Protein–RNA interactions for Protein: Q6UVK1

CSPG4, Chondroitin sulfate proteoglycan 4, humanhuman

Predictions only

Length 2,322 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4Q6UVK1 NKIRAS2-208ENST00000462043 585 ntTSL 4 BASIC20.8■□□□□ 0.92
CSPG4Q6UVK1 MIR1-1HG-202ENST00000624914 1220 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
CSPG4Q6UVK1 AC008105.3-203ENST00000591365 2238 ntTSL 2 BASIC20.8■□□□□ 0.92
CSPG4Q6UVK1 KCNG2-201ENST00000316249 1401 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
CSPG4Q6UVK1 HOXB3-202ENST00000460160 1525 ntTSL 5 BASIC20.8■□□□□ 0.92
CSPG4Q6UVK1 SLC16A8-201ENST00000320521 1878 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
CSPG4Q6UVK1 NAXE-203ENST00000368235 1125 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CSPG4Q6UVK1 MDK-203ENST00000395566 828 ntAPPRIS P2 TSL 1 (best) BASIC20.79■□□□□ 0.92
CSPG4Q6UVK1 GSR-205ENST00000541648 1410 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
CSPG4Q6UVK1 FOXD3-201ENST00000371116 2086 ntAPPRIS P1 BASIC20.79■□□□□ 0.92
CSPG4Q6UVK1 YIF1A-201ENST00000359461 943 ntTSL 2 BASIC20.79■□□□□ 0.92
CSPG4Q6UVK1 YIF1A-203ENST00000376901 1124 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CSPG4Q6UVK1 AC139795.1-203ENST00000515045 853 ntTSL 2 BASIC20.79■□□□□ 0.92
CSPG4Q6UVK1 PTRH1-208ENST00000543175 814 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CSPG4Q6UVK1 THA1P-201ENST00000590384 1145 ntBASIC20.79■□□□□ 0.92
CSPG4Q6UVK1 ATPAF1-202ENST00000371937 1827 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CSPG4Q6UVK1 AC104002.3-202ENST00000557170 1100 ntTSL 3 BASIC20.78■□□□□ 0.92
CSPG4Q6UVK1 BEX3-202ENST00000372634 753 ntTSL 2 BASIC20.78■□□□□ 0.92
CSPG4Q6UVK1 AC025884.2-201ENST00000553429 711 ntBASIC20.78■□□□□ 0.92
CSPG4Q6UVK1 MRPL4-201ENST00000253099 1455 ntAPPRIS P2 TSL 1 (best) BASIC20.78■□□□□ 0.92
CSPG4Q6UVK1 CCND3-205ENST00000415497 1843 ntTSL 2 BASIC20.78■□□□□ 0.92
CSPG4Q6UVK1 SH3GL3-202ENST00000427482 1806 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CSPG4Q6UVK1 EVA1B-201ENST00000270824 1054 ntAPPRIS P1 TSL 2 BASIC20.77■□□□□ 0.92
CSPG4Q6UVK1 AC093536.1-201ENST00000569153 554 ntBASIC20.77■□□□□ 0.92
CSPG4Q6UVK1 MAZ-205ENST00000562337 1574 ntTSL 3 BASIC20.77■□□□□ 0.92
CSPG4Q6UVK1 PPP4C-201ENST00000279387 1407 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
CSPG4Q6UVK1 IGFBP6-201ENST00000301464 1169 ntAPPRIS P2 TSL 1 (best) BASIC20.77■□□□□ 0.92
CSPG4Q6UVK1 CENPX-202ENST00000392359 805 ntAPPRIS P1 TSL 2 BASIC20.77■□□□□ 0.92
CSPG4Q6UVK1 H2AFY-204ENST00000423969 924 ntTSL 2 BASIC20.77■□□□□ 0.92
CSPG4Q6UVK1 SMPD5-203ENST00000639008 1464 ntBASIC20.77■□□□□ 0.92
CSPG4Q6UVK1 SLC16A11-201ENST00000308009 1803 ntAPPRIS P2 TSL 1 (best) BASIC20.77■□□□□ 0.91
CSPG4Q6UVK1 TMEM150A-202ENST00000334462 1518 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CSPG4Q6UVK1 SLC25A23-203ENST00000334510 1424 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
