ENSMUST00000176600 5541 ntAPPRIS ALT2 TSL 5 BASIC24.83■■□□□ 1.57
Prpf40aQ9R1C7 Pard6a-201ENSMUST00000093195 1265 ntAPPRIS P3 TSL 1 (best) BASIC24.83■■□□□ 1.57
Prpf40aQ9R1C7 Pdcd4-203ENSMUST00000165617 1806 ntAPPRIS P1 TSL 1 (best) BASIC24.82■■□□□ 1.56
Prpf40aQ9R1C7 Lpcat4-201ENSMUST00000028554 2275 ntAPPRIS P1 TSL 1 (best) BASIC24.82■■□□□ 1.56
Prpf40aQ9R1C7 AC167019.3-201ENSMUST00000228225 1266 ntBASIC24.82■■□□□ 1.56
Prpf40aQ9R1C7 Ttc9-201ENSMUST00000036116 2042 ntAPPRIS P1 TSL 1 (best) BASIC24.82■■□□□ 1.56
Prpf40aQ9R1C7 Tada2b-202ENSMUST00000119916 1321 ntTSL 5 BASIC24.82■■□□□ 1.56
Prpf40aQ9R1C7 Fam126a-206ENSMUST00000197617 2288 ntTSL 5 BASIC24.82■■□□□ 1.56
Prpf40aQ9R1C7 Gipc1-201ENSMUST00000019577 1522 ntAPPRIS P1 TSL 1 (best) BASIC24.81■■□□□ 1.56
Prpf40aQ9R1C7 Tmpo-203ENSMUST00000092219 1854 ntTSL 1 (best) BASIC24.81■■□□□ 1.56
Prpf40aQ9R1C7 Ran-202ENSMUST00000111343 2423 ntAPPRIS P1 TSL 1 (best) BASIC24.81■■□□□ 1.56
Prpf40aQ9R1C7 Gm4419-202ENSMUST00000226239 1431 ntBASIC24.81■■□□□ 1.56
Prpf40aQ9R1C7 Nnat-208ENSMUST00000173595 927 ntTSL 2 BASIC24.81■■□□□ 1.56
Prpf40aQ9R1C7 Gm40983-202ENSMUST00000222598 1198 ntTSL 5 BASIC24.81■■□□□ 1.56
Prpf40aQ9R1C7 Zcrb1-201ENSMUST00000076070 877 ntAPPRIS P3 TSL 1 (best) BASIC24.81■■□□□ 1.56
Prpf40aQ9R1C7 Prr5-201ENSMUST00000065499 1830 ntAPPRIS P3 TSL 1 (best) BASIC24.8■■□□□ 1.56
Prpf40aQ9R1C7 Rp9-201ENSMUST00000034763 1134 ntAPPRIS P2 TSL 1 (best) BASIC24.8■■□□□ 1.56
Prpf40aQ9R1C7 Kdf1-202ENSMUST00000105901 1699 ntAPPRIS P2 TSL 1 (best) BASIC24.8■■□□□ 1.56
Prpf40aQ9R1C7 Dnpep-201ENSMUST00000066668 2488 ntAPPRIS P3 TSL 1 (best) BASIC24.79■■□□□ 1.56
Prpf40aQ9R1C7 Tmbim4-204ENSMUST00000134797 486 ntTSL 1 (best) BASIC24.79■■□□□ 1.56
Prpf40aQ9R1C7 Chtf8-205ENSMUST00000176515 694 ntTSL 2 BASIC24.79■■□□□ 1.56
Prpf40aQ9R1C7 AC154454.1-201ENSMUST00000225253 216 ntBASIC24.79■■□□□ 1.56
Prpf40aQ9R1C7 Kif1c-205ENSMUST00000152618 1943 ntTSL 1 (best) BASIC24.78■■□□□ 1.56
Prpf40aQ9R1C7 Gm5987-201ENSMUST00000196433 1151 ntBASIC24.78■■□□□ 1.56
Prpf40aQ9R1C7 Wwc1-201ENSMUST00000018993 4531 ntAPPRIS P1 TSL 1 (best) BASIC24.78■■□□□ 1.56
Prpf40aQ9R1C7 E130309D02Rik-201ENSMUST00000046418 2208 ntAPPRIS P1 TSL 1 (best) BASIC24.77■■□□□ 1.56
Prpf40aQ9R1C7 Plpp2-204ENSMUST00000166804 1566 ntAPPRIS ALT2 TSL 1 (best) BASIC24.77■■□□□ 1.56
Prpf40aQ9R1C7 Mir3960-201ENSMUST00000198213 73 ntBASIC24.77■■□□□ 1.56
Prpf40aQ9R1C7 Olfm1-201ENSMUST00000028177 2757 ntAPPRIS P1 TSL 1 (best) BASIC24.77■■□□□ 1.56
Prpf40aQ9R1C7 Cnep1r1-201ENSMUST00000095214 1731 ntAPPRIS P1 TSL 1 (best) BASIC24.77■■□□□ 1.56
Prpf40aQ9R1C7 Cdc42bpb-201ENSMUST00000041965 6714 ntAPPRIS P1 TSL 1 (best) BASIC24.77■■□□□ 1.56
Prpf40aQ9R1C7 Il17rd-202ENSMUST00000223942 2186 ntBASIC24.77■■□□□ 1.56
