Protein–RNA interactions for Protein: Q9DC48

Cdc40, Pre-mRNA-processing factor 17, mousemouse

Known RBP Predictions only

Length 579 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdc40Q9DC48 Mapkap1-202ENSMUST00000113124 1758 ntAPPRIS ALT1 TSL 5 BASIC20.95■□□□□ 0.94
Cdc40Q9DC48 Fam92a-202ENSMUST00000108285 1639 ntAPPRIS P3 TSL 5 BASIC20.95■□□□□ 0.94
Cdc40Q9DC48 Snta1-202ENSMUST00000109728 2131 ntAPPRIS P2 TSL 1 (best) BASIC20.95■□□□□ 0.94
Cdc40Q9DC48 Hdac2-201ENSMUST00000019911 2005 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Cdc40Q9DC48 Arhgap9-203ENSMUST00000219026 1946 ntAPPRIS P2 TSL 1 (best) BASIC20.94■□□□□ 0.94
Cdc40Q9DC48 Suds3-201ENSMUST00000086471 2425 ntAPPRIS P3 TSL 1 (best) BASIC20.93■□□□□ 0.94
Cdc40Q9DC48 Eif4e2-204ENSMUST00000113231 1119 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
Cdc40Q9DC48 Rnaseh2c-201ENSMUST00000025864 1126 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Cdc40Q9DC48 Crlf2-201ENSMUST00000044579 1323 ntAPPRIS P3 TSL 1 (best) BASIC20.93■□□□□ 0.94
Cdc40Q9DC48 Gal3st1-202ENSMUST00000078757 1749 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Cdc40Q9DC48 Csrp1-201ENSMUST00000027677 1823 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Cdc40Q9DC48 Csrp1-202ENSMUST00000097561 1828 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Cdc40Q9DC48 Eva1b-202ENSMUST00000106150 1144 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Cdc40Q9DC48 Gm44957-202ENSMUST00000205137 448 ntTSL 3 BASIC20.92■□□□□ 0.94
Cdc40Q9DC48 Usp48-205ENSMUST00000105840 5741 ntAPPRIS P1 TSL 5 BASIC20.92■□□□□ 0.94
Cdc40Q9DC48 Efna2-201ENSMUST00000003154 2131 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Cdc40Q9DC48 2810002D19Rik-201ENSMUST00000152313 2040 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
Cdc40Q9DC48 Gm45364-201ENSMUST00000210883 159 ntBASIC20.91■□□□□ 0.94
Cdc40Q9DC48 AC125444.1-201ENSMUST00000223536 639 ntAPPRIS P1 BASIC20.91■□□□□ 0.94
Cdc40Q9DC48 Hook1-201ENSMUST00000030306 5517 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Cdc40Q9DC48 Rarres1-201ENSMUST00000054825 1325 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Cdc40Q9DC48 Tmpo-203ENSMUST00000092219 1854 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
Cdc40Q9DC48 Neurl4-201ENSMUST00000061837 5188 ntAPPRIS P3 TSL 5 BASIC20.91■□□□□ 0.94
Cdc40Q9DC48 Cln6-201ENSMUST00000034776 2142 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Cdc40Q9DC48 Phf23-201ENSMUST00000018716 2006 ntAPPRIS P3 TSL 1 (best) BASIC20.9■□□□□ 0.94
Cdc40Q9DC48 Gm15918-201ENSMUST00000137259 689 ntTSL 3 BASIC20.9■□□□□ 0.94
Cdc40Q9DC48 Gm9888-201ENSMUST00000150678 965 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
Cdc40Q9DC48 Mpped1-208ENSMUST00000163723 1064 ntTSL 5 BASIC20.9■□□□□ 0.94
Cdc40Q9DC48 Ildr2-206ENSMUST00000194964 2467 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
Cdc40Q9DC48 Hdac3-201ENSMUST00000043498 2004 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Cdc40Q9DC48 Fam149b-203ENSMUST00000090499 2370 ntAPPRIS P4 TSL 1 (best) BASIC20.89■□□□□ 0.94
