Protein–RNA interactions for Protein: Q9BXS0

COL25A1, Collagen alpha-1(XXV) chain, humanhuman

Predicted RBP Predictions only

Length 654 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL25A1Q9BXS0 ALKAL2-204ENST00000403610 1389 ntAPPRIS P1 TSL 1 (best) BASIC26.38■■□□□ 1.81
COL25A1Q9BXS0 RNASET2-210ENST00000508775 1375 ntAPPRIS P1 TSL 1 (best) BASIC26.38■■□□□ 1.81
COL25A1Q9BXS0 MRPS34-202ENST00000397375 1024 ntAPPRIS P1 TSL 1 (best) BASIC26.38■■□□□ 1.81
COL25A1Q9BXS0 CTDNEP1-208ENST00000573600 1724 ntAPPRIS P1 TSL 5 BASIC26.38■■□□□ 1.81
COL25A1Q9BXS0 AC110285.7-201ENST00000624417 1536 ntBASIC26.38■■□□□ 1.81
COL25A1Q9BXS0 WDR86-204ENST00000477459 1428 ntTSL 2 BASIC26.38■■□□□ 1.81
COL25A1Q9BXS0 BMP7-202ENST00000395864 1746 ntTSL 5 BASIC26.37■■□□□ 1.81
COL25A1Q9BXS0 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC26.37■■□□□ 1.81
COL25A1Q9BXS0 TGIF1-202ENST00000343820 2076 ntAPPRIS P1 TSL 1 (best) BASIC26.37■■□□□ 1.81
COL25A1Q9BXS0 MAST4-205ENST00000406039 717 ntTSL 1 (best) BASIC26.36■■□□□ 1.81
COL25A1Q9BXS0 SOCS2-202ENST00000536696 1065 ntAPPRIS P1 TSL 2 BASIC26.36■■□□□ 1.81
COL25A1Q9BXS0 AL121906.1-201ENST00000606866 440 ntTSL 3 BASIC26.36■■□□□ 1.81
COL25A1Q9BXS0 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC26.36■■□□□ 1.81
COL25A1Q9BXS0 AC120057.4-201ENST00000624722 1615 ntBASIC26.36■■□□□ 1.81
COL25A1Q9BXS0 FBRSL1-201ENST00000434748 5568 ntAPPRIS P2 TSL 1 (best) BASIC26.35■■□□□ 1.81
COL25A1Q9BXS0 TSPY4-202ENST00000426950 1179 ntAPPRIS P5 TSL 5 BASIC26.35■■□□□ 1.81
COL25A1Q9BXS0 MDFIC-206ENST00000448022 484 ntTSL 2 BASIC26.35■■□□□ 1.81
COL25A1Q9BXS0 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC26.35■■□□□ 1.81
COL25A1Q9BXS0 TUBBP5-204ENST00000635438 565 ntTSL 4 BASIC26.35■■□□□ 1.81
COL25A1Q9BXS0 HNRNPAB-204ENST00000504898 1785 ntAPPRIS P4 TSL 1 (best) BASIC26.34■■□□□ 1.81
COL25A1Q9BXS0 LONRF2P2-201ENST00000439212 571 ntBASIC26.34■■□□□ 1.81
COL25A1Q9BXS0 KRTAP5-1-201ENST00000382171 942 ntAPPRIS P1 BASIC26.33■■□□□ 1.81
COL25A1Q9BXS0 MTERF3-201ENST00000287025 1409 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
COL25A1Q9BXS0 P2RX2-202ENST00000348800 1222 ntAPPRIS ALT2 TSL 1 (best) BASIC26.32■■□□□ 1.8
COL25A1Q9BXS0 P2RX2-204ENST00000351222 1140 ntTSL 1 (best) BASIC26.32■■□□□ 1.8
COL25A1Q9BXS0 TMEM80-201ENST00000397510 1094 ntAPPRIS P2 TSL 5 BASIC26.32■■□□□ 1.8
COL25A1Q9BXS0 P2RX2-207ENST00000449132 1113 ntTSL 1 (best) BASIC26.32■■□□□ 1.8
COL25A1Q9BXS0 TK2-216ENST00000564917 1156 ntTSL 3 BASIC26.32■■□□□ 1.8
COL25A1Q9BXS0 EGFL8-220ENST00000395512 1312 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
COL25A1Q9BXS0 TMEM120A-214ENST00000493111 1456 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
COL25A1Q9BXS0 TST-201ENST00000249042 1211 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
