Protein–RNA interactions for Protein: Q8K4L0

Ddx54, ATP-dependent RNA helicase DDX54, mousemouse

Known RBP Predictions only

Length 874 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx54Q8K4L0 Hdac3-201ENSMUST00000043498 2004 ntAPPRIS P1 TSL 1 (best) BASIC30.79■■■□□ 2.52
Ddx54Q8K4L0 Shf-203ENSMUST00000110531 1557 ntAPPRIS P2 TSL 5 BASIC30.79■■■□□ 2.52
Ddx54Q8K4L0 March2-203ENSMUST00000172767 1381 ntAPPRIS P1 TSL 1 (best) BASIC30.78■■■□□ 2.52
Ddx54Q8K4L0 Pdf-201ENSMUST00000055316 1306 ntAPPRIS P1 TSL 1 (best) BASIC30.77■■■□□ 2.52
Ddx54Q8K4L0 Dhrs11-201ENSMUST00000047560 1254 ntAPPRIS P1 TSL 1 (best) BASIC30.77■■■□□ 2.52
Ddx54Q8K4L0 Polr1d-201ENSMUST00000050970 1196 ntAPPRIS P1 TSL 1 (best) BASIC30.77■■■□□ 2.52
Ddx54Q8K4L0 Tmpo-205ENSMUST00000105293 1842 ntTSL 1 (best) BASIC30.77■■■□□ 2.52
Ddx54Q8K4L0 Fads2-201ENSMUST00000025567 1508 ntAPPRIS P1 TSL 1 (best) BASIC30.77■■■□□ 2.52
Ddx54Q8K4L0 Mta3-201ENSMUST00000067826 2087 ntAPPRIS P3 TSL 1 (best) BASIC30.77■■■□□ 2.52
Ddx54Q8K4L0 4930597O21Rik-201ENSMUST00000065878 984 ntTSL 1 (best) BASIC30.76■■■□□ 2.51
Ddx54Q8K4L0 Mapkap1-202ENSMUST00000113124 1758 ntAPPRIS ALT1 TSL 5 BASIC30.76■■■□□ 2.51
Ddx54Q8K4L0 Mir155hg-202ENSMUST00000185662 1362 ntTSL 5 BASIC30.76■■■□□ 2.51
Ddx54Q8K4L0 Adgrb2-207ENSMUST00000120204 5170 ntAPPRIS ALT2 TSL 1 (best) BASIC30.75■■■□□ 2.51
Ddx54Q8K4L0 Lsm4-201ENSMUST00000034311 925 ntAPPRIS P1 TSL 1 (best) BASIC30.75■■■□□ 2.51
Ddx54Q8K4L0 Cadm1-206ENSMUST00000143026 1643 ntTSL 5 BASIC30.74■■■□□ 2.51
Ddx54Q8K4L0 Jdp2-201ENSMUST00000050687 1643 ntAPPRIS P1 TSL 1 (best) BASIC30.74■■■□□ 2.51
Ddx54Q8K4L0 Tmem120b-202ENSMUST00000111619 1256 ntTSL 1 (best) BASIC30.74■■■□□ 2.51
Ddx54Q8K4L0 Gm20684-201ENSMUST00000176744 380 ntTSL 3 BASIC30.74■■■□□ 2.51
Ddx54Q8K4L0 March5-202ENSMUST00000112391 1293 ntTSL 1 (best) BASIC30.73■■■□□ 2.51
Ddx54Q8K4L0 Dnttip1-201ENSMUST00000017443 1664 ntAPPRIS P1 TSL 1 (best) BASIC30.72■■■□□ 2.51
Ddx54Q8K4L0 Ppp1ca-201ENSMUST00000046094 1379 ntAPPRIS P1 TSL 1 (best) BASIC30.72■■■□□ 2.51
Ddx54Q8K4L0 Gm16599-201ENSMUST00000148082 1182 ntTSL 1 (best) BASIC30.72■■■□□ 2.51
Ddx54Q8K4L0 Gm17494-201ENSMUST00000072769 1800 ntTSL 1 (best) BASIC30.72■■■□□ 2.51