Cdc40Q9DC48 Pdcd4-203ENSMUST00000165617 1806 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Cdc40Q9DC48 Gm20512-201ENSMUST00000172483 618 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
Cdc40Q9DC48 Gmeb1-202ENSMUST00000105964 1925 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Cdc40Q9DC48 Gm8098-201ENSMUST00000146985 1499 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
Cdc40Q9DC48 Sdccag3-202ENSMUST00000077983 1955 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
Cdc40Q9DC48 Mprip-202ENSMUST00000072031 8718 ntAPPRIS P4 TSL 1 (best) BASIC20.87■□□□□ 0.93
Cdc40Q9DC48 Qk-201ENSMUST00000042296 6718 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
Cdc40Q9DC48 2510046G10Rik-202ENSMUST00000187458 1052 ntBASIC20.87■□□□□ 0.93
Cdc40Q9DC48 Eya2-202ENSMUST00000088132 2447 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Cdc40Q9DC48 Arl8a-201ENSMUST00000027684 1713 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Cdc40Q9DC48 Fam174a-201ENSMUST00000059975 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Cdc40Q9DC48 Gm40983-202ENSMUST00000222598 1198 ntTSL 5 BASIC20.86■□□□□ 0.93
Cdc40Q9DC48 Nt5c3-201ENSMUST00000031793 1676 ntAPPRIS P3 TSL 1 (best) BASIC20.86■□□□□ 0.93
Cdc40Q9DC48 Efna3-201ENSMUST00000029673 2363 ntAPPRIS P2 TSL 1 (best) BASIC20.86■□□□□ 0.93
Cdc40Q9DC48 Tsen34-204ENSMUST00000108630 1779 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
Cdc40Q9DC48 Gli3-204ENSMUST00000141194 466 ntTSL 2 BASIC20.85■□□□□ 0.93
Cdc40Q9DC48 Gm43573-201ENSMUST00000196445 570 ntTSL 5 BASIC20.85■□□□□ 0.93
Cdc40Q9DC48 Ndufs3-201ENSMUST00000005647 1046 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Cdc40Q9DC48 Dcbld2-201ENSMUST00000046663 6561 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Cdc40Q9DC48 B230322F03Rik-201ENSMUST00000181932 1569 ntBASIC20.85■□□□□ 0.93
Cdc40Q9DC48 Gm13889-201ENSMUST00000099689 1386 ntBASIC20.85■□□□□ 0.93
Cdc40Q9DC48 Prr3-201ENSMUST00000055454 2727 ntAPPRIS P3 TSL 1 (best) BASIC20.84■□□□□ 0.93
Cdc40Q9DC48 Epop-201ENSMUST00000052281 2314 ntAPPRIS P1 BASIC20.84■□□□□ 0.93
Cdc40Q9DC48 Gipc1-201ENSMUST00000019577 1522 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Cdc40Q9DC48 Slc30a2-203ENSMUST00000105873 1224 ntTSL 5 BASIC20.84■□□□□ 0.93
Cdc40Q9DC48 Trappc6b-201ENSMUST00000021380 1255 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Cdc40Q9DC48 Dyrk2-201ENSMUST00000004281 6129 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Cdc40Q9DC48 Tceal6-201ENSMUST00000033783 1114 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
Cdc40Q9DC48 Arpc2-203ENSMUST00000113820 1439 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
Cdc40Q9DC48 2510039O18Rik-201ENSMUST00000103232 2731 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
Cdc40Q9DC48 Map2k7-201ENSMUST00000003027 1626 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
Cdc40Q9DC48 Gm4419-202ENSMUST00000226239 1431 ntBASIC20.82■□□□□ 0.92
Cdc40Q9DC48 Pura-201ENSMUST00000051301 3145 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Cdc40Q9DC48 Pde6d-201ENSMUST00000027444 1159 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Cdc40Q9DC48 Tead1-203ENSMUST00000084705 2543 ntAPPRIS ALT1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Cdc40Q9DC48 Arx-202ENSMUST00000113947 2454 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Cdc40Q9DC48 Kif1c-205ENSMUST00000152618 1943 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
