Protein–RNA interactions for Protein: Q8IX30

SCUBE3, Signal peptide, CUB and EGF-like domain-containing protein 3, humanhuman

Predictions only

Length 993 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCUBE3Q8IX30 TXNRD2-205ENST00000400525 1874 ntTSL 5 BASIC26.3■■□□□ 1.8
SCUBE3Q8IX30 MRPL4-201ENST00000253099 1455 ntAPPRIS P2 TSL 1 (best) BASIC26.3■■□□□ 1.8
SCUBE3Q8IX30 APLP1-201ENST00000221891 2495 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
SCUBE3Q8IX30 SOWAHD-201ENST00000343905 1552 ntAPPRIS P1 BASIC26.29■■□□□ 1.8
SCUBE3Q8IX30 DHRS13-203ENST00000426464 1569 ntTSL 2 BASIC26.29■■□□□ 1.8
SCUBE3Q8IX30 ANKRD9-205ENST00000560748 1413 ntAPPRIS P1 TSL 2 BASIC26.29■■□□□ 1.8
SCUBE3Q8IX30 ARPC2-202ENST00000315717 1505 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
SCUBE3Q8IX30 ARPC2-201ENST00000295685 1605 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
SCUBE3Q8IX30 SAE1-209ENST00000598840 1831 ntTSL 5 BASIC26.28■■□□□ 1.8
SCUBE3Q8IX30 EMID1-202ENST00000404755 2049 ntTSL 5 BASIC26.27■■□□□ 1.8
SCUBE3Q8IX30 PSMG1-201ENST00000331573 2154 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
SCUBE3Q8IX30 CARM1-202ENST00000344150 2722 ntAPPRIS ALT2 TSL 5 BASIC26.27■■□□□ 1.8
SCUBE3Q8IX30 VEGFA-202ENST00000324450 954 ntTSL 1 (best) BASIC26.27■■□□□ 1.8
SCUBE3Q8IX30 VEGFA-203ENST00000372055 1286 ntTSL 1 (best) BASIC26.27■■□□□ 1.8
SCUBE3Q8IX30 VEGFA-213ENST00000482630 1146 ntTSL 1 (best) BASIC26.27■■□□□ 1.8
SCUBE3Q8IX30 VEGFA-227ENST00000615393 984 ntTSL 1 (best) BASIC26.27■■□□□ 1.8
SCUBE3Q8IX30 VEGFA-228ENST00000617771 1116 ntTSL 1 (best) BASIC26.27■■□□□ 1.8
SCUBE3Q8IX30 VEGFA-229ENST00000621747 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC26.27■■□□□ 1.8
SCUBE3Q8IX30 VEGFA-230ENST00000640482 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC26.27■■□□□ 1.8
SCUBE3Q8IX30 VEGFA-232ENST00000640653 1170 ntAPPRIS ALT2 TSL 1 (best) BASIC26.27■■□□□ 1.8
SCUBE3Q8IX30 AC078883.1-202ENST00000450443 1397 ntTSL 3 BASIC26.27■■□□□ 1.8
SCUBE3Q8IX30 C14orf80-205ENST00000392523 1845 ntAPPRIS ALT2 TSL 1 (best) BASIC26.27■■□□□ 1.8
SCUBE3Q8IX30 AC009690.3-201ENST00000569547 1902 ntAPPRIS P1 TSL 2 BASIC26.27■■□□□ 1.8
SCUBE3Q8IX30 C8orf58-202ENST00000409586 2021 ntAPPRIS ALT2 TSL 2 BASIC26.27■■□□□ 1.8
SCUBE3Q8IX30 RFFL-206ENST00000447669 2030 ntAPPRIS P1 TSL 5 BASIC26.27■■□□□ 1.8
SCUBE3Q8IX30 RTN2-202ENST00000344680 2063 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
SCUBE3Q8IX30 SHF-208ENST00000560734 1731 ntTSL 3 BASIC26.26■■□□□ 1.79
SCUBE3Q8IX30 GAL3ST3-203ENST00000527878 1599 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
SCUBE3Q8IX30 ATOH7-201ENST00000373673 1480 ntAPPRIS P1 BASIC26.26■■□□□ 1.79
SCUBE3Q8IX30 SLC25A23-203ENST00000334510 1424 ntTSL 1 (best) BASIC26.26■■□□□ 1.79
SCUBE3Q8IX30 AC010907.1-201ENST00000441632 807 ntTSL 3 BASIC26.26■■□□□ 1.79
