Protein–RNA interactions for Protein: Q8R370

Ushbp1, Usher syndrome type-1C protein-binding protein 1, mousemouse

Predictions only

Length 680 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ushbp1Q8R370 Nek6-202ENSMUST00000112895 1513 ntAPPRIS P1 TSL 1 (best) BASIC25.47■■□□□ 1.67
Ushbp1Q8R370 Arx-202ENSMUST00000113947 2454 ntAPPRIS P1 TSL 1 (best) BASIC25.46■■□□□ 1.67
Ushbp1Q8R370 Dnajc21-201ENSMUST00000136591 2060 ntAPPRIS P1 TSL 5 BASIC25.46■■□□□ 1.67
Ushbp1Q8R370 Nt5c3-201ENSMUST00000031793 1676 ntAPPRIS P3 TSL 1 (best) BASIC25.45■■□□□ 1.67
Ushbp1Q8R370 Ltb4r1-201ENSMUST00000057569 1394 ntAPPRIS P1 TSL 1 (best) BASIC25.45■■□□□ 1.67
Ushbp1Q8R370 Ran-202ENSMUST00000111343 2423 ntAPPRIS P1 TSL 1 (best) BASIC25.45■■□□□ 1.67
Ushbp1Q8R370 D16Ertd472e-201ENSMUST00000114218 1271 ntAPPRIS P1 TSL 5 BASIC25.45■■□□□ 1.66
Ushbp1Q8R370 Scarna2-201ENSMUST00000157560 414 ntBASIC25.45■■□□□ 1.66
Ushbp1Q8R370 Nkx2-4-201ENSMUST00000067020 1725 ntAPPRIS P1 TSL 1 (best) BASIC25.45■■□□□ 1.66
Ushbp1Q8R370 2310061I04Rik-202ENSMUST00000146451 2081 ntTSL 1 (best) BASIC25.44■■□□□ 1.66
Ushbp1Q8R370 Rasgef1c-203ENSMUST00000093142 2216 ntAPPRIS P3 TSL 1 (best) BASIC25.44■■□□□ 1.66
Ushbp1Q8R370 Gm8098-201ENSMUST00000146985 1499 ntTSL 1 (best) BASIC25.44■■□□□ 1.66
Ushbp1Q8R370 Gng12-204ENSMUST00000114225 1876 ntAPPRIS P1 TSL 1 (best) BASIC25.44■■□□□ 1.66
Ushbp1Q8R370 Efna3-201ENSMUST00000029673 2363 ntAPPRIS P2 TSL 1 (best) BASIC25.44■■□□□ 1.66
Ushbp1Q8R370 Ier5l-201ENSMUST00000065134 2683 ntAPPRIS P1 BASIC25.43■■□□□ 1.66
Ushbp1Q8R370 AC125444.1-201ENSMUST00000223536 639 ntAPPRIS P1 BASIC25.43■■□□□ 1.66
Ushbp1Q8R370 Zswim6-201ENSMUST00000105097 5456 ntTSL 5 BASIC25.43■■□□□ 1.66
Ushbp1Q8R370 Foxd2-201ENSMUST00000068654 2592 ntAPPRIS P1 BASIC25.43■■□□□ 1.66
Ushbp1Q8R370 2610307P16Rik-205ENSMUST00000148885 1870 ntTSL 1 (best) BASIC25.42■■□□□ 1.66
Ushbp1Q8R370 Slc16a11-211ENSMUST00000171032 1754 ntAPPRIS P1 TSL 5 BASIC25.41■■□□□ 1.66
Ushbp1Q8R370 Gm45051-201ENSMUST00000206838 963 ntTSL 1 (best) BASIC25.41■■□□□ 1.66
Ushbp1Q8R370 Rnaseh2c-201ENSMUST00000025864 1126 ntAPPRIS P1 TSL 1 (best) BASIC25.41■■□□□ 1.66
Ushbp1Q8R370 Fbl-201ENSMUST00000042405 1197 ntAPPRIS P1 TSL 1 (best) BASIC25.41■■□□□ 1.66
