Protein–RNA interactions for Protein: Q8CFK2

Brf1, Transcription factor IIIB 90 kDa subunit, mousemouse

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Brf1Q8CFK2 Dbp-204ENSMUST00000211513 1156 ntTSL 5 BASIC27.54■■■□□ 2
Brf1Q8CFK2 Tmem9b-201ENSMUST00000033333 1703 ntAPPRIS P2 TSL 1 (best) BASIC27.54■■■□□ 2
Brf1Q8CFK2 Kctd2-201ENSMUST00000103035 1764 ntAPPRIS P1 TSL 1 (best) BASIC27.53■■■□□ 2
Brf1Q8CFK2 Kctd6-201ENSMUST00000022272 1650 ntAPPRIS P1 TSL 1 (best) BASIC27.53■■■□□ 2
Brf1Q8CFK2 Rab26-202ENSMUST00000061764 1291 ntTSL 2 BASIC27.53■■■□□ 2
Brf1Q8CFK2 Mad2l2-202ENSMUST00000084129 1162 ntAPPRIS P1 TSL 1 (best) BASIC27.53■■■□□ 2
Brf1Q8CFK2 Efhd1os-201ENSMUST00000138844 332 ntTSL 3 BASIC27.52■■■□□ 2
Brf1Q8CFK2 AC122317.2-201ENSMUST00000218708 1248 ntBASIC27.52■■■□□ 2
Brf1Q8CFK2 Dbndd2-202ENSMUST00000069385 1658 ntAPPRIS P1 TSL 1 (best) BASIC27.52■■■□□ 2
Brf1Q8CFK2 Irak1-207ENSMUST00000114360 2441 ntAPPRIS ALT2 TSL 1 (best) BASIC27.51■■■□□ 2
Brf1Q8CFK2 Hoxc8-201ENSMUST00000001703 1868 ntAPPRIS P1 TSL 1 (best) BASIC27.51■■□□□ 1.99
Brf1Q8CFK2 Pkd1-207ENSMUST00000228550 1050 ntBASIC27.51■■□□□ 1.99
Brf1Q8CFK2 Gm20208-202ENSMUST00000219905 1528 ntTSL 1 (best) BASIC27.51■■□□□ 1.99
Brf1Q8CFK2 Nelfe-202ENSMUST00000165953 1381 ntAPPRIS P1 TSL 1 (best) BASIC27.49■■□□□ 1.99
Brf1Q8CFK2 A330041J22Rik-201ENSMUST00000150367 1825 ntTSL 1 (best) BASIC27.49■■□□□ 1.99
Brf1Q8CFK2 Znrf1-207ENSMUST00000173506 1238 ntAPPRIS P1 TSL 2 BASIC27.49■■□□□ 1.99
Brf1Q8CFK2 Asf1a-201ENSMUST00000020004 2201 ntAPPRIS P1 TSL 1 (best) BASIC27.49■■□□□ 1.99
Brf1Q8CFK2 Foxa2-202ENSMUST00000109964 2070 ntAPPRIS ALT2 TSL 1 (best) BASIC27.48■■□□□ 1.99
Brf1Q8CFK2 Foxn3-209ENSMUST00000177451 2882 ntAPPRIS P1 TSL 1 (best) BASIC27.48■■□□□ 1.99
Brf1Q8CFK2 Kcnk2-205ENSMUST00000192723 1642 ntAPPRIS ALT1 TSL 1 (best) BASIC27.47■■□□□ 1.99
Brf1Q8CFK2 Cdkn2c-202ENSMUST00000097921 2471 ntAPPRIS P1 TSL 1 (best) BASIC27.47■■□□□ 1.99
Brf1Q8CFK2 Coro1b-201ENSMUST00000008893 1888 ntAPPRIS P1 TSL 1 (best) BASIC27.47■■□□□ 1.99
Brf1Q8CFK2 Stambp-207ENSMUST00000206592 2152 ntAPPRIS P1 TSL 1 (best) BASIC27.46■■□□□ 1.99
Brf1Q8CFK2 Rragc-201ENSMUST00000030399 2593 ntAPPRIS P1 TSL 1 (best) BASIC27.46■■□□□ 1.99