SCUBE3Q8IX30 ACAA1-220ENST00000627515 1862 ntTSL 5 BASIC26.25■■□□□ 1.79
SCUBE3Q8IX30 TBX1-201ENST00000329705 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC26.25■■□□□ 1.79
SCUBE3Q8IX30 UCK1-204ENST00000372215 2167 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
SCUBE3Q8IX30 FAM168B-201ENST00000389915 944 ntAPPRIS P1 TSL 3 BASIC26.25■■□□□ 1.79
SCUBE3Q8IX30 CMPK2-203ENST00000458098 1224 ntTSL 1 (best) BASIC26.25■■□□□ 1.79
SCUBE3Q8IX30 AGAP1-202ENST00000336665 5427 ntAPPRIS P3 TSL 1 (best) BASIC26.25■■□□□ 1.79
SCUBE3Q8IX30 ANKRD53-203ENST00000441349 1797 ntTSL 5 BASIC26.25■■□□□ 1.79
SCUBE3Q8IX30 U2AF1-201ENST00000291552 962 ntAPPRIS P3 TSL 1 (best) BASIC26.24■■□□□ 1.79
SCUBE3Q8IX30 CENPV-201ENST00000299736 1165 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
SCUBE3Q8IX30 CRNDE-206ENST00000559432 587 ntTSL 3 BASIC26.24■■□□□ 1.79
SCUBE3Q8IX30 U2AF1L5-202ENST00000619610 813 ntAPPRIS ALT2 TSL 1 (best) BASIC26.24■■□□□ 1.79
SCUBE3Q8IX30 TCFL5-201ENST00000217162 2453 ntAPPRIS ALT2 TSL 1 (best) BASIC26.23■■□□□ 1.79
SCUBE3Q8IX30 TCFL5-202ENST00000335351 2456 ntAPPRIS P2 TSL 1 (best) BASIC26.23■■□□□ 1.79
SCUBE3Q8IX30 LSM7-201ENST00000252622 529 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
SCUBE3Q8IX30 RBPMS-209ENST00000520161 842 ntTSL 2 BASIC26.23■■□□□ 1.79
SCUBE3Q8IX30 MXRA7-202ENST00000375036 1950 ntAPPRIS ALT2 TSL 2 BASIC26.23■■□□□ 1.79
SCUBE3Q8IX30 BBC3-204ENST00000449228 1827 ntTSL 1 (best) BASIC26.23■■□□□ 1.79
SCUBE3Q8IX30 C9orf40-201ENST00000376854 2327 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
SCUBE3Q8IX30 HDGFL1-201ENST00000510882 2174 ntAPPRIS P1 BASIC26.22■■□□□ 1.79
SCUBE3Q8IX30 CAPNS1-204ENST00000587718 1558 ntAPPRIS ALT2 TSL 1 (best) BASIC26.22■■□□□ 1.79
SCUBE3Q8IX30 BAX-202ENST00000345358 793 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
SCUBE3Q8IX30 LINC01918-201ENST00000436841 797 ntTSL 2 BASIC26.22■■□□□ 1.79
SCUBE3Q8IX30 GRPEL2-204ENST00000513661 546 ntTSL 2 BASIC26.22■■□□□ 1.79
SCUBE3Q8IX30 CTSA-203ENST00000372459 1972 ntTSL 1 (best) BASIC26.22■■□□□ 1.79
SCUBE3Q8IX30 SLC25A6-201ENST00000381401 2062 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
SCUBE3Q8IX30 KIF13A-207ENST00000502704 1330 ntTSL 1 (best) BASIC26.21■■□□□ 1.79
SCUBE3Q8IX30 PWWP2B-201ENST00000305233 2651 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
SCUBE3Q8IX30 BANF1-208ENST00000533166 1135 ntAPPRIS P1 TSL 2 BASIC26.21■■□□□ 1.79
SCUBE3Q8IX30 RPARP-AS1-205ENST00000596045 431 ntTSL 3 BASIC26.21■■□□□ 1.79
SCUBE3Q8IX30 CAPNS1-215ENST00000628018 1509 ntAPPRIS ALT2 TSL 5 BASIC26.2■■□□□ 1.79
SCUBE3Q8IX30 KCTD15-206ENST00000588881 1211 ntAPPRIS P1 TSL 2 BASIC26.2■■□□□ 1.78
SCUBE3Q8IX30 R3HDM4-208ENST00000626716 138 ntTSL 5 BASIC26.2■■□□□ 1.78
SCUBE3Q8IX30 DHRS13-202ENST00000394901 2037 ntTSL 1 (best) BASIC26.2■■□□□ 1.78
SCUBE3Q8IX30 TNIP2-201ENST00000315423 1974 ntAPPRIS P3 TSL 1 (best) BASIC26.19■■□□□ 1.78