Cdc40Q9DC48 Azin2-202ENSMUST00000106068 2049 ntAPPRIS P1 TSL 5 BASIC20.82■□□□□ 0.92
Cdc40Q9DC48 Cnep1r1-201ENSMUST00000095214 1731 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Cdc40Q9DC48 Fam212b-202ENSMUST00000098273 1868 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
Cdc40Q9DC48 Dennd5a-201ENSMUST00000080437 5004 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Cdc40Q9DC48 Tspan33-202ENSMUST00000115250 1977 ntAPPRIS ALT1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Cdc40Q9DC48 Kcnip2-208ENSMUST00000161886 693 ntAPPRIS P3 TSL 1 (best) BASIC20.8■□□□□ 0.92
Cdc40Q9DC48 1700020L24Rik-201ENSMUST00000037378 949 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Cdc40Q9DC48 Klhl15-202ENSMUST00000113908 1235 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
Cdc40Q9DC48 Gm45051-201ENSMUST00000206838 963 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
Cdc40Q9DC48 Lor-201ENSMUST00000058150 1779 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Cdc40Q9DC48 Gm12818-201ENSMUST00000117562 1349 ntBASIC20.78■□□□□ 0.92
Cdc40Q9DC48 Nkx2-4-201ENSMUST00000067020 1725 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Cdc40Q9DC48 Fam181b-201ENSMUST00000051179 2003 ntAPPRIS P1 BASIC20.78■□□□□ 0.92
Cdc40Q9DC48 Rps2-ps13-201ENSMUST00000117295 882 ntBASIC20.78■□□□□ 0.92
Cdc40Q9DC48 Gm12366-201ENSMUST00000121722 873 ntBASIC20.78■□□□□ 0.92
Cdc40Q9DC48 Rps2-206ENSMUST00000146867 962 ntTSL 5 BASIC20.78■□□□□ 0.92
Cdc40Q9DC48 Rps2-ps10-201ENSMUST00000076842 879 ntBASIC20.78■□□□□ 0.92
Cdc40Q9DC48 Gm5786-201ENSMUST00000085368 882 ntBASIC20.78■□□□□ 0.92
Cdc40Q9DC48 Tbc1d25-203ENSMUST00000143984 2184 ntAPPRIS ALT2 TSL 5 BASIC20.78■□□□□ 0.92
Cdc40Q9DC48 Hmox2-202ENSMUST00000118885 1392 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Cdc40Q9DC48 Pan3-201ENSMUST00000031651 5048 ntAPPRIS P2 TSL 5 BASIC20.77■□□□□ 0.92
Cdc40Q9DC48 Nnat-208ENSMUST00000173595 927 ntTSL 2 BASIC20.77■□□□□ 0.92
Cdc40Q9DC48 Gm38287-201ENSMUST00000195193 2051 ntTSL 3 BASIC20.77■□□□□ 0.92
Cdc40Q9DC48 Prph-202ENSMUST00000047104 1865 ntAPPRIS P3 TSL 1 (best) BASIC20.77■□□□□ 0.92
Cdc40Q9DC48 Zdhhc2-205ENSMUST00000167766 1759 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
Cdc40Q9DC48 Gm16049-201ENSMUST00000155166 616 ntTSL 3 BASIC20.76■□□□□ 0.91
Cdc40Q9DC48 Gm27502-201ENSMUST00000183495 199 ntBASIC20.76■□□□□ 0.91
Cdc40Q9DC48 Atp5j-201ENSMUST00000023608 809 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Cdc40Q9DC48 Mrpl23-201ENSMUST00000038675 692 ntAPPRIS P2 TSL 1 (best) BASIC20.76■□□□□ 0.91
Cdc40Q9DC48 Gm10499-202ENSMUST00000174778 1698 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
Cdc40Q9DC48 Glrx3-201ENSMUST00000064404 1685 ntAPPRIS P2 TSL 1 (best) BASIC20.76■□□□□ 0.91
Cdc40Q9DC48 Gm15688-201ENSMUST00000161394 2418 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
Retrieved 100 of 76,532 protein–RNA pairs in 10.6 ms