Ddx54Q8K4L0 Msantd2-201ENSMUST00000048604 2291 ntAPPRIS P1 TSL 1 (best) BASIC30.71■■■□□ 2.51
Ddx54Q8K4L0 Pgls-205ENSMUST00000143441 1062 ntTSL 3 BASIC30.71■■■□□ 2.51
Ddx54Q8K4L0 Pcf11-204ENSMUST00000208058 461 ntTSL 5 BASIC30.71■■■□□ 2.51
Ddx54Q8K4L0 AC122379.1-201ENSMUST00000220658 355 ntTSL 3 BASIC30.71■■■□□ 2.51
Ddx54Q8K4L0 1700016K19Rik-201ENSMUST00000066408 921 ntAPPRIS P1 TSL 1 (best) BASIC30.71■■■□□ 2.51
Ddx54Q8K4L0 Phf23-201ENSMUST00000018716 2006 ntAPPRIS P3 TSL 1 (best) BASIC30.71■■■□□ 2.51
Ddx54Q8K4L0 Cckbr-202ENSMUST00000181339 1326 ntTSL 1 (best) BASIC30.71■■■□□ 2.51
Ddx54Q8K4L0 Hrh3-205ENSMUST00000165762 1368 ntAPPRIS ALT2 TSL 5 BASIC30.7■■■□□ 2.51
Ddx54Q8K4L0 Gm9767-201ENSMUST00000041011 1193 ntAPPRIS P1 BASIC30.7■■■□□ 2.51
Ddx54Q8K4L0 Rundc3a-201ENSMUST00000006750 2046 ntAPPRIS P2 TSL 1 (best) BASIC30.69■■■□□ 2.5
Ddx54Q8K4L0 AC117245.1-201ENSMUST00000215481 566 ntTSL 3 BASIC30.69■■■□□ 2.5
Ddx54Q8K4L0 Ube2k-206ENSMUST00000201984 1449 ntTSL 3 BASIC30.69■■■□□ 2.5
Ddx54Q8K4L0 Ube2i-206ENSMUST00000172618 1559 ntAPPRIS P1 TSL 1 (best) BASIC30.69■■■□□ 2.5
Ddx54Q8K4L0 Gm26859-201ENSMUST00000181743 1852 ntTSL 5 BASIC30.69■■■□□ 2.5
Ddx54Q8K4L0 Dazap1-201ENSMUST00000092305 1994 ntAPPRIS ALT1 TSL 1 (best) BASIC30.68■■■□□ 2.5
Ddx54Q8K4L0 Eed-201ENSMUST00000107234 2067 ntAPPRIS P1 TSL 1 (best) BASIC30.68■■■□□ 2.5
Ddx54Q8K4L0 Clk2-201ENSMUST00000090927 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC30.68■■■□□ 2.5
Ddx54Q8K4L0 Gm18755-201ENSMUST00000218030 1099 ntBASIC30.67■■■□□ 2.5
Ddx54Q8K4L0 Tpst1-201ENSMUST00000040721 2050 ntAPPRIS P1 TSL 1 (best) BASIC30.66■■■□□ 2.5
Ddx54Q8K4L0 Ipmk-203ENSMUST00000121446 1492 ntAPPRIS ALT2 TSL 5 BASIC30.66■■■□□ 2.5
Ddx54Q8K4L0 Kcnip3-202ENSMUST00000088538 1296 ntAPPRIS P1 TSL 1 (best) BASIC30.66■■■□□ 2.5
Ddx54Q8K4L0 Fn1-208ENSMUST00000186940 1350 ntTSL 1 (best) BASIC30.66■■■□□ 2.5
Ddx54Q8K4L0 Esrra-201ENSMUST00000025906 2242 ntAPPRIS P1 TSL 1 (best) BASIC30.65■■■□□ 2.5
Ddx54Q8K4L0 Raly-201ENSMUST00000029120 1802 ntAPPRIS ALT2 TSL 5 BASIC30.63■■■□□ 2.49
Ddx54Q8K4L0 Marveld2-202ENSMUST00000163163 2187 ntTSL 1 (best) BASIC30.63■■■□□ 2.49
Ddx54Q8K4L0 Arl8a-201ENSMUST00000027684 1713 ntAPPRIS P1 TSL 1 (best) BASIC30.62■■■□□ 2.49