Prpf40aQ9R1C7 Ccnyl1-203ENSMUST00000187170 1506 ntAPPRIS P1 TSL 5 BASIC24.76■■□□□ 1.55
Prpf40aQ9R1C7 Mrps15-201ENSMUST00000030675 937 ntAPPRIS P1 TSL 1 (best) BASIC24.76■■□□□ 1.55
Prpf40aQ9R1C7 Azin2-202ENSMUST00000106068 2049 ntAPPRIS P1 TSL 5 BASIC24.76■■□□□ 1.55
Prpf40aQ9R1C7 Cic-202ENSMUST00000163320 6096 ntTSL 1 (best) BASIC24.75■■□□□ 1.55
Prpf40aQ9R1C7 Cic-201ENSMUST00000005578 6099 ntTSL 5 BASIC24.75■■□□□ 1.55
Prpf40aQ9R1C7 Ccsap-202ENSMUST00000122421 2673 ntAPPRIS P1 TSL 1 (best) BASIC24.75■■□□□ 1.55
Prpf40aQ9R1C7 Slc16a11-211ENSMUST00000171032 1754 ntAPPRIS P1 TSL 5 BASIC24.75■■□□□ 1.55
Prpf40aQ9R1C7 A230020J21Rik-202ENSMUST00000192407 1649 ntTSL 2 BASIC24.74■■□□□ 1.55
Prpf40aQ9R1C7 Plvap-201ENSMUST00000048452 1987 ntAPPRIS P1 TSL 1 (best) BASIC24.74■■□□□ 1.55
Prpf40aQ9R1C7 Onecut3-201ENSMUST00000051773 4776 ntAPPRIS P1 TSL 1 (best) BASIC24.74■■□□□ 1.55
Prpf40aQ9R1C7 Phlpp1-201ENSMUST00000061047 6226 ntAPPRIS P1 TSL 1 (best) BASIC24.74■■□□□ 1.55
Prpf40aQ9R1C7 Tbr1-202ENSMUST00000102737 1406 ntTSL 2 BASIC24.73■■□□□ 1.55
Prpf40aQ9R1C7 Lor-201ENSMUST00000058150 1779 ntAPPRIS P1 TSL 1 (best) BASIC24.72■■□□□ 1.55
Prpf40aQ9R1C7 Sh3gl3-201ENSMUST00000032874 1647 ntAPPRIS P1 TSL 1 (best) BASIC24.72■■□□□ 1.55
Prpf40aQ9R1C7 Ccdc177-201ENSMUST00000073251 5775 ntAPPRIS P1 TSL 1 (best) BASIC24.72■■□□□ 1.55
Prpf40aQ9R1C7 Dbp-204ENSMUST00000211513 1156 ntTSL 5 BASIC24.72■■□□□ 1.55
Prpf40aQ9R1C7 Mad2l2-202ENSMUST00000084129 1162 ntAPPRIS P1 TSL 1 (best) BASIC24.72■■□□□ 1.55
Prpf40aQ9R1C7 Gm10499-202ENSMUST00000174778 1698 ntTSL 1 (best) BASIC24.72■■□□□ 1.55
Prpf40aQ9R1C7 Ppp4c-201ENSMUST00000032936 1359 ntAPPRIS P1 TSL 1 (best) BASIC24.71■■□□□ 1.55
Prpf40aQ9R1C7 Smarcc1-201ENSMUST00000088716 5717 ntAPPRIS P2 TSL 1 (best) BASIC24.71■■□□□ 1.55
Prpf40aQ9R1C7 Usp12-201ENSMUST00000085614 4327 ntAPPRIS P1 TSL 1 (best) BASIC24.7■■□□□ 1.55
Prpf40aQ9R1C7 Lgi2-201ENSMUST00000039750 6456 ntAPPRIS P3 TSL 1 (best) BASIC24.7■■□□□ 1.55
Prpf40aQ9R1C7 Dnajc21-201ENSMUST00000136591 2060 ntAPPRIS P1 TSL 5 BASIC24.7■■□□□ 1.54
Prpf40aQ9R1C7 Bag2-201ENSMUST00000044691 1860 ntAPPRIS P1 TSL 1 (best) BASIC24.7■■□□□ 1.54
Prpf40aQ9R1C7 Rpl31-203ENSMUST00000179954 630 ntAPPRIS P1 TSL 1 (best) BASIC24.69■■□□□ 1.54
Prpf40aQ9R1C7 Cadm1-202ENSMUST00000085909 2126 ntTSL 1 (best) BASIC24.69■■□□□ 1.54
Prpf40aQ9R1C7 Gm12818-201ENSMUST00000117562 1349 ntBASIC24.68■■□□□ 1.54
Prpf40aQ9R1C7 Fam204a-201ENSMUST00000065286 2035 ntAPPRIS P1 TSL 1 (best) BASIC24.68■■□□□ 1.54
Prpf40aQ9R1C7 Kcnc3-202ENSMUST00000107907 5281 ntAPPRIS P2 TSL 5 BASIC24.68■■□□□ 1.54
Prpf40aQ9R1C7 Tmem70-203ENSMUST00000177501 1636 ntAPPRIS P3 TSL 1 (best) BASIC24.68■■□□□ 1.54