SCUBE3Q8IX30 TAF10-201ENST00000299424 1215 ntAPPRIS P1 TSL 1 (best) BASIC26.19■■□□□ 1.78
SCUBE3Q8IX30 HSD17B12-202ENST00000395700 994 ntTSL 1 (best) BASIC26.19■■□□□ 1.78
SCUBE3Q8IX30 AC016595.1-201ENST00000559410 383 ntTSL 3 BASIC26.19■■□□□ 1.78
SCUBE3Q8IX30 SRP68-213ENST00000629930 165 ntTSL 5 BASIC26.19■■□□□ 1.78
SCUBE3Q8IX30 PLSCR3-214ENST00000619711 2066 ntTSL 5 BASIC26.19■■□□□ 1.78
SCUBE3Q8IX30 IHH-201ENST00000295731 2023 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
SCUBE3Q8IX30 MEN1-204ENST00000377313 1871 ntAPPRIS P3 TSL 2 BASIC26.18■■□□□ 1.78
SCUBE3Q8IX30 NDEL1-202ENST00000380025 2181 ntTSL 5 BASIC26.18■■□□□ 1.78
SCUBE3Q8IX30 KDM4C-203ENST00000401787 1406 ntTSL 1 (best) BASIC26.18■■□□□ 1.78
SCUBE3Q8IX30 WDR86-204ENST00000477459 1428 ntTSL 2 BASIC26.18■■□□□ 1.78
SCUBE3Q8IX30 GNPTG-204ENST00000527137 386 ntTSL 2 BASIC26.18■■□□□ 1.78
SCUBE3Q8IX30 MED25-210ENST00000612854 801 ntTSL 5 BASIC26.18■■□□□ 1.78
SCUBE3Q8IX30 MED25-213ENST00000620467 1293 ntTSL 1 (best) BASIC26.18■■□□□ 1.78
SCUBE3Q8IX30 MED25-214ENST00000622402 642 ntTSL 5 BASIC26.18■■□□□ 1.78
SCUBE3Q8IX30 CIB2-202ENST00000539011 1511 ntTSL 1 (best) BASIC26.18■■□□□ 1.78
SCUBE3Q8IX30 EMC10-206ENST00000598585 1610 ntAPPRIS ALT2 TSL 5 BASIC26.17■■□□□ 1.78
SCUBE3Q8IX30 WHAMMP3-201ENST00000611636 1609 ntBASIC26.17■■□□□ 1.78
SCUBE3Q8IX30 YBX2-201ENST00000007699 1590 ntAPPRIS P1 TSL 1 (best) BASIC26.17■■□□□ 1.78
SCUBE3Q8IX30 KCNG2-201ENST00000316249 1401 ntAPPRIS P1 TSL 1 (best) BASIC26.17■■□□□ 1.78
SCUBE3Q8IX30 PKIG-207ENST00000372894 1191 ntAPPRIS P1 TSL 1 (best) BASIC26.17■■□□□ 1.78
SCUBE3Q8IX30 TPT1-202ENST00000379055 948 ntTSL 2 BASIC26.17■■□□□ 1.78
SCUBE3Q8IX30 HOXD-AS2-201ENST00000426965 927 ntTSL 1 (best) BASIC26.17■■□□□ 1.78
SCUBE3Q8IX30 CPTP-201ENST00000343938 2190 ntAPPRIS P1 TSL 2 BASIC26.16■■□□□ 1.78
SCUBE3Q8IX30 ZBTB25-202ENST00000555220 1440 ntTSL 1 (best) BASIC26.15■■□□□ 1.78
SCUBE3Q8IX30 RAB3IL1-202ENST00000394836 2284 ntAPPRIS P1 TSL 1 (best) BASIC26.15■■□□□ 1.78
SCUBE3Q8IX30 MDFIC-203ENST00000423503 474 ntTSL 1 (best) BASIC26.15■■□□□ 1.78
SCUBE3Q8IX30 CLDND1-226ENST00000513287 999 ntAPPRIS P1 TSL 2 BASIC26.15■■□□□ 1.78
SCUBE3Q8IX30 VSIG8-201ENST00000368100 1818 ntAPPRIS P1 TSL 1 (best) BASIC26.15■■□□□ 1.78
SCUBE3Q8IX30 AL449106.1-201ENST00000608517 1980 ntBASIC26.15■■□□□ 1.78
SCUBE3Q8IX30 PIK3R2-207ENST00000617130 2187 ntAPPRIS P1 TSL 1 (best) BASIC26.14■■□□□ 1.78
SCUBE3Q8IX30 BCL7B-202ENST00000411832 1458 ntTSL 2 BASIC26.14■■□□□ 1.78
SCUBE3Q8IX30 AL359258.2-201ENST00000564063 1566 ntBASIC26.13■■□□□ 1.77
SCUBE3Q8IX30 KLHL21-203ENST00000463043 667 ntTSL 5 BASIC26.13■■□□□ 1.77
SCUBE3Q8IX30 CLK2-203ENST00000368361 2166 ntAPPRIS ALT1 TSL 1 (best) BASIC26.13■■□□□ 1.77
SCUBE3Q8IX30 CBWD5-202ENST00000377384 1347 ntTSL 1 (best) BASIC26.13■■□□□ 1.77
Retrieved 100 of 98,524 protein–RNA pairs in 105.7 ms