Protein–RNA interactions for Protein: Q99715

COL12A1, Collagen alpha-1(XII) chain, humanhuman

Predictions only

Length 3,063 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1Q99715 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC22.37■■□□□ 1.17
COL12A1Q99715 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC22.37■■□□□ 1.17
COL12A1Q99715 CD63-201ENST00000257857 1070 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
COL12A1Q99715 AC145124.1-201ENST00000528514 1361 ntTSL 2 BASIC22.37■■□□□ 1.17
COL12A1Q99715 SMKR1-201ENST00000462322 1035 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
COL12A1Q99715 Z92544.1-202ENST00000571933 1220 ntBASIC22.36■■□□□ 1.17
COL12A1Q99715 WBP1-202ENST00000393972 1325 ntTSL 2 BASIC22.36■■□□□ 1.17
COL12A1Q99715 FKBP1B-202ENST00000380991 1010 ntTSL 1 (best) BASIC22.36■■□□□ 1.17
COL12A1Q99715 VIPR2-204ENST00000421760 717 ntTSL 3 BASIC22.36■■□□□ 1.17
COL12A1Q99715 TMEM170A-202ENST00000561878 1072 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
COL12A1Q99715 AC009163.4-201ENST00000567194 530 ntAPPRIS P1 TSL 2 BASIC22.36■■□□□ 1.17
COL12A1Q99715 G6PC3-201ENST00000269097 1533 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
COL12A1Q99715 RAD51-208ENST00000532743 1515 ntTSL 2 BASIC22.35■■□□□ 1.17
COL12A1Q99715 MT1E-201ENST00000306061 704 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
COL12A1Q99715 BOD1-202ENST00000311086 1562 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
COL12A1Q99715 RDX-206ENST00000528900 1814 ntTSL 1 (best) BASIC22.35■■□□□ 1.17
COL12A1Q99715 GUCD1-207ENST00000447813 895 ntTSL 3 BASIC22.34■■□□□ 1.17
COL12A1Q99715 RASSF8-202ENST00000381352 2320 ntTSL 1 (best) BASIC22.34■■□□□ 1.17
COL12A1Q99715 KLHDC9-203ENST00000392192 1333 ntTSL 1 (best) BASIC22.34■■□□□ 1.17
COL12A1Q99715 WDR86-204ENST00000477459 1428 ntTSL 2 BASIC22.34■■□□□ 1.17
COL12A1Q99715 TPRA1-201ENST00000296210 1725 ntTSL 1 (best) BASIC22.33■■□□□ 1.17
COL12A1Q99715 PEMT-201ENST00000255389 1013 ntTSL 1 (best) BASIC22.33■■□□□ 1.17
COL12A1Q99715 PVT1_1.1-201ENST00000615125 194 ntBASIC22.33■■□□□ 1.17
COL12A1Q99715 AC139795.1-202ENST00000500444 432 ntBASIC22.33■■□□□ 1.16
COL12A1Q99715 PTPA-210ENST00000414510 1153 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
COL12A1Q99715 RPL27A-206ENST00000530022 878 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
COL12A1Q99715 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC22.32■■□□□ 1.16
COL12A1Q99715 GATA6-202ENST00000581694 2057 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
COL12A1Q99715 ZDHHC3-203ENST00000342790 1336 ntTSL 5 BASIC22.32■■□□□ 1.16
COL12A1Q99715 AC127502.1-201ENST00000399971 1502 ntBASIC22.32■■□□□ 1.16
COL12A1Q99715 SIAH1-203ENST00000394725 2147 ntAPPRIS P3 TSL 1 (best) BASIC22.32■■□□□ 1.16
COL12A1Q99715 PEX7-203ENST00000541292 945 ntTSL 5 BASIC22.32■■□□□ 1.16
COL12A1Q99715 AC074183.2-201ENST00000623112 922 ntBASIC22.32■■□□□ 1.16