CSPG4Q6UVK1 MORF4L1-203ENST00000426013 1880 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CSPG4Q6UVK1 AL359258.2-201ENST00000564063 1566 ntBASIC20.76■□□□□ 0.91
CSPG4Q6UVK1 MEST-211ENST00000437945 1455 ntTSL 5 BASIC20.76■□□□□ 0.91
CSPG4Q6UVK1 AC074183.2-201ENST00000623112 922 ntBASIC20.76■□□□□ 0.91
CSPG4Q6UVK1 PROCA1-201ENST00000301039 1566 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
CSPG4Q6UVK1 ITPKA-201ENST00000260386 1824 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CSPG4Q6UVK1 AC092647.5-201ENST00000426595 1732 ntAPPRIS P1 TSL 5 BASIC20.76■□□□□ 0.91
CSPG4Q6UVK1 CCER2-201ENST00000571838 1057 ntAPPRIS P2 TSL 5 BASIC20.76■□□□□ 0.91
CSPG4Q6UVK1 GXYLT1-201ENST00000280876 1937 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
CSPG4Q6UVK1 SMKR1-201ENST00000462322 1035 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CSPG4Q6UVK1 AC026202.3-201ENST00000600805 1127 ntBASIC20.75■□□□□ 0.91
CSPG4Q6UVK1 TCEA1-214ENST00000640382 1234 ntTSL 5 BASIC20.75■□□□□ 0.91
CSPG4Q6UVK1 EID2-201ENST00000390658 1629 ntAPPRIS P1 BASIC20.75■□□□□ 0.91
CSPG4Q6UVK1 QDPR-202ENST00000428702 1278 ntTSL 2 BASIC20.75■□□□□ 0.91
CSPG4Q6UVK1 RHOBTB3-206ENST00000506817 1432 ntTSL 2 BASIC20.75■□□□□ 0.91
CSPG4Q6UVK1 MBOAT7-202ENST00000338624 2076 ntTSL 2 BASIC20.74■□□□□ 0.91
CSPG4Q6UVK1 CDKN2B-202ENST00000380142 859 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
CSPG4Q6UVK1 BHLHE23-202ENST00000612929 1109 ntBASIC20.74■□□□□ 0.91
CSPG4Q6UVK1 AC064853.4-201ENST00000641394 363 ntAPPRIS P1 BASIC20.73■□□□□ 0.91
CSPG4Q6UVK1 COQ2-201ENST00000311461 1464 ntAPPRIS ALT2 TSL 5 BASIC20.73■□□□□ 0.91
CSPG4Q6UVK1 ZNF787-203ENST00000610935 1925 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CSPG4Q6UVK1 ANGPTL6-203ENST00000589181 1579 ntTSL 5 BASIC20.73■□□□□ 0.91
CSPG4Q6UVK1 SHISA8-202ENST00000621082 1405 ntAPPRIS P2 TSL 5 BASIC20.73■□□□□ 0.91
CSPG4Q6UVK1 MKRN1-202ENST00000443720 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
CSPG4Q6UVK1 PTPA-210ENST00000414510 1153 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
CSPG4Q6UVK1 TMEM238-201ENST00000444469 1000 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
CSPG4Q6UVK1 SPCS2P3-201ENST00000500401 656 ntBASIC20.72■□□□□ 0.91
CSPG4Q6UVK1 AC103834.1-201ENST00000520383 144 ntBASIC20.72■□□□□ 0.91
CSPG4Q6UVK1 ABHD17B-202ENST00000377041 1312 ntAPPRIS P4 TSL 1 (best) BASIC20.72■□□□□ 0.91
CSPG4Q6UVK1 TXNRD2-205ENST00000400525 1874 ntTSL 5 BASIC20.72■□□□□ 0.91
CSPG4Q6UVK1 MSRB1-206ENST00000622125 1363 ntAPPRIS ALT1 TSL 5 BASIC20.72■□□□□ 0.91
CSPG4Q6UVK1 DPF1-204ENST00000416611 2341 ntTSL 5 BASIC20.72■□□□□ 0.91
CSPG4Q6UVK1 CD63-201ENST00000257857 1070 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
CSPG4Q6UVK1 AL356441.2-201ENST00000443009 864 ntBASIC20.72■□□□□ 0.91
