Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 PLSCR3-214ENST00000619711 2066 ntTSL 5 BASIC25.6■■□□□ 1.69
SHROOM3Q8TF72 CTBP1-201ENST00000290921 2297 ntTSL 1 (best) BASIC25.6■■□□□ 1.69
SHROOM3Q8TF72 RNF19B-201ENST00000235150 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC25.59■■□□□ 1.69
SHROOM3Q8TF72 CAMKK1-201ENST00000158166 2459 ntTSL 1 (best) BASIC25.59■■□□□ 1.69
SHROOM3Q8TF72 THRA-204ENST00000546243 1909 ntAPPRIS P1 TSL 2 BASIC25.59■■□□□ 1.69
SHROOM3Q8TF72 PKM-203ENST00000389093 2279 ntTSL 5 BASIC25.59■■□□□ 1.69
SHROOM3Q8TF72 ARPC2-202ENST00000315717 1505 ntAPPRIS P1 TSL 1 (best) BASIC25.58■■□□□ 1.69
SHROOM3Q8TF72 LACTBL1-202ENST00000618559 1500 ntAPPRIS ALT2 TSL 5 BASIC25.58■■□□□ 1.69
SHROOM3Q8TF72 CTSA-203ENST00000372459 1972 ntTSL 1 (best) BASIC25.58■■□□□ 1.69
SHROOM3Q8TF72 AC009690.3-201ENST00000569547 1902 ntAPPRIS P1 TSL 2 BASIC25.58■■□□□ 1.69
SHROOM3Q8TF72 SENP3-201ENST00000321337 2611 ntAPPRIS P1 TSL 1 (best) BASIC25.58■■□□□ 1.69
SHROOM3Q8TF72 ABHD12-202ENST00000376542 1725 ntTSL 1 (best) BASIC25.58■■□□□ 1.68
SHROOM3Q8TF72 AC010907.1-201ENST00000441632 807 ntTSL 3 BASIC25.57■■□□□ 1.68
SHROOM3Q8TF72 AL118558.1-203ENST00000553701 447 ntTSL 3 BASIC25.57■■□□□ 1.68
SHROOM3Q8TF72 RTN2-208ENST00000590526 2357 ntTSL 5 BASIC25.57■■□□□ 1.68
SHROOM3Q8TF72 CLK2-203ENST00000368361 2166 ntAPPRIS ALT1 TSL 1 (best) BASIC25.57■■□□□ 1.68
SHROOM3Q8TF72 HDGF-201ENST00000357325 2380 ntAPPRIS P1 TSL 1 (best) BASIC25.57■■□□□ 1.68
SHROOM3Q8TF72 LYPD6B-203ENST00000409642 1577 ntAPPRIS P3 TSL 1 (best) BASIC25.57■■□□□ 1.68
SHROOM3Q8TF72 CAPNS1-204ENST00000587718 1558 ntAPPRIS ALT2 TSL 1 (best) BASIC25.57■■□□□ 1.68
SHROOM3Q8TF72 UNCX-201ENST00000316333 2048 ntAPPRIS P1 TSL 1 (best) BASIC25.56■■□□□ 1.68
SHROOM3Q8TF72 SURF1-201ENST00000371974 1093 ntAPPRIS P1 TSL 1 (best) BASIC25.56■■□□□ 1.68
SHROOM3Q8TF72 SURF1-205ENST00000615505 991 ntTSL 1 (best) BASIC25.56■■□□□ 1.68
SHROOM3Q8TF72 EMC10-206ENST00000598585 1610 ntAPPRIS ALT2 TSL 5 BASIC25.55■■□□□ 1.68
SHROOM3Q8TF72 WHAMMP3-201ENST00000611636 1609 ntBASIC25.55■■□□□ 1.68
SHROOM3Q8TF72 RAB40C-204ENST00000538492 2569 ntAPPRIS P1 TSL 2 BASIC25.55■■□□□ 1.68