Prpf40aQ9R1C7 Rundc3b-202ENSMUST00000115378 1891 ntAPPRIS ALT2 TSL 5 BASIC24.67■■□□□ 1.54
Prpf40aQ9R1C7 Gm9812-201ENSMUST00000061934 968 ntBASIC24.67■■□□□ 1.54
Prpf40aQ9R1C7 Gm6311-201ENSMUST00000073790 878 ntBASIC24.67■■□□□ 1.54
Prpf40aQ9R1C7 Tmem260-210ENSMUST00000227440 2222 ntAPPRIS ALT2 BASIC24.67■■□□□ 1.54
Prpf40aQ9R1C7 A330041J22Rik-201ENSMUST00000150367 1825 ntTSL 1 (best) BASIC24.67■■□□□ 1.54
Prpf40aQ9R1C7 Osbpl10-207ENSMUST00000183104 2477 ntAPPRIS P1 TSL 5 BASIC24.67■■□□□ 1.54
Prpf40aQ9R1C7 Tgfbrap1-202ENSMUST00000186694 5385 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.54
Prpf40aQ9R1C7 Glrx3-201ENSMUST00000064404 1685 ntAPPRIS P2 TSL 1 (best) BASIC24.66■■□□□ 1.54
Prpf40aQ9R1C7 Ctage5-218ENSMUST00000177162 2728 ntTSL 5 BASIC24.66■■□□□ 1.54
Prpf40aQ9R1C7 Dyrk2-201ENSMUST00000004281 6129 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
Prpf40aQ9R1C7 Efhd1os-201ENSMUST00000138844 332 ntTSL 3 BASIC24.66■■□□□ 1.54
Prpf40aQ9R1C7 Gm45364-201ENSMUST00000210883 159 ntBASIC24.66■■□□□ 1.54
Prpf40aQ9R1C7 1110008P14Rik-201ENSMUST00000048792 680 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
Prpf40aQ9R1C7 Rab26-202ENSMUST00000061764 1291 ntTSL 2 BASIC24.66■■□□□ 1.54
Prpf40aQ9R1C7 Ip6k1-208ENSMUST00000176854 2251 ntTSL 1 (best) BASIC24.66■■□□□ 1.54
Prpf40aQ9R1C7 Gm26533-201ENSMUST00000180550 1790 ntTSL 1 (best) BASIC24.65■■□□□ 1.54
Prpf40aQ9R1C7 Shb-201ENSMUST00000061986 2244 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
Prpf40aQ9R1C7 Hdac1-201ENSMUST00000102597 2038 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
Prpf40aQ9R1C7 Rasgef1c-203ENSMUST00000093142 2216 ntAPPRIS P3 TSL 1 (best) BASIC24.65■■□□□ 1.54
Prpf40aQ9R1C7 Coro1b-201ENSMUST00000008893 1888 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.54
Prpf40aQ9R1C7 E130218I03Rik-204ENSMUST00000131447 888 ntAPPRIS P1 TSL 5 BASIC24.64■■□□□ 1.54
Prpf40aQ9R1C7 Srarp-201ENSMUST00000094544 905 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.54
Prpf40aQ9R1C7 D130020L05Rik-201ENSMUST00000180800 2431 ntTSL 1 (best) BASIC24.64■■□□□ 1.53
Prpf40aQ9R1C7 Phf2-201ENSMUST00000035540 5494 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
Prpf40aQ9R1C7 Znrf1-207ENSMUST00000173506 1238 ntAPPRIS P1 TSL 2 BASIC24.63■■□□□ 1.53
Prpf40aQ9R1C7 Acvr2b-201ENSMUST00000035093 1729 ntTSL 5 BASIC24.63■■□□□ 1.53
Prpf40aQ9R1C7 Ube2g2-204ENSMUST00000174510 2031 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
Prpf40aQ9R1C7 Hgh1-201ENSMUST00000023213 1959 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
Prpf40aQ9R1C7 Pkd1-207ENSMUST00000228550 1050 ntBASIC24.62■■□□□ 1.53
Prpf40aQ9R1C7 Gm16764-201ENSMUST00000138891 541 ntTSL 5 BASIC24.61■■□□□ 1.53
Retrieved 100 of 76,532 protein–RNA pairs in 48.8 ms