CSPG4Q6UVK1 GLT8D1-201ENST00000266014 1849 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
CSPG4Q6UVK1 ZEB1-AS1-205ENST00000605946 382 ntTSL 5 BASIC20.71■□□□□ 0.91
CSPG4Q6UVK1 AC145124.1-201ENST00000528514 1361 ntTSL 2 BASIC20.71■□□□□ 0.91
CSPG4Q6UVK1 SLC52A2-201ENST00000329994 1896 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CSPG4Q6UVK1 PNMT-201ENST00000269582 1253 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CSPG4Q6UVK1 EPM2A-202ENST00000435470 1278 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
CSPG4Q6UVK1 AL355490.1-201ENST00000445808 805 ntTSL 3 BASIC20.7■□□□□ 0.9
CSPG4Q6UVK1 AC139795.1-202ENST00000500444 432 ntBASIC20.7■□□□□ 0.9
CSPG4Q6UVK1 ZNF302-211ENST00000509528 577 ntTSL 4 BASIC20.7■□□□□ 0.9
CSPG4Q6UVK1 PVT1_1.1-201ENST00000615125 194 ntBASIC20.7■□□□□ 0.9
CSPG4Q6UVK1 CAMK2N2-201ENST00000296238 1362 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CSPG4Q6UVK1 TTC36-201ENST00000302783 874 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CSPG4Q6UVK1 AL121987.2-201ENST00000418602 1578 ntTSL 2 BASIC20.7■□□□□ 0.9
CSPG4Q6UVK1 OR2A1-AS1-204ENST00000470435 602 ntBASIC20.7■□□□□ 0.9
CSPG4Q6UVK1 CDKN2A-214ENST00000579755 1283 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CSPG4Q6UVK1 PLEKHJ1-213ENST00000591099 1092 ntTSL 2 BASIC20.7■□□□□ 0.9
CSPG4Q6UVK1 TMEM120A-214ENST00000493111 1456 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CSPG4Q6UVK1 PTGER1-201ENST00000292513 1421 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CSPG4Q6UVK1 PSMG4-206ENST00000438998 838 ntAPPRIS P1 TSL 2 BASIC20.69■□□□□ 0.9
CSPG4Q6UVK1 C11orf91-201ENST00000379011 811 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CSPG4Q6UVK1 AC079305.3-201ENST00000455416 218 ntTSL 5 BASIC20.69■□□□□ 0.9
CSPG4Q6UVK1 FAM159A-204ENST00000517870 748 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CSPG4Q6UVK1 LDB1-202ENST00000425280 2089 ntTSL 5 BASIC20.68■□□□□ 0.9
CSPG4Q6UVK1 DNPEP-201ENST00000273075 2425 ntAPPRIS P3 TSL 1 (best) BASIC20.68■□□□□ 0.9
CSPG4Q6UVK1 FKBP1B-202ENST00000380991 1010 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
CSPG4Q6UVK1 YBX1P4-201ENST00000392794 808 ntBASIC20.68■□□□□ 0.9
CSPG4Q6UVK1 C9orf47-202ENST00000375850 859 ntAPPRIS ALT2 TSL 3 BASIC20.67■□□□□ 0.9
CSPG4Q6UVK1 PRELID2-207ENST00000511435 1894 ntAPPRIS ALT1 TSL 2 BASIC20.67■□□□□ 0.9
CSPG4Q6UVK1 FOXP1-201ENST00000318779 843 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
CSPG4Q6UVK1 HNRNPAB-202ENST00000358344 1796 ntAPPRIS P4 TSL 1 (best) BASIC20.67■□□□□ 0.9
CSPG4Q6UVK1 KDM4C-203ENST00000401787 1406 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
CSPG4Q6UVK1 EMC10-206ENST00000598585 1610 ntAPPRIS ALT2 TSL 5 BASIC20.67■□□□□ 0.9
CSPG4Q6UVK1 AC073934.1-201ENST00000490314 495 ntTSL 4 BASIC20.66■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 15.1 ms