COL12A1Q99715 OLFM2-201ENST00000264833 2019 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
COL12A1Q99715 SERTAD4-AS1-202ENST00000475406 591 ntTSL 2 BASIC22.31■■□□□ 1.16
COL12A1Q99715 UBAC1-201ENST00000371756 1867 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
COL12A1Q99715 REST-210ENST00000638187 1334 ntTSL 5 BASIC22.31■■□□□ 1.16
COL12A1Q99715 RBM42-205ENST00000589871 1487 ntTSL 5 BASIC22.3■■□□□ 1.16
COL12A1Q99715 DTWD2-204ENST00000515439 1275 ntTSL 5 BASIC22.3■■□□□ 1.16
COL12A1Q99715 CIB2-202ENST00000539011 1511 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
COL12A1Q99715 PABPC1L-202ENST00000217074 1263 ntTSL 5 BASIC22.3■■□□□ 1.16
COL12A1Q99715 GPRC5B-202ENST00000535671 1215 ntAPPRIS ALT2 TSL 1 (best) BASIC22.3■■□□□ 1.16
COL12A1Q99715 AC120057.4-201ENST00000624722 1615 ntBASIC22.3■■□□□ 1.16
COL12A1Q99715 MAPK8IP1P1-201ENST00000574657 1439 ntBASIC22.3■■□□□ 1.16
COL12A1Q99715 AQP1-203ENST00000409899 1009 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
COL12A1Q99715 ARHGEF7-AS2-201ENST00000425094 1239 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
COL12A1Q99715 CCDC194-202ENST00000636079 705 ntAPPRIS P1 TSL 5 BASIC22.29■■□□□ 1.16
COL12A1Q99715 TTC36-201ENST00000302783 874 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
COL12A1Q99715 GRAMD4P7-201ENST00000578182 1232 ntBASIC22.29■■□□□ 1.16
COL12A1Q99715 CNIH2-203ENST00000528852 1524 ntAPPRIS ALT1 TSL 1 (best) BASIC22.28■■□□□ 1.16
COL12A1Q99715 HOXB3-210ENST00000489475 1845 ntTSL 2 BASIC22.28■■□□□ 1.16
COL12A1Q99715 C1QTNF8-201ENST00000328449 1627 ntAPPRIS P1 TSL 5 BASIC22.28■■□□□ 1.16
COL12A1Q99715 MAPK12-201ENST00000215659 1918 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
COL12A1Q99715 FOXB2-201ENST00000376708 1299 ntAPPRIS P1 BASIC22.27■■□□□ 1.16
COL12A1Q99715 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
COL12A1Q99715 ANGPTL6-203ENST00000589181 1579 ntTSL 5 BASIC22.27■■□□□ 1.16
COL12A1Q99715 VSTM2A-202ENST00000402613 1076 ntTSL 2 BASIC22.27■■□□□ 1.15
COL12A1Q99715 RNF146-205ENST00000477776 762 ntTSL 3 BASIC22.27■■□□□ 1.15
COL12A1Q99715 CAPNS1-205ENST00000588780 1035 ntAPPRIS ALT2 TSL 5 BASIC22.27■■□□□ 1.15
COL12A1Q99715 ELK4-201ENST00000289703 2118 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
COL12A1Q99715 PYCARD-202ENST00000350605 696 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
COL12A1Q99715 AL031848.2-201ENST00000607670 837 ntBASIC22.26■■□□□ 1.15
COL12A1Q99715 PROCA1-201ENST00000301039 1566 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
COL12A1Q99715 RASSF7-202ENST00000397583 1928 ntAPPRIS P3 TSL 1 (best) BASIC22.26■■□□□ 1.15
COL12A1Q99715 PTGER1-201ENST00000292513 1421 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
COL12A1Q99715 SH3GLB2-201ENST00000372554 1985 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