Ushbp1Q8R370 Tmem70-203ENSMUST00000177501 1636 ntAPPRIS P3 TSL 1 (best) BASIC25.41■■□□□ 1.66
Ushbp1Q8R370 Tmem98-201ENSMUST00000040865 1633 ntAPPRIS P1 TSL 1 (best) BASIC25.41■■□□□ 1.66
Ushbp1Q8R370 E130309D02Rik-201ENSMUST00000046418 2208 ntAPPRIS P1 TSL 1 (best) BASIC25.4■■□□□ 1.66
Ushbp1Q8R370 Upf3a-201ENSMUST00000043767 2057 ntAPPRIS P1 TSL 1 (best) BASIC25.4■■□□□ 1.66
Ushbp1Q8R370 Jmjd6-201ENSMUST00000047616 1668 ntAPPRIS P1 TSL 1 (best) BASIC25.4■■□□□ 1.66
Ushbp1Q8R370 Gdf7-202ENSMUST00000220073 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC25.4■■□□□ 1.66
Ushbp1Q8R370 A330041J22Rik-201ENSMUST00000150367 1825 ntTSL 1 (best) BASIC25.4■■□□□ 1.66
Ushbp1Q8R370 Nrsn1-201ENSMUST00000057866 2222 ntAPPRIS P1 TSL 1 (best) BASIC25.39■■□□□ 1.66
Ushbp1Q8R370 Rp9-201ENSMUST00000034763 1134 ntAPPRIS P2 TSL 1 (best) BASIC25.39■■□□□ 1.66
Ushbp1Q8R370 Fam149b-201ENSMUST00000037698 924 ntTSL 1 (best) BASIC25.39■■□□□ 1.66
Ushbp1Q8R370 Ccsap-201ENSMUST00000034452 2390 ntAPPRIS P1 TSL 1 (best) BASIC25.38■■□□□ 1.65
Ushbp1Q8R370 Dbndd2-202ENSMUST00000069385 1658 ntAPPRIS P1 TSL 1 (best) BASIC25.38■■□□□ 1.65
Ushbp1Q8R370 Tlx2-202ENSMUST00000174674 1514 ntTSL 1 (best) BASIC25.37■■□□□ 1.65
Ushbp1Q8R370 Sh3d21-202ENSMUST00000097891 2384 ntAPPRIS P1 TSL 1 (best) BASIC25.37■■□□□ 1.65
Ushbp1Q8R370 Thap8-202ENSMUST00000108187 1184 ntAPPRIS P5 TSL 2 BASIC25.37■■□□□ 1.65
Ushbp1Q8R370 Tmem192-202ENSMUST00000079896 916 ntTSL 1 (best) BASIC25.37■■□□□ 1.65
Ushbp1Q8R370 Vps37b-201ENSMUST00000040967 2522 ntAPPRIS P1 TSL 1 (best) BASIC25.37■■□□□ 1.65
Ushbp1Q8R370 Efhd2-201ENSMUST00000036854 2381 ntAPPRIS P1 TSL 1 (best) BASIC25.37■■□□□ 1.65
Ushbp1Q8R370 Npas1-201ENSMUST00000002053 2091 ntAPPRIS P1 TSL 5 BASIC25.36■■□□□ 1.65
Ushbp1Q8R370 Gm11687-201ENSMUST00000118911 886 ntBASIC25.36■■□□□ 1.65
Ushbp1Q8R370 Pde6d-201ENSMUST00000027444 1159 ntAPPRIS P1 TSL 1 (best) BASIC25.36■■□□□ 1.65
Ushbp1Q8R370 Sh3gl3-201ENSMUST00000032874 1647 ntAPPRIS P1 TSL 1 (best) BASIC25.36■■□□□ 1.65
Ushbp1Q8R370 Coro1b-201ENSMUST00000008893 1888 ntAPPRIS P1 TSL 1 (best) BASIC25.36■■□□□ 1.65
Ushbp1Q8R370 Acvr2b-201ENSMUST00000035093 1729 ntTSL 5 BASIC25.35■■□□□ 1.65
Ushbp1Q8R370 Krtap17-1-201ENSMUST00000105049 761 ntAPPRIS P1 BASIC25.35■■□□□ 1.65
Ushbp1Q8R370 Stbd1-202ENSMUST00000200941 523 ntTSL 1 (best) BASIC25.35■■□□□ 1.65
