Protein–RNA interactions for Protein: Q9H3S1

SEMA4A, Semaphorin-4A, humanhuman

Predictions only

Length 761 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA4AQ9H3S1 HSD17B12-202ENST00000395700 994 ntTSL 1 (best) BASIC26.37■■□□□ 1.81
SEMA4AQ9H3S1 MANF-204ENST00000528157 1153 ntAPPRIS P1 TSL 1 (best) BASIC26.37■■□□□ 1.81
SEMA4AQ9H3S1 ZDHHC16-201ENST00000345745 1519 ntTSL 1 (best) BASIC26.37■■□□□ 1.81
SEMA4AQ9H3S1 C11orf80-218ENST00000540737 1786 ntAPPRIS ALT2 TSL 2 BASIC26.37■■□□□ 1.81
SEMA4AQ9H3S1 CACNG7-203ENST00000391767 2688 ntAPPRIS P1 TSL 5 BASIC26.36■■□□□ 1.81
SEMA4AQ9H3S1 MXRA7-203ENST00000449428 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC26.36■■□□□ 1.81
SEMA4AQ9H3S1 AL590677.1-201ENST00000438431 380 ntTSL 5 BASIC26.35■■□□□ 1.81
SEMA4AQ9H3S1 QDPR-208ENST00000513615 1188 ntTSL 2 BASIC26.35■■□□□ 1.81
SEMA4AQ9H3S1 ATP6V1E2-204ENST00000522587 1559 ntAPPRIS P1 TSL 3 BASIC26.35■■□□□ 1.81
SEMA4AQ9H3S1 PIK3R2-208ENST00000617642 1446 ntTSL 5 BASIC26.35■■□□□ 1.81
SEMA4AQ9H3S1 TNFRSF25-204ENST00000356876 1625 ntAPPRIS ALT2 TSL 1 (best) BASIC26.35■■□□□ 1.81
SEMA4AQ9H3S1 DNPEP-201ENST00000273075 2425 ntAPPRIS P3 TSL 1 (best) BASIC26.35■■□□□ 1.81
SEMA4AQ9H3S1 PXMP2-201ENST00000317479 957 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
SEMA4AQ9H3S1 PLBD2-202ENST00000545182 2321 ntTSL 2 BASIC26.34■■□□□ 1.81
SEMA4AQ9H3S1 SHOX2-201ENST00000389589 2072 ntAPPRIS P3 TSL 1 (best) BASIC26.34■■□□□ 1.81
SEMA4AQ9H3S1 BTBD19-203ENST00000450269 1572 ntAPPRIS P1 TSL 5 BASIC26.33■■□□□ 1.81
SEMA4AQ9H3S1 SPTSSA-201ENST00000298130 2777 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
SEMA4AQ9H3S1 PXMP2-205ENST00000543589 632 ntTSL 3 BASIC26.33■■□□□ 1.81
SEMA4AQ9H3S1 AC138207.2-201ENST00000583377 492 ntTSL 2 BASIC26.33■■□□□ 1.81
SEMA4AQ9H3S1 REXO4-201ENST00000371935 1899 ntTSL 3 BASIC26.33■■□□□ 1.81
SEMA4AQ9H3S1 PROC-203ENST00000409048 1586 ntTSL 5 BASIC26.33■■□□□ 1.8
SEMA4AQ9H3S1 TLE6-201ENST00000246112 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC26.32■■□□□ 1.8
SEMA4AQ9H3S1 SURF1-201ENST00000371974 1093 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
SEMA4AQ9H3S1 SURF1-205ENST00000615505 991 ntTSL 1 (best) BASIC26.32■■□□□ 1.8
SEMA4AQ9H3S1 OTUD5-202ENST00000376488 2692 ntAPPRIS ALT1 TSL 1 (best) BASIC26.32■■□□□ 1.8
SEMA4AQ9H3S1 HDHD5-202ENST00000336737 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC26.32■■□□□ 1.8
SEMA4AQ9H3S1 FHL2-202ENST00000344213 1769 ntTSL 1 (best) BASIC26.32■■□□□ 1.8
SEMA4AQ9H3S1 KIAA2013-201ENST00000376572 2815 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
SEMA4AQ9H3S1 MAZ-208ENST00000563402 1461 ntTSL 5 BASIC26.31■■□□□ 1.8
SEMA4AQ9H3S1 MAZ-210ENST00000566906 1455 ntTSL 5 BASIC26.31■■□□□ 1.8
SEMA4AQ9H3S1 SLC9A3R2-201ENST00000424542 2194 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
SEMA4AQ9H3S1 SLC35A1-203ENST00000369557 1653 ntTSL 2 BASIC26.31■■□□□ 1.8