Ddx54Q8K4L0 Slc37a3-211ENSMUST00000202749 434 ntTSL 5 BASIC30.62■■■□□ 2.49
Ddx54Q8K4L0 Ctxn1-201ENSMUST00000053252 1212 ntAPPRIS P1 TSL 1 (best) BASIC30.62■■■□□ 2.49
Ddx54Q8K4L0 Barx1-201ENSMUST00000021813 1399 ntAPPRIS P1 TSL 1 (best) BASIC30.62■■■□□ 2.49
Ddx54Q8K4L0 Galnt10-202ENSMUST00000108846 1745 ntTSL 1 (best) BASIC30.61■■■□□ 2.49
Ddx54Q8K4L0 Snrpb-201ENSMUST00000103199 1161 ntAPPRIS P1 TSL 1 (best) BASIC30.61■■■□□ 2.49
Ddx54Q8K4L0 Ost4-202ENSMUST00000132253 1144 ntAPPRIS P1 TSL 1 (best) BASIC30.61■■■□□ 2.49
Ddx54Q8K4L0 Fam168b-204ENSMUST00000170092 941 ntTSL 5 BASIC30.61■■■□□ 2.49
Ddx54Q8K4L0 Ccdc85c-201ENSMUST00000136175 1302 ntAPPRIS ALT2 TSL 5 BASIC30.6■■■□□ 2.49
Ddx54Q8K4L0 Sh3gl3-201ENSMUST00000032874 1647 ntAPPRIS P1 TSL 1 (best) BASIC30.59■■■□□ 2.49
Ddx54Q8K4L0 Serp2-204ENSMUST00000228055 705 ntBASIC30.59■■■□□ 2.49
Ddx54Q8K4L0 Dmwd-201ENSMUST00000032570 2494 ntAPPRIS P2 TSL 1 (best) BASIC30.59■■■□□ 2.49
Ddx54Q8K4L0 Ppp1r3e-202ENSMUST00000177403 1957 ntAPPRIS P1 TSL 5 BASIC30.59■■■□□ 2.49
Ddx54Q8K4L0 Dtnb-211ENSMUST00000173240 2218 ntTSL 5 BASIC30.58■■■□□ 2.49
Ddx54Q8K4L0 Cnot6l-203ENSMUST00000122003 2089 ntTSL 1 (best) BASIC30.58■■■□□ 2.49
Ddx54Q8K4L0 Dusp15-202ENSMUST00000109811 753 ntTSL 1 (best) BASIC30.58■■■□□ 2.49
Ddx54Q8K4L0 Pgp-201ENSMUST00000053024 1027 ntAPPRIS P1 TSL 1 (best) BASIC30.58■■■□□ 2.49
Ddx54Q8K4L0 Kctd6-201ENSMUST00000022272 1650 ntAPPRIS P1 TSL 1 (best) BASIC30.58■■■□□ 2.49
Ddx54Q8K4L0 D730045B01Rik-202ENSMUST00000186838 1543 ntTSL 1 (best) BASIC30.57■■■□□ 2.49
Ddx54Q8K4L0 Usp2-206ENSMUST00000176416 1486 ntAPPRIS ALT2 TSL 1 (best) BASIC30.57■■■□□ 2.48
Ddx54Q8K4L0 Zfp346-203ENSMUST00000159278 1253 ntAPPRIS ALT2 TSL 5 BASIC30.57■■■□□ 2.48
Ddx54Q8K4L0 Pate2-201ENSMUST00000098906 1690 ntAPPRIS ALT2 TSL 2 BASIC30.57■■■□□ 2.48
Ddx54Q8K4L0 Hoxd8-201ENSMUST00000019749 2634 ntAPPRIS P3 TSL 1 (best) BASIC30.57■■■□□ 2.48
Ddx54Q8K4L0 Socs1-201ENSMUST00000038099 1220 ntAPPRIS P1 TSL 1 (best) BASIC30.56■■■□□ 2.48
Ddx54Q8K4L0 Tlx2-201ENSMUST00000089641 1236 ntAPPRIS P1 TSL 1 (best) BASIC30.56■■■□□ 2.48
Ddx54Q8K4L0 Lrfn1-203ENSMUST00000189877 1852 ntAPPRIS P3 TSL 5 BASIC30.56■■■□□ 2.48
Ddx54Q8K4L0 Ntn5-203ENSMUST00000183120 1491 ntTSL 1 (best) BASIC30.56■■■□□ 2.48