SHROOM3Q8TF72 METRNL-202ENST00000570778 967 ntTSL 5 BASIC25.55■■□□□ 1.68
SHROOM3Q8TF72 MIR219A2-201ENST00000608502 1504 ntBASIC25.55■■□□□ 1.68
SHROOM3Q8TF72 PRR5-ARHGAP8-202ENST00000361473 2013 ntTSL 5 BASIC25.55■■□□□ 1.68
SHROOM3Q8TF72 NSMCE4A-201ENST00000369017 1224 ntTSL 1 (best) BASIC25.55■■□□□ 1.68
SHROOM3Q8TF72 LINC01918-201ENST00000436841 797 ntTSL 2 BASIC25.55■■□□□ 1.68
SHROOM3Q8TF72 AQP1-203ENST00000409899 1009 ntTSL 1 (best) BASIC25.54■■□□□ 1.68
SHROOM3Q8TF72 COPZ2-210ENST00000621465 895 ntAPPRIS P1 TSL 1 (best) BASIC25.54■■□□□ 1.68
SHROOM3Q8TF72 SHF-208ENST00000560734 1731 ntTSL 3 BASIC25.54■■□□□ 1.68
SHROOM3Q8TF72 DACT2-202ENST00000366796 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC25.53■■□□□ 1.68
SHROOM3Q8TF72 DHRS13-203ENST00000426464 1569 ntTSL 2 BASIC25.53■■□□□ 1.68
SHROOM3Q8TF72 FAM66E-202ENST00000533615 2087 ntTSL 2 BASIC25.53■■□□□ 1.68
SHROOM3Q8TF72 ZNF653-201ENST00000293771 2240 ntAPPRIS P1 TSL 1 (best) BASIC25.53■■□□□ 1.68
SHROOM3Q8TF72 GPR25-201ENST00000304244 1224 ntAPPRIS P1 BASIC25.53■■□□□ 1.68
SHROOM3Q8TF72 AC008813.1-201ENST00000536597 885 ntBASIC25.53■■□□□ 1.68
SHROOM3Q8TF72 STARD10-220ENST00000545082 1085 ntTSL 3 BASIC25.53■■□□□ 1.68
SHROOM3Q8TF72 RUNX2-211ENST00000625924 1458 ntAPPRIS ALT2 TSL 1 (best) BASIC25.53■■□□□ 1.68
SHROOM3Q8TF72 ZDHHC16-204ENST00000370842 1877 ntAPPRIS ALT1 TSL 5 BASIC25.53■■□□□ 1.68
SHROOM3Q8TF72 NKPD1-202ENST00000589776 1950 ntAPPRIS P1 BASIC25.53■■□□□ 1.68
SHROOM3Q8TF72 KIF13A-207ENST00000502704 1330 ntTSL 1 (best) BASIC25.51■■□□□ 1.67
SHROOM3Q8TF72 RTN2-202ENST00000344680 2063 ntAPPRIS P1 TSL 1 (best) BASIC25.51■■□□□ 1.67
SHROOM3Q8TF72 MEN1-204ENST00000377313 1871 ntAPPRIS P3 TSL 2 BASIC25.51■■□□□ 1.67
SHROOM3Q8TF72 PARD6A-201ENST00000219255 1248 ntAPPRIS P3 TSL 1 (best) BASIC25.5■■□□□ 1.67
SHROOM3Q8TF72 EIF5A-208ENST00000573542 1089 ntAPPRIS P1 TSL 2 BASIC25.5■■□□□ 1.67
SHROOM3Q8TF72 AC092902.2-221ENST00000628476 965 ntTSL 5 BASIC25.5■■□□□ 1.67
SHROOM3Q8TF72 AL449106.1-201ENST00000608517 1980 ntBASIC25.5■■□□□ 1.67
SHROOM3Q8TF72 ROM1-201ENST00000278833 1878 ntAPPRIS P2 TSL 1 (best) BASIC25.5■■□□□ 1.67