SEMA4AQ9H3S1 MPP6-203ENST00000409761 1703 ntTSL 5 BASIC26.31■■□□□ 1.8
SEMA4AQ9H3S1 DERA-201ENST00000428559 1705 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
SEMA4AQ9H3S1 ANKRD16-201ENST00000191063 1567 ntTSL 3 BASIC26.3■■□□□ 1.8
SEMA4AQ9H3S1 BTBD7-201ENST00000298896 2621 ntTSL 1 (best) BASIC26.3■■□□□ 1.8
SEMA4AQ9H3S1 PHF20L1-207ENST00000395379 1998 ntTSL 5 BASIC26.3■■□□□ 1.8
SEMA4AQ9H3S1 GRK6-206ENST00000507633 1660 ntTSL 5 BASIC26.3■■□□□ 1.8
SEMA4AQ9H3S1 ANKRD65-205ENST00000537107 2190 ntAPPRIS P1 TSL 5 BASIC26.29■■□□□ 1.8
SEMA4AQ9H3S1 TNFRSF4-201ENST00000379236 1068 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
SEMA4AQ9H3S1 LINC01770-201ENST00000417917 634 ntTSL 2 BASIC26.29■■□□□ 1.8
SEMA4AQ9H3S1 RNF19B-201ENST00000235150 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC26.29■■□□□ 1.8
SEMA4AQ9H3S1 CPTP-201ENST00000343938 2190 ntAPPRIS P1 TSL 2 BASIC26.29■■□□□ 1.8
SEMA4AQ9H3S1 HOMER3-207ENST00000594794 903 ntTSL 5 BASIC26.28■■□□□ 1.8
SEMA4AQ9H3S1 AP004833.2-201ENST00000532228 1454 ntBASIC26.28■■□□□ 1.8
SEMA4AQ9H3S1 SOX1-201ENST00000330949 2842 ntAPPRIS P1 BASIC26.28■■□□□ 1.8
SEMA4AQ9H3S1 TSPY13P-201ENST00000338964 914 ntBASIC26.27■■□□□ 1.8
SEMA4AQ9H3S1 TRIM52-AS1-202ENST00000507434 672 ntTSL 1 (best) BASIC26.27■■□□□ 1.8
SEMA4AQ9H3S1 NPW-202ENST00000566435 991 ntAPPRIS ALT2 TSL 1 (best) BASIC26.27■■□□□ 1.8
SEMA4AQ9H3S1 C1orf232-201ENST00000634842 643 ntAPPRIS P5 TSL 5 BASIC26.27■■□□□ 1.8
SEMA4AQ9H3S1 KIF13A-207ENST00000502704 1330 ntTSL 1 (best) BASIC26.27■■□□□ 1.8
SEMA4AQ9H3S1 ENKD1-201ENST00000243878 1579 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
SEMA4AQ9H3S1 NOXA1-201ENST00000341349 1678 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
SEMA4AQ9H3S1 RALY-201ENST00000246194 1789 ntAPPRIS P4 TSL 1 (best) BASIC26.26■■□□□ 1.79
SEMA4AQ9H3S1 SHF-208ENST00000560734 1731 ntTSL 3 BASIC26.26■■□□□ 1.79
SEMA4AQ9H3S1 CHPT1-201ENST00000229266 1585 ntAPPRIS P2 TSL 1 (best) BASIC26.26■■□□□ 1.79
SEMA4AQ9H3S1 LINC01918-201ENST00000436841 797 ntTSL 2 BASIC26.26■■□□□ 1.79
SEMA4AQ9H3S1 TOMM40-201ENST00000252487 1707 ntAPPRIS P2 TSL 1 (best) BASIC26.25■■□□□ 1.79
SEMA4AQ9H3S1 TOMM40-202ENST00000405636 1709 ntAPPRIS P2 TSL 1 (best) BASIC26.25■■□□□ 1.79
SEMA4AQ9H3S1 PIK3R2-207ENST00000617130 2187 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
SEMA4AQ9H3S1 RPARP-AS1-205ENST00000596045 431 ntTSL 3 BASIC26.25■■□□□ 1.79
SEMA4AQ9H3S1 LINC02323-201ENST00000559946 1603 ntTSL 3 BASIC26.25■■□□□ 1.79
SEMA4AQ9H3S1 FAH-213ENST00000561421 1549 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
SEMA4AQ9H3S1 TANGO2-214ENST00000447208 2086 ntTSL 3 BASIC26.24■■□□□ 1.79
SEMA4AQ9H3S1 PRELID2-207ENST00000511435 1894 ntAPPRIS ALT1 TSL 2 BASIC26.24■■□□□ 1.79
SEMA4AQ9H3S1 TAF10-201ENST00000299424 1215 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