Brf1Q8CFK2 Ankrd49-205ENSMUST00000216037 1037 ntAPPRIS P1 TSL 2 BASIC27.46■■□□□ 1.99
Brf1Q8CFK2 Rnf39-201ENSMUST00000040498 1579 ntAPPRIS P1 TSL 1 (best) BASIC27.46■■□□□ 1.99
Brf1Q8CFK2 Mast2-203ENSMUST00000106485 5705 ntAPPRIS ALT2 TSL 1 (best) BASIC27.46■■□□□ 1.99
Brf1Q8CFK2 Mast2-204ENSMUST00000106486 5723 ntAPPRIS P4 TSL 1 (best) BASIC27.46■■□□□ 1.99
Brf1Q8CFK2 Paqr6-203ENSMUST00000147948 837 ntTSL 2 BASIC27.45■■□□□ 1.98
Brf1Q8CFK2 2510046G10Rik-202ENSMUST00000187458 1052 ntBASIC27.45■■□□□ 1.98
Brf1Q8CFK2 Ube2h-201ENSMUST00000094543 975 ntTSL 1 (best) BASIC27.45■■□□□ 1.98
Brf1Q8CFK2 Olfm2-203ENSMUST00000215999 1895 ntAPPRIS ALT2 TSL 3 BASIC27.44■■□□□ 1.98
Brf1Q8CFK2 Kctd15-202ENSMUST00000108069 2407 ntAPPRIS P1 TSL 5 BASIC27.43■■□□□ 1.98
Brf1Q8CFK2 Gm20512-201ENSMUST00000172483 618 ntTSL 1 (best) BASIC27.43■■□□□ 1.98
Brf1Q8CFK2 4930597O21Rik-201ENSMUST00000065878 984 ntTSL 1 (best) BASIC27.43■■□□□ 1.98
Brf1Q8CFK2 A830010M20Rik-207ENSMUST00000162298 1408 ntTSL 5 BASIC27.42■■□□□ 1.98
Brf1Q8CFK2 Asf1a-205ENSMUST00000219282 1150 ntTSL 5 BASIC27.42■■□□□ 1.98
Brf1Q8CFK2 Ltb4r1-201ENSMUST00000057569 1394 ntAPPRIS P1 TSL 1 (best) BASIC27.42■■□□□ 1.98
Brf1Q8CFK2 Nisch-222ENSMUST00000172142 2780 ntAPPRIS ALT2 TSL 1 (best) BASIC27.41■■□□□ 1.98
Brf1Q8CFK2 1110008P14Rik-201ENSMUST00000048792 680 ntAPPRIS P1 TSL 1 (best) BASIC27.41■■□□□ 1.98
Brf1Q8CFK2 Shb-201ENSMUST00000061986 2244 ntAPPRIS P1 TSL 1 (best) BASIC27.41■■□□□ 1.98
Brf1Q8CFK2 Mypop-201ENSMUST00000059331 2173 ntAPPRIS P1 TSL 5 BASIC27.41■■□□□ 1.98
Brf1Q8CFK2 Slc16a11-211ENSMUST00000171032 1754 ntAPPRIS P1 TSL 5 BASIC27.4■■□□□ 1.98
Brf1Q8CFK2 AC153911.1-201ENSMUST00000220378 758 ntBASIC27.4■■□□□ 1.98
Brf1Q8CFK2 Homer3-201ENSMUST00000003669 2323 ntAPPRIS ALT1 TSL 1 (best) BASIC27.4■■□□□ 1.98
Brf1Q8CFK2 Zfp91-201ENSMUST00000038627 5531 ntAPPRIS P1 TSL 1 (best) BASIC27.4■■□□□ 1.98
Brf1Q8CFK2 Rarres1-201ENSMUST00000054825 1325 ntAPPRIS P1 TSL 1 (best) BASIC27.4■■□□□ 1.98
Brf1Q8CFK2 Syndig1l-201ENSMUST00000095550 2524 ntAPPRIS P1 TSL 1 (best) BASIC27.39■■□□□ 1.98
Brf1Q8CFK2 St3gal2-202ENSMUST00000117534 2177 ntTSL 1 (best) BASIC27.39■■□□□ 1.98