Ushbp1Q8R370 Vmac-201ENSMUST00000067931 2174 ntAPPRIS P3 TSL 1 (best) BASIC25.35■■□□□ 1.65
Ushbp1Q8R370 H1f0-201ENSMUST00000180086 2287 ntAPPRIS P1 BASIC25.34■■□□□ 1.65
Ushbp1Q8R370 A230020J21Rik-202ENSMUST00000192407 1649 ntTSL 2 BASIC25.34■■□□□ 1.65
Ushbp1Q8R370 Rps2-ps13-201ENSMUST00000117295 882 ntBASIC25.34■■□□□ 1.65
Ushbp1Q8R370 Gm12366-201ENSMUST00000121722 873 ntBASIC25.34■■□□□ 1.65
Ushbp1Q8R370 Rps2-206ENSMUST00000146867 962 ntTSL 5 BASIC25.34■■□□□ 1.65
Ushbp1Q8R370 Cox4i1-205ENSMUST00000181586 765 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
Ushbp1Q8R370 Crct1-201ENSMUST00000029521 718 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
Ushbp1Q8R370 Dcun1d5-201ENSMUST00000034499 1122 ntTSL 1 (best) BASIC25.34■■□□□ 1.65
Ushbp1Q8R370 Gadd45a-201ENSMUST00000043098 1223 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
Ushbp1Q8R370 Gm9806-201ENSMUST00000051080 552 ntBASIC25.34■■□□□ 1.65
Ushbp1Q8R370 Rps2-ps10-201ENSMUST00000076842 879 ntBASIC25.34■■□□□ 1.65
Ushbp1Q8R370 Gm5786-201ENSMUST00000085368 882 ntBASIC25.34■■□□□ 1.65
Ushbp1Q8R370 Mast2-203ENSMUST00000106485 5705 ntAPPRIS ALT2 TSL 1 (best) BASIC25.34■■□□□ 1.65
Ushbp1Q8R370 Mast2-204ENSMUST00000106486 5723 ntAPPRIS P4 TSL 1 (best) BASIC25.34■■□□□ 1.65
Ushbp1Q8R370 Pdcd4-201ENSMUST00000025931 2330 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
Ushbp1Q8R370 Sh3rf1-201ENSMUST00000034060 5479 ntAPPRIS P1 TSL 1 (best) BASIC25.33■■□□□ 1.65
Ushbp1Q8R370 Slc44a1-203ENSMUST00000107646 1974 ntTSL 5 BASIC25.33■■□□□ 1.65
Ushbp1Q8R370 Wnt5b-203ENSMUST00000119369 2339 ntTSL 1 (best) BASIC25.33■■□□□ 1.65
Ushbp1Q8R370 Gli3-204ENSMUST00000141194 466 ntTSL 2 BASIC25.33■■□□□ 1.65
Ushbp1Q8R370 Mrps15-201ENSMUST00000030675 937 ntAPPRIS P1 TSL 1 (best) BASIC25.33■■□□□ 1.65
Ushbp1Q8R370 1700020L24Rik-201ENSMUST00000037378 949 ntAPPRIS P1 TSL 1 (best) BASIC25.33■■□□□ 1.65
Ushbp1Q8R370 Foxa2-202ENSMUST00000109964 2070 ntAPPRIS ALT2 TSL 1 (best) BASIC25.33■■□□□ 1.65
Ushbp1Q8R370 Gm42699-201ENSMUST00000198104 1657 ntBASIC25.32■■□□□ 1.64
Ushbp1Q8R370 Ubp1-204ENSMUST00000214095 2320 ntAPPRIS ALT1 TSL 1 (best) BASIC25.32■■□□□ 1.64
Ushbp1Q8R370 Wnt2-201ENSMUST00000010941 2255 ntAPPRIS P1 TSL 1 (best) BASIC25.32■■□□□ 1.64