COL12A1Q99715 CARS2-201ENST00000257347 1879 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
COL12A1Q99715 TAZ-201ENST00000369776 1596 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
COL12A1Q99715 NKX2-5-202ENST00000424406 1124 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
COL12A1Q99715 MTERF3-201ENST00000287025 1409 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
COL12A1Q99715 CCND3-205ENST00000415497 1843 ntTSL 2 BASIC22.24■■□□□ 1.15
COL12A1Q99715 TMEM229A-201ENST00000455783 2108 ntAPPRIS P1 BASIC22.24■■□□□ 1.15
COL12A1Q99715 P2RX2-205ENST00000352418 1200 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
COL12A1Q99715 AC126177.7-201ENST00000547904 679 ntBASIC22.23■■□□□ 1.15
COL12A1Q99715 COQ2-201ENST00000311461 1464 ntAPPRIS ALT2 TSL 5 BASIC22.22■■□□□ 1.15
COL12A1Q99715 HOXC-AS1-201ENST00000505700 548 ntTSL 2 BASIC22.22■■□□□ 1.15
COL12A1Q99715 SSBP3-204ENST00000371320 2077 ntAPPRIS P3 TSL 1 (best) BASIC22.22■■□□□ 1.15
COL12A1Q99715 PRR7-204ENST00000510492 1285 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
COL12A1Q99715 AL590094.1-201ENST00000635581 706 ntTSL 2 BASIC22.22■■□□□ 1.15
COL12A1Q99715 PPP4C-214ENST00000627746 1301 ntTSL 5 BASIC22.22■■□□□ 1.15
COL12A1Q99715 LMAN2-208ENST00000515209 1149 ntAPPRIS ALT2 TSL 3 BASIC22.21■■□□□ 1.15
COL12A1Q99715 SOCS2-202ENST00000536696 1065 ntAPPRIS P1 TSL 2 BASIC22.21■■□□□ 1.15
COL12A1Q99715 RARRES2P6-201ENST00000567333 442 ntBASIC22.21■■□□□ 1.15
COL12A1Q99715 AL139246.5-201ENST00000606645 996 ntBASIC22.21■■□□□ 1.15
COL12A1Q99715 SSBP3-202ENST00000357475 1533 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
COL12A1Q99715 TMEM134-202ENST00000393877 823 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
COL12A1Q99715 MPC1-201ENST00000341756 976 ntTSL 1 (best) BASIC22.2■■□□□ 1.14
COL12A1Q99715 MPC1-206ENST00000621630 977 ntAPPRIS ALT1 TSL 5 BASIC22.2■■□□□ 1.14
COL12A1Q99715 MPC1-207ENST00000621685 1192 ntTSL 5 BASIC22.2■■□□□ 1.14
COL12A1Q99715 MLST8-203ENST00000397124 1691 ntAPPRIS P3 TSL 5 BASIC22.2■■□□□ 1.14
COL12A1Q99715 TNFSF12-201ENST00000293825 1553 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
COL12A1Q99715 PCGF3-202ENST00000400151 1175 ntTSL 2 BASIC22.2■■□□□ 1.14
COL12A1Q99715 NKIRAS2-208ENST00000462043 585 ntTSL 4 BASIC22.2■■□□□ 1.14
COL12A1Q99715 SULT4A1-201ENST00000330884 2468 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
COL12A1Q99715 SUMF1-205ENST00000458465 1102 ntTSL 2 BASIC22.19■■□□□ 1.14
COL12A1Q99715 SDF2L1-201ENST00000248958 865 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
COL12A1Q99715 SDHAF1-201ENST00000378887 1117 ntAPPRIS P1 BASIC22.19■■□□□ 1.14
COL12A1Q99715 AL117209.1-201ENST00000560931 828 ntTSL 3 BASIC22.19■■□□□ 1.14
COL12A1Q99715 PITX3-202ENST00000539804 1187 ntAPPRIS P1 TSL 5 BASIC22.18■■□□□ 1.14
COL12A1Q99715 AC093762.1-201ENST00000641981 837 ntAPPRIS P1 BASIC22.18■■□□□ 1.14
Retrieved 100 of 98,524 protein–RNA pairs in 49 ms