Brf1Q8CFK2 Fam120a-201ENSMUST00000060805 5105 ntAPPRIS P1 TSL 1 (best) BASIC27.39■■□□□ 1.98
Brf1Q8CFK2 Trappc6b-201ENSMUST00000021380 1255 ntAPPRIS P1 TSL 1 (best) BASIC27.39■■□□□ 1.98
Brf1Q8CFK2 Fads2-201ENSMUST00000025567 1508 ntAPPRIS P1 TSL 1 (best) BASIC27.38■■□□□ 1.97
Brf1Q8CFK2 Gm42699-201ENSMUST00000198104 1657 ntBASIC27.38■■□□□ 1.97
Brf1Q8CFK2 Sntb1-202ENSMUST00000110200 1225 ntTSL 1 (best) BASIC27.38■■□□□ 1.97
Brf1Q8CFK2 Dcun1d5-201ENSMUST00000034499 1122 ntTSL 1 (best) BASIC27.38■■□□□ 1.97
Brf1Q8CFK2 Tmem192-202ENSMUST00000079896 916 ntTSL 1 (best) BASIC27.38■■□□□ 1.97
Brf1Q8CFK2 Pdpk1-203ENSMUST00000115407 1730 ntTSL 5 BASIC27.38■■□□□ 1.97
Brf1Q8CFK2 Gorasp2-205ENSMUST00000133432 1941 ntAPPRIS ALT2 TSL 1 (best) BASIC27.37■■□□□ 1.97
Brf1Q8CFK2 Scrt2-201ENSMUST00000064061 3395 ntAPPRIS P1 TSL 5 BASIC27.37■■□□□ 1.97
Brf1Q8CFK2 Vps37b-201ENSMUST00000040967 2522 ntAPPRIS P1 TSL 1 (best) BASIC27.37■■□□□ 1.97
Brf1Q8CFK2 Ddx43-201ENSMUST00000113367 2207 ntAPPRIS P1 TSL 5 BASIC27.37■■□□□ 1.97
Brf1Q8CFK2 H1f0-201ENSMUST00000180086 2287 ntAPPRIS P1 BASIC27.37■■□□□ 1.97
Brf1Q8CFK2 Hook1-202ENSMUST00000107083 1506 ntTSL 1 (best) BASIC27.36■■□□□ 1.97
Brf1Q8CFK2 Sh3d21-202ENSMUST00000097891 2384 ntAPPRIS P1 TSL 1 (best) BASIC27.36■■□□□ 1.97
Brf1Q8CFK2 Hgh1-201ENSMUST00000023213 1959 ntAPPRIS P1 TSL 1 (best) BASIC27.36■■□□□ 1.97
Brf1Q8CFK2 Hoxb3-202ENSMUST00000093944 3190 ntAPPRIS P1 TSL 5 BASIC27.35■■□□□ 1.97
Brf1Q8CFK2 Gm5784-202ENSMUST00000220896 2016 ntTSL 1 (best) BASIC27.35■■□□□ 1.97
Brf1Q8CFK2 Terc-201ENSMUST00000082862 423 ntBASIC27.35■■□□□ 1.97
Brf1Q8CFK2 Hoxb3-201ENSMUST00000055334 1890 ntAPPRIS P1 TSL 1 (best) BASIC27.35■■□□□ 1.97
Brf1Q8CFK2 Crlf2-201ENSMUST00000044579 1323 ntAPPRIS P3 TSL 1 (best) BASIC27.35■■□□□ 1.97
Brf1Q8CFK2 Ccdc142-201ENSMUST00000101254 2317 ntAPPRIS P1 TSL 5 BASIC27.34■■□□□ 1.97
Brf1Q8CFK2 Slc22a17-201ENSMUST00000050772 2290 ntTSL 1 (best) BASIC27.34■■□□□ 1.97
Brf1Q8CFK2 Gm16286-202ENSMUST00000125127 1683 ntAPPRIS P1 TSL 1 (best) BASIC27.33■■□□□ 1.97
Brf1Q8CFK2 Ube2g2-204ENSMUST00000174510 2031 ntAPPRIS P1 TSL 1 (best) BASIC27.33■■□□□ 1.97
Brf1Q8CFK2 Smagp-202ENSMUST00000172334 952 ntAPPRIS P1 TSL 2 BASIC27.33■■□□□ 1.97