SEMA4AQ9H3S1 C16orf74-204ENST00000602719 1002 ntAPPRIS ALT2 TSL 3 BASIC26.24■■□□□ 1.79
SEMA4AQ9H3S1 CCDC160-202ENST00000517294 1790 ntAPPRIS P1 TSL 5 BASIC26.24■■□□□ 1.79
SEMA4AQ9H3S1 MYLIP-202ENST00000356840 1666 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
SEMA4AQ9H3S1 DACT2-202ENST00000366796 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC26.24■■□□□ 1.79
SEMA4AQ9H3S1 MORF4L1-203ENST00000426013 1880 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
SEMA4AQ9H3S1 TAZ-213ENST00000601016 1889 ntTSL 1 (best) BASIC26.23■■□□□ 1.79
SEMA4AQ9H3S1 CLK2-203ENST00000368361 2166 ntAPPRIS ALT1 TSL 1 (best) BASIC26.23■■□□□ 1.79
SEMA4AQ9H3S1 ABHD17C-202ENST00000558464 1976 ntTSL 1 (best) BASIC26.23■■□□□ 1.79
SEMA4AQ9H3S1 AC135731.1-201ENST00000569415 2548 ntBASIC26.22■■□□□ 1.79
SEMA4AQ9H3S1 MDFIC-203ENST00000423503 474 ntTSL 1 (best) BASIC26.22■■□□□ 1.79
SEMA4AQ9H3S1 LYSMD2-202ENST00000454181 1228 ntTSL 1 (best) BASIC26.22■■□□□ 1.79
SEMA4AQ9H3S1 U85056.1-201ENST00000616429 682 ntBASIC26.22■■□□□ 1.79
SEMA4AQ9H3S1 RTN2-202ENST00000344680 2063 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
SEMA4AQ9H3S1 RPUSD1-207ENST00000565809 1918 ntTSL 2 BASIC26.22■■□□□ 1.79
SEMA4AQ9H3S1 DEDD-212ENST00000545495 2329 ntAPPRIS P1 TSL 3 BASIC26.21■■□□□ 1.79
SEMA4AQ9H3S1 HYI-213ENST00000583037 1322 ntTSL 5 BASIC26.21■■□□□ 1.79
SEMA4AQ9H3S1 RARRES2P1-201ENST00000474487 481 ntBASIC26.21■■□□□ 1.79
SEMA4AQ9H3S1 TMEM114-202ENST00000568335 899 ntTSL 3 BASIC26.21■■□□□ 1.79
SEMA4AQ9H3S1 LINC01896-206ENST00000575722 1256 ntTSL 2 BASIC26.21■■□□□ 1.79
SEMA4AQ9H3S1 SLC16A11-201ENST00000308009 1803 ntAPPRIS P2 TSL 1 (best) BASIC26.21■■□□□ 1.79
SEMA4AQ9H3S1 LINC01003-201ENST00000564834 1764 ntBASIC26.2■■□□□ 1.79
SEMA4AQ9H3S1 NKPD1-202ENST00000589776 1950 ntAPPRIS P1 BASIC26.2■■□□□ 1.79
SEMA4AQ9H3S1 ABL2-203ENST00000392043 2140 ntTSL 1 (best) BASIC26.2■■□□□ 1.79
SEMA4AQ9H3S1 TRADD-201ENST00000345057 1877 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.78
SEMA4AQ9H3S1 C20orf24-203ENST00000373852 1059 ntTSL 1 (best) BASIC26.2■■□□□ 1.78
SEMA4AQ9H3S1 HNRNPAB-204ENST00000504898 1785 ntAPPRIS P4 TSL 1 (best) BASIC26.2■■□□□ 1.78
SEMA4AQ9H3S1 AC019069.1-201ENST00000610008 1333 ntBASIC26.19■■□□□ 1.78
SEMA4AQ9H3S1 REXO4-202ENST00000371942 2360 ntAPPRIS P1 TSL 1 (best) BASIC26.19■■□□□ 1.78
SEMA4AQ9H3S1 AKAP17A-202ENST00000381261 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC26.19■■□□□ 1.78
SEMA4AQ9H3S1 MZT2B-201ENST00000281871 933 ntAPPRIS P3 TSL 1 (best) BASIC26.19■■□□□ 1.78
SEMA4AQ9H3S1 MZT2A-201ENST00000309451 624 ntAPPRIS P1 TSL 1 (best) BASIC26.19■■□□□ 1.78
SEMA4AQ9H3S1 BOK-AS1-201ENST00000434306 643 ntTSL 1 (best) BASIC26.19■■□□□ 1.78
SEMA4AQ9H3S1 GFER-205ENST00000569451 517 ntTSL 5 BASIC26.19■■□□□ 1.78
SEMA4AQ9H3S1 ACAA1-220ENST00000627515 1862 ntTSL 5 BASIC26.19■■□□□ 1.78
Retrieved 100 of 98,524 protein–RNA pairs in 42.6 ms