COL25A1Q9BXS0 RPL31-208ENST00000409733 825 ntAPPRIS P3 TSL 1 (best) BASIC26.31■■□□□ 1.8
COL25A1Q9BXS0 KRT16P3-201ENST00000439127 1283 ntBASIC26.31■■□□□ 1.8
COL25A1Q9BXS0 RPL27A-206ENST00000530022 878 ntTSL 1 (best) BASIC26.31■■□□□ 1.8
COL25A1Q9BXS0 LINC01233-202ENST00000598832 568 ntTSL 2 BASIC26.31■■□□□ 1.8
COL25A1Q9BXS0 ADRA2C-201ENST00000330055 2129 ntAPPRIS P1 BASIC26.3■■□□□ 1.8
COL25A1Q9BXS0 EBPL-204ENST00000378272 766 ntTSL 3 BASIC26.3■■□□□ 1.8
COL25A1Q9BXS0 EBPL-205ENST00000378284 967 ntTSL 1 (best) BASIC26.3■■□□□ 1.8
COL25A1Q9BXS0 KLRG2-202ENST00000393039 1148 ntTSL 5 BASIC26.3■■□□□ 1.8
COL25A1Q9BXS0 UNC93B8-201ENST00000511903 705 ntBASIC26.3■■□□□ 1.8
COL25A1Q9BXS0 EDA-209ENST00000525810 843 ntTSL 1 (best) BASIC26.3■■□□□ 1.8
COL25A1Q9BXS0 TRIR-202ENST00000588213 841 ntTSL 3 BASIC26.3■■□□□ 1.8
COL25A1Q9BXS0 AC093762.1-201ENST00000641981 837 ntAPPRIS P1 BASIC26.3■■□□□ 1.8
COL25A1Q9BXS0 HOMER3-202ENST00000392351 1557 ntAPPRIS P3 TSL 1 (best) BASIC26.29■■□□□ 1.8
COL25A1Q9BXS0 AL357078.1-201ENST00000448344 310 ntTSL 4 BASIC26.29■■□□□ 1.8
COL25A1Q9BXS0 AC131281.2-201ENST00000520478 145 ntBASIC26.29■■□□□ 1.8
COL25A1Q9BXS0 MAGI2-AS3-201ENST00000414797 1072 ntTSL 2 BASIC26.28■■□□□ 1.8
COL25A1Q9BXS0 CUL4A-209ENST00000488558 1111 ntTSL 3 BASIC26.28■■□□□ 1.8
COL25A1Q9BXS0 FAM173A-207ENST00000569529 1052 ntAPPRIS P3 TSL 1 (best) BASIC26.28■■□□□ 1.8
COL25A1Q9BXS0 LINC01925-201ENST00000579492 500 ntTSL 5 BASIC26.28■■□□□ 1.8
COL25A1Q9BXS0 TMEM80-202ENST00000397512 1572 ntAPPRIS ALT2 TSL 1 (best) BASIC26.28■■□□□ 1.8
COL25A1Q9BXS0 AL136116.3-201ENST00000402907 1138 ntBASIC26.27■■□□□ 1.8
COL25A1Q9BXS0 MDK-206ENST00000407067 1026 ntAPPRIS P2 TSL 1 (best) BASIC26.27■■□□□ 1.8
COL25A1Q9BXS0 AC138647.1-201ENST00000427937 648 ntAPPRIS P1 TSL 5 BASIC26.27■■□□□ 1.8
COL25A1Q9BXS0 NKIRAS2-208ENST00000462043 585 ntTSL 4 BASIC26.27■■□□□ 1.8
COL25A1Q9BXS0 GPRC5B-202ENST00000535671 1215 ntAPPRIS ALT2 TSL 1 (best) BASIC26.27■■□□□ 1.8
COL25A1Q9BXS0 G6PC3-201ENST00000269097 1533 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
COL25A1Q9BXS0 PTGER1-201ENST00000292513 1421 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
COL25A1Q9BXS0 PARL-206ENST00000435888 1098 ntTSL 5 BASIC26.26■■□□□ 1.79
COL25A1Q9BXS0 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC26.26■■□□□ 1.79
COL25A1Q9BXS0 AGAP1-204ENST00000409457 2165 ntTSL 1 (best) BASIC26.26■■□□□ 1.79
COL25A1Q9BXS0 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC26.25■■□□□ 1.79
COL25A1Q9BXS0 CDKN2A-208ENST00000498124 880 ntTSL 1 (best) BASIC26.25■■□□□ 1.79
COL25A1Q9BXS0 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC26.25■■□□□ 1.79
COL25A1Q9BXS0 LSM7-204ENST00000587502 575 ntTSL 1 (best) BASIC26.25■■□□□ 1.79
COL25A1Q9BXS0 AC135279.3-201ENST00000610945 1311 ntBASIC26.24■■□□□ 1.79