SHROOM3Q8TF72 U2AF1-201ENST00000291552 962 ntAPPRIS P3 TSL 1 (best) BASIC25.49■■□□□ 1.67
SHROOM3Q8TF72 CHST11-203ENST00000547956 936 ntTSL 2 BASIC25.49■■□□□ 1.67
SHROOM3Q8TF72 U2AF1L5-202ENST00000619610 813 ntAPPRIS ALT2 TSL 1 (best) BASIC25.49■■□□□ 1.67
SHROOM3Q8TF72 TXNRD2-205ENST00000400525 1874 ntTSL 5 BASIC25.49■■□□□ 1.67
SHROOM3Q8TF72 RAB3IL1-202ENST00000394836 2284 ntAPPRIS P1 TSL 1 (best) BASIC25.49■■□□□ 1.67
SHROOM3Q8TF72 DHFR-203ENST00000505337 1719 ntAPPRIS P1 TSL 2 BASIC25.49■■□□□ 1.67
SHROOM3Q8TF72 FRAT2-201ENST00000371019 2213 ntAPPRIS P1 BASIC25.48■■□□□ 1.67
SHROOM3Q8TF72 C14orf80-205ENST00000392523 1845 ntAPPRIS ALT2 TSL 1 (best) BASIC25.48■■□□□ 1.67
SHROOM3Q8TF72 NPDC1-201ENST00000371600 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC25.48■■□□□ 1.67
SHROOM3Q8TF72 MRPL4-201ENST00000253099 1455 ntAPPRIS P2 TSL 1 (best) BASIC25.48■■□□□ 1.67
SHROOM3Q8TF72 NR6A1-203ENST00000416460 1898 ntAPPRIS ALT2 TSL 1 (best) BASIC25.48■■□□□ 1.67
SHROOM3Q8TF72 CAPNS1-215ENST00000628018 1509 ntAPPRIS ALT2 TSL 5 BASIC25.48■■□□□ 1.67
SHROOM3Q8TF72 C11orf80-210ENST00000527634 1666 ntAPPRIS ALT2 TSL 5 BASIC25.47■■□□□ 1.67
SHROOM3Q8TF72 LAGE3-201ENST00000357360 949 ntAPPRIS P1 TSL 1 (best) BASIC25.47■■□□□ 1.67
SHROOM3Q8TF72 CMPK2-203ENST00000458098 1224 ntTSL 1 (best) BASIC25.47■■□□□ 1.67
SHROOM3Q8TF72 LINC01896-206ENST00000575722 1256 ntTSL 2 BASIC25.47■■□□□ 1.67
SHROOM3Q8TF72 SAE1-209ENST00000598840 1831 ntTSL 5 BASIC25.47■■□□□ 1.67
SHROOM3Q8TF72 C11orf80-204ENST00000525908 2135 ntAPPRIS P3 TSL 2 BASIC25.47■■□□□ 1.67
SHROOM3Q8TF72 AC009041.3-201ENST00000564390 879 ntTSL 5 BASIC25.47■■□□□ 1.67
SHROOM3Q8TF72 ZNF768-201ENST00000380412 2315 ntAPPRIS P2 TSL 1 (best) BASIC25.46■■□□□ 1.67
SHROOM3Q8TF72 MXRA7-202ENST00000375036 1950 ntAPPRIS ALT2 TSL 2 BASIC25.46■■□□□ 1.67
SHROOM3Q8TF72 FADD-201ENST00000301838 1841 ntAPPRIS P1 TSL 1 (best) BASIC25.46■■□□□ 1.67
SHROOM3Q8TF72 ABHD17AP3-201ENST00000503096 1137 ntBASIC25.45■■□□□ 1.67
SHROOM3Q8TF72 BBC3-204ENST00000449228 1827 ntTSL 1 (best) BASIC25.45■■□□□ 1.66
SHROOM3Q8TF72 NPB-202ENST00000573081 2154 ntAPPRIS ALT2 BASIC25.45■■□□□ 1.66