Brf1Q8CFK2 Ube2k-203ENSMUST00000201266 1449 ntTSL 5 BASIC27.33■■□□□ 1.96
Brf1Q8CFK2 Mlycd-201ENSMUST00000098367 2128 ntAPPRIS P1 TSL 1 (best) BASIC27.32■■□□□ 1.96
Brf1Q8CFK2 Gm15918-201ENSMUST00000137259 689 ntTSL 3 BASIC27.32■■□□□ 1.96
Brf1Q8CFK2 Ndufs3-201ENSMUST00000005647 1046 ntAPPRIS P1 TSL 1 (best) BASIC27.32■■□□□ 1.96
Brf1Q8CFK2 Kcnj6-201ENSMUST00000095873 1773 ntTSL 1 (best) BASIC27.32■■□□□ 1.96
Brf1Q8CFK2 Hecw2-202ENSMUST00000097741 1132 ntTSL 1 (best) BASIC27.31■■□□□ 1.96
Brf1Q8CFK2 Porcn-201ENSMUST00000077595 1872 ntAPPRIS P4 TSL 1 (best) BASIC27.31■■□□□ 1.96
Brf1Q8CFK2 Porcn-204ENSMUST00000089403 1854 ntAPPRIS ALT1 TSL 1 (best) BASIC27.31■■□□□ 1.96
Brf1Q8CFK2 Thap8-202ENSMUST00000108187 1184 ntAPPRIS P5 TSL 2 BASIC27.3■■□□□ 1.96
Brf1Q8CFK2 Scarna2-201ENSMUST00000157560 414 ntBASIC27.3■■□□□ 1.96
Brf1Q8CFK2 Fbl-201ENSMUST00000042405 1197 ntAPPRIS P1 TSL 1 (best) BASIC27.3■■□□□ 1.96
Brf1Q8CFK2 Prrx2-201ENSMUST00000041659 1441 ntAPPRIS P2 TSL 1 (best) BASIC27.3■■□□□ 1.96
Brf1Q8CFK2 Srcap-210ENSMUST00000188124 2048 ntTSL 1 (best) BASIC27.29■■□□□ 1.96
Brf1Q8CFK2 Cd320-201ENSMUST00000002379 2209 ntAPPRIS P3 TSL 1 (best) BASIC27.29■■□□□ 1.96
Brf1Q8CFK2 Hacd1-202ENSMUST00000091429 871 ntTSL 1 (best) BASIC27.29■■□□□ 1.96
Brf1Q8CFK2 Gm9910-201ENSMUST00000195385 1550 ntBASIC27.29■■□□□ 1.96
Brf1Q8CFK2 Scn1b-201ENSMUST00000098548 1573 ntAPPRIS P1 TSL 1 (best) BASIC27.29■■□□□ 1.96
Brf1Q8CFK2 Gm21989-201ENSMUST00000174530 1609 ntTSL 1 (best) BASIC27.29■■□□□ 1.96
Brf1Q8CFK2 Efhd2-201ENSMUST00000036854 2381 ntAPPRIS P1 TSL 1 (best) BASIC27.29■■□□□ 1.96
Brf1Q8CFK2 Olfm1-201ENSMUST00000028177 2757 ntAPPRIS P1 TSL 1 (best) BASIC27.29■■□□□ 1.96
Brf1Q8CFK2 Pdcd4-201ENSMUST00000025931 2330 ntAPPRIS P1 TSL 1 (best) BASIC27.28■■□□□ 1.96
Brf1Q8CFK2 A530095I07Rik-201ENSMUST00000070942 847 ntTSL 1 (best) BASIC27.28■■□□□ 1.96
Brf1Q8CFK2 Ubp1-204ENSMUST00000214095 2320 ntAPPRIS ALT1 TSL 1 (best) BASIC27.28■■□□□ 1.96
Brf1Q8CFK2 Kctd5-201ENSMUST00000017090 2443 ntAPPRIS P1 TSL 1 (best) BASIC27.27■■□□□ 1.96
Brf1Q8CFK2 Dbp-201ENSMUST00000080885 1837 ntAPPRIS P1 TSL 1 (best) BASIC27.27■■□□□ 1.96
Retrieved 100 of 76,532 protein–RNA pairs in 180.3 ms