Ddx54Q8K4L0 Dynlt1f-201ENSMUST00000179554 807 ntAPPRIS P1 TSL 1 (best) BASIC30.55■■■□□ 2.48
Ddx54Q8K4L0 Zfp358-201ENSMUST00000061508 1999 ntAPPRIS P1 TSL 1 (best) BASIC30.55■■■□□ 2.48
Ddx54Q8K4L0 A230020J21Rik-202ENSMUST00000192407 1649 ntTSL 2 BASIC30.55■■■□□ 2.48
Ddx54Q8K4L0 E130218I03Rik-208ENSMUST00000144222 1729 ntAPPRIS P1 TSL 1 (best) BASIC30.54■■■□□ 2.48
Ddx54Q8K4L0 Gmeb1-202ENSMUST00000105964 1925 ntAPPRIS P1 TSL 1 (best) BASIC30.54■■■□□ 2.48
Ddx54Q8K4L0 Arhgap39-204ENSMUST00000176219 542 ntTSL 5 BASIC30.54■■■□□ 2.48
Ddx54Q8K4L0 Hecw2-202ENSMUST00000097741 1132 ntTSL 1 (best) BASIC30.54■■■□□ 2.48
Ddx54Q8K4L0 Brsk2-203ENSMUST00000078200 2363 ntAPPRIS P4 TSL 1 (best) BASIC30.54■■■□□ 2.48
Ddx54Q8K4L0 Adprhl2-201ENSMUST00000102617 1672 ntAPPRIS P1 TSL 1 (best) BASIC30.53■■■□□ 2.48
Ddx54Q8K4L0 Vegfb-201ENSMUST00000025914 1281 ntAPPRIS P3 TSL 1 (best) BASIC30.53■■■□□ 2.48
Ddx54Q8K4L0 Tmem55b-209ENSMUST00000162957 1465 ntTSL 1 (best) BASIC30.52■■■□□ 2.48
Ddx54Q8K4L0 Ech1-201ENSMUST00000066264 1267 ntAPPRIS P1 TSL 1 (best) BASIC30.52■■■□□ 2.48
Ddx54Q8K4L0 4930527J03Rik-201ENSMUST00000094270 543 ntBASIC30.52■■■□□ 2.48
Ddx54Q8K4L0 Phf23-205ENSMUST00000135814 2214 ntTSL 1 (best) BASIC30.52■■■□□ 2.48
Ddx54Q8K4L0 H3f3a-207ENSMUST00000162814 724 ntAPPRIS P2 TSL 3 BASIC30.51■■■□□ 2.47
Ddx54Q8K4L0 Etf1-202ENSMUST00000180351 108 ntBASIC30.51■■■□□ 2.47
Ddx54Q8K4L0 Mpnd-208ENSMUST00000159996 1444 ntAPPRIS ALT2 TSL 5 BASIC30.5■■■□□ 2.47
Ddx54Q8K4L0 Rundc3b-202ENSMUST00000115378 1891 ntAPPRIS ALT2 TSL 5 BASIC30.49■■■□□ 2.47
Ddx54Q8K4L0 Ndfip1-201ENSMUST00000025293 930 ntAPPRIS P1 TSL 1 (best) BASIC30.49■■■□□ 2.47
Ddx54Q8K4L0 Usf1-210ENSMUST00000167546 1822 ntAPPRIS P1 TSL 5 BASIC30.49■■■□□ 2.47
Ddx54Q8K4L0 Copz2-201ENSMUST00000018816 930 ntAPPRIS P1 TSL 1 (best) BASIC30.48■■■□□ 2.47
Ddx54Q8K4L0 1700065D16Rik-202ENSMUST00000188975 506 ntTSL 3 BASIC30.48■■■□□ 2.47
Ddx54Q8K4L0 Gm21989-201ENSMUST00000174530 1609 ntTSL 1 (best) BASIC30.47■■■□□ 2.47
Ddx54Q8K4L0 Sac3d1-201ENSMUST00000113533 1374 ntAPPRIS P1 TSL 1 (best) BASIC30.47■■■□□ 2.47
Ddx54Q8K4L0 Gm14121-201ENSMUST00000121441 1380 ntBASIC30.47■■■□□ 2.47
Retrieved 100 of 76,532 protein–RNA pairs in 78.5 ms