COL25A1Q9BXS0 RAP2CP1-202ENST00000605179 643 ntBASIC26.24■■□□□ 1.79
COL25A1Q9BXS0 MIR4787-201ENST00000607364 84 ntBASIC26.24■■□□□ 1.79
COL25A1Q9BXS0 RBM42-205ENST00000589871 1487 ntTSL 5 BASIC26.23■■□□□ 1.79
COL25A1Q9BXS0 FAM159A-204ENST00000517870 748 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
COL25A1Q9BXS0 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC26.23■■□□□ 1.79
COL25A1Q9BXS0 WHAMMP2-203ENST00000563942 1603 ntBASIC26.22■■□□□ 1.79
COL25A1Q9BXS0 HES4-201ENST00000304952 899 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
COL25A1Q9BXS0 PCMT1-201ENST00000367378 1293 ntAPPRIS P3 TSL 1 (best) BASIC26.22■■□□□ 1.79
COL25A1Q9BXS0 AC096631.2-201ENST00000436136 790 ntBASIC26.22■■□□□ 1.79
COL25A1Q9BXS0 KRT125P-201ENST00000546827 989 ntBASIC26.22■■□□□ 1.79
COL25A1Q9BXS0 TMUB1-201ENST00000297533 1353 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
COL25A1Q9BXS0 AC133561.4-201ENST00000566112 224 ntBASIC26.21■■□□□ 1.79
COL25A1Q9BXS0 AC018755.3-202ENST00000596210 929 ntBASIC26.21■■□□□ 1.79
COL25A1Q9BXS0 AL445237.1-202ENST00000604581 425 ntTSL 5 BASIC26.21■■□□□ 1.79
COL25A1Q9BXS0 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC26.21■■□□□ 1.79
COL25A1Q9BXS0 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC26.21■■□□□ 1.79
COL25A1Q9BXS0 FAM107A-203ENST00000447756 1432 ntTSL 1 (best) BASIC26.21■■□□□ 1.79
COL25A1Q9BXS0 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.78
COL25A1Q9BXS0 SMUG1-203ENST00000401977 1082 ntAPPRIS P1 TSL 5 BASIC26.2■■□□□ 1.78
COL25A1Q9BXS0 MTX2-204ENST00000443241 799 ntTSL 3 BASIC26.2■■□□□ 1.78
COL25A1Q9BXS0 TMPO-AS1-201ENST00000546421 738 ntTSL 5 BASIC26.2■■□□□ 1.78
COL25A1Q9BXS0 SSX2IP-209ENST00000603677 1149 ntTSL 1 (best) BASIC26.2■■□□□ 1.78
COL25A1Q9BXS0 SLC2A4RG-201ENST00000266077 1731 ntAPPRIS P1 TSL 1 (best) BASIC26.19■■□□□ 1.78
COL25A1Q9BXS0 NPTXR-202ENST00000640136 1503 ntAPPRIS P2 TSL 1 (best) BASIC26.19■■□□□ 1.78
COL25A1Q9BXS0 TSPAN11-203ENST00000545802 1649 ntTSL 1 (best) BASIC26.19■■□□□ 1.78
COL25A1Q9BXS0 CHTF8-208ENST00000522091 863 ntTSL 2 BASIC26.19■■□□□ 1.78
COL25A1Q9BXS0 AC093536.1-201ENST00000569153 554 ntBASIC26.19■■□□□ 1.78
COL25A1Q9BXS0 EBAG9-202ENST00000395785 1467 ntAPPRIS P1 TSL 1 (best) BASIC26.17■■□□□ 1.78
COL25A1Q9BXS0 ACBD4-216ENST00000619916 1276 ntTSL 5 BASIC26.17■■□□□ 1.78
COL25A1Q9BXS0 MSRB1-206ENST00000622125 1363 ntAPPRIS ALT1 TSL 5 BASIC26.17■■□□□ 1.78
COL25A1Q9BXS0 HNRNPAB-206ENST00000506339 1747 ntAPPRIS ALT2 TSL 5 BASIC26.17■■□□□ 1.78
COL25A1Q9BXS0 RPP21-222ENST00000433076 577 ntTSL 2 BASIC26.16■■□□□ 1.78
COL25A1Q9BXS0 SPATA33-209ENST00000579310 1490 ntAPPRIS ALT2 TSL 2 BASIC26.16■■□□□ 1.78
COL25A1Q9BXS0 AC135983.2-203ENST00000454486 1613 ntBASIC26.15■■□□□ 1.78
Retrieved 100 of 98,524 protein–RNA pairs in 101.7 ms