Ushbp1Q8R370 Atp5j-201ENSMUST00000023608 809 ntAPPRIS P1 TSL 1 (best) BASIC25.32■■□□□ 1.64
Ushbp1Q8R370 Gm16437-201ENSMUST00000025669 507 ntBASIC25.32■■□□□ 1.64
Ushbp1Q8R370 Gm4799-201ENSMUST00000095396 657 ntBASIC25.32■■□□□ 1.64
Ushbp1Q8R370 Ube2g2-204ENSMUST00000174510 2031 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
Ushbp1Q8R370 Mpped1-208ENSMUST00000163723 1064 ntTSL 5 BASIC25.31■■□□□ 1.64
Ushbp1Q8R370 Smagp-201ENSMUST00000066068 1132 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
Ushbp1Q8R370 St6galnac6-203ENSMUST00000095044 2394 ntAPPRIS P3 TSL 1 (best) BASIC25.31■■□□□ 1.64
Ushbp1Q8R370 Rundc3b-202ENSMUST00000115378 1891 ntAPPRIS ALT2 TSL 5 BASIC25.3■■□□□ 1.64
Ushbp1Q8R370 Klhl15-202ENSMUST00000113908 1235 ntTSL 1 (best) BASIC25.3■■□□□ 1.64
Ushbp1Q8R370 Shb-201ENSMUST00000061986 2244 ntAPPRIS P1 TSL 1 (best) BASIC25.29■■□□□ 1.64
Ushbp1Q8R370 Gm43573-201ENSMUST00000196445 570 ntTSL 5 BASIC25.29■■□□□ 1.64
Ushbp1Q8R370 Prr3-201ENSMUST00000055454 2727 ntAPPRIS P3 TSL 1 (best) BASIC25.29■■□□□ 1.64
Ushbp1Q8R370 Rnf39-201ENSMUST00000040498 1579 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
Ushbp1Q8R370 Vegfa-211ENSMUST00000167860 975 ntTSL 1 (best) BASIC25.28■■□□□ 1.64
Ushbp1Q8R370 Gm26917-201ENSMUST00000182520 869 ntTSL 5 BASIC25.28■■□□□ 1.64
Ushbp1Q8R370 Vegfa-212ENSMUST00000214739 1107 ntAPPRIS ALT2 TSL 1 (best) BASIC25.28■■□□□ 1.64
Ushbp1Q8R370 Vegfa-213ENSMUST00000217017 1179 ntAPPRIS P4 TSL 1 (best) BASIC25.28■■□□□ 1.64
Ushbp1Q8R370 Kctd2-201ENSMUST00000103035 1764 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
Ushbp1Q8R370 Il17rd-202ENSMUST00000223942 2186 ntBASIC25.27■■□□□ 1.64
Ushbp1Q8R370 Bag2-201ENSMUST00000044691 1860 ntAPPRIS P1 TSL 1 (best) BASIC25.27■■□□□ 1.64
Ushbp1Q8R370 Hgh1-201ENSMUST00000023213 1959 ntAPPRIS P1 TSL 1 (best) BASIC25.27■■□□□ 1.64
Ushbp1Q8R370 Scn1b-201ENSMUST00000098548 1573 ntAPPRIS P1 TSL 1 (best) BASIC25.27■■□□□ 1.64
Ushbp1Q8R370 Fance-203ENSMUST00000114803 1980 ntTSL 1 (best) BASIC25.26■■□□□ 1.63
Ushbp1Q8R370 Plvap-201ENSMUST00000048452 1987 ntAPPRIS P1 TSL 1 (best) BASIC25.26■■□□□ 1.63
Ushbp1Q8R370 Kdf1-202ENSMUST00000105901 1699 ntAPPRIS P2 TSL 1 (best) BASIC25.26■■□□□ 1.63
Retrieved 100 of 76,532 protein–RNA pairs in 207.9 ms