SHROOM3Q8TF72 KDM4C-203ENST00000401787 1406 ntTSL 1 (best) BASIC25.44■■□□□ 1.66
SHROOM3Q8TF72 CCKBR-201ENST00000334619 2121 ntAPPRIS P1 TSL 1 (best) BASIC25.44■■□□□ 1.66
SHROOM3Q8TF72 CLTA-207ENST00000470744 1102 ntTSL 2 BASIC25.44■■□□□ 1.66
SHROOM3Q8TF72 PTPRF-216ENST00000617451 1129 ntTSL 5 BASIC25.44■■□□□ 1.66
SHROOM3Q8TF72 CDC34-201ENST00000215574 1471 ntAPPRIS P1 TSL 1 (best) BASIC25.44■■□□□ 1.66
SHROOM3Q8TF72 VIPR2-203ENST00000402066 1926 ntAPPRIS ALT2 TSL 5 BASIC25.43■■□□□ 1.66
SHROOM3Q8TF72 POU3F3-201ENST00000361360 3064 ntAPPRIS P1 BASIC25.43■■□□□ 1.66
SHROOM3Q8TF72 SOWAHD-201ENST00000343905 1552 ntAPPRIS P1 BASIC25.43■■□□□ 1.66
SHROOM3Q8TF72 AC016595.1-201ENST00000559410 383 ntTSL 3 BASIC25.43■■□□□ 1.66
SHROOM3Q8TF72 DCUN1D5-201ENST00000260247 1337 ntAPPRIS P1 TSL 1 (best) BASIC25.43■■□□□ 1.66
SHROOM3Q8TF72 MRPL51-201ENST00000229238 1234 ntAPPRIS P1 TSL 1 (best) BASIC25.42■■□□□ 1.66
SHROOM3Q8TF72 VSIG8-201ENST00000368100 1818 ntAPPRIS P1 TSL 1 (best) BASIC25.42■■□□□ 1.66
SHROOM3Q8TF72 CYB5R3-201ENST00000352397 2124 ntAPPRIS P1 TSL 1 (best) BASIC25.42■■□□□ 1.66
SHROOM3Q8TF72 CRELD2-203ENST00000404488 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC25.41■■□□□ 1.66
SHROOM3Q8TF72 CBWD5-202ENST00000377384 1347 ntTSL 1 (best) BASIC25.41■■□□□ 1.66
SHROOM3Q8TF72 RCOR3-202ENST00000367006 2525 ntTSL 1 (best) BASIC25.41■■□□□ 1.66
SHROOM3Q8TF72 CDPF1-201ENST00000314567 1875 ntAPPRIS P2 TSL 1 (best) BASIC25.41■■□□□ 1.66
SHROOM3Q8TF72 PDF-201ENST00000288022 1158 ntAPPRIS P1 TSL 1 (best) BASIC25.41■■□□□ 1.66
SHROOM3Q8TF72 BOK-AS1-201ENST00000434306 643 ntTSL 1 (best) BASIC25.41■■□□□ 1.66
SHROOM3Q8TF72 GAL3ST3-203ENST00000527878 1599 ntAPPRIS P1 TSL 1 (best) BASIC25.41■■□□□ 1.66
SHROOM3Q8TF72 BCL7B-202ENST00000411832 1458 ntTSL 2 BASIC25.41■■□□□ 1.66
SHROOM3Q8TF72 ANKS3-203ENST00000450067 2272 ntTSL 5 BASIC25.41■■□□□ 1.66
SHROOM3Q8TF72 NXPH3-201ENST00000328741 2179 ntAPPRIS P1 TSL 1 (best) BASIC25.4■■□□□ 1.66
SHROOM3Q8TF72 NME2-205ENST00000512737 826 ntAPPRIS P1 TSL 1 (best) BASIC25.4■■□□□ 1.66
Retrieved 100 of 98,524 protein–RNA pairs in 36.8 ms