Protein–RNA interactions for Protein: Q6PDQ2

Chd4, Chromodomain-helicase-DNA-binding protein 4, mousemouse

Known RBP Predictions only

Length 1,915 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chd4Q6PDQ2 Nudt6-201ENSMUST00000052645 1155 ntAPPRIS ALT2 TSL 1 (best) BASIC30.75■■■□□ 2.51
Chd4Q6PDQ2 Nudt6-202ENSMUST00000099130 1070 ntAPPRIS P3 TSL 1 (best) BASIC30.75■■■□□ 2.51
Chd4Q6PDQ2 St7-208ENSMUST00000115419 2194 ntTSL 1 (best) BASIC30.75■■■□□ 2.51
Chd4Q6PDQ2 Tm6sf1-201ENSMUST00000041890 2226 ntAPPRIS P1 TSL 1 (best) BASIC30.74■■■□□ 2.51
Chd4Q6PDQ2 Psip1-203ENSMUST00000107215 1898 ntTSL 1 (best) BASIC30.74■■■□□ 2.51
Chd4Q6PDQ2 Suv39h2-202ENSMUST00000060618 1831 ntTSL 1 (best) BASIC30.73■■■□□ 2.51
Chd4Q6PDQ2 Ppp1ca-201ENSMUST00000046094 1379 ntAPPRIS P1 TSL 1 (best) BASIC30.73■■■□□ 2.51
Chd4Q6PDQ2 Ybx3-202ENSMUST00000087865 1684 ntAPPRIS ALT2 TSL 1 (best) BASIC30.71■■■□□ 2.51
Chd4Q6PDQ2 Gm5067-201ENSMUST00000170449 1009 ntBASIC30.71■■■□□ 2.51
Chd4Q6PDQ2 Kctd2-201ENSMUST00000103035 1764 ntAPPRIS P1 TSL 1 (best) BASIC30.7■■■□□ 2.51
Chd4Q6PDQ2 Dleu7-201ENSMUST00000063169 1314 ntAPPRIS P1 TSL 1 (best) BASIC30.69■■■□□ 2.5
Chd4Q6PDQ2 Hpf1-204ENSMUST00000146863 531 ntTSL 2 BASIC30.69■■■□□ 2.5
Chd4Q6PDQ2 Dhrs11-201ENSMUST00000047560 1254 ntAPPRIS P1 TSL 1 (best) BASIC30.69■■■□□ 2.5
Chd4Q6PDQ2 Cited1-202ENSMUST00000101336 1090 ntAPPRIS P1 TSL 1 (best) BASIC30.68■■■□□ 2.5
Chd4Q6PDQ2 Msto1-202ENSMUST00000126245 1875 ntAPPRIS P1 TSL 1 (best) BASIC30.68■■■□□ 2.5
Chd4Q6PDQ2 Ube2j2-202ENSMUST00000103175 1309 ntAPPRIS P1 TSL 1 (best) BASIC30.68■■■□□ 2.5
Chd4Q6PDQ2 Gm5921-201ENSMUST00000075898 882 ntBASIC30.67■■■□□ 2.5
Chd4Q6PDQ2 Htatsf1-202ENSMUST00000114751 1128 ntTSL 1 (best) BASIC30.67■■■□□ 2.5
Chd4Q6PDQ2 D17Wsu92e-201ENSMUST00000075076 1470 ntTSL 1 (best) BASIC30.66■■■□□ 2.5
Chd4Q6PDQ2 Oaz2-206ENSMUST00000153700 1843 ntAPPRIS P2 TSL 5 BASIC30.66■■■□□ 2.5
Chd4Q6PDQ2 Gng12-204ENSMUST00000114225 1876 ntAPPRIS P1 TSL 1 (best) BASIC30.66■■■□□ 2.5
Chd4Q6PDQ2 Pde8b-204ENSMUST00000159608 2370 ntTSL 5 BASIC30.66■■■□□ 2.5
Chd4Q6PDQ2 Fam50b-202ENSMUST00000221037 1345 ntAPPRIS P1 TSL 1 (best) BASIC30.66■■■□□ 2.5
Chd4Q6PDQ2 Klhl25-205ENSMUST00000206019 2299 ntAPPRIS P1 TSL 1 (best) BASIC30.65■■■□□ 2.5
Chd4Q6PDQ2 Pmvk-201ENSMUST00000029564 1194 ntAPPRIS P1 TSL 1 (best) BASIC30.65■■■□□ 2.5
Chd4Q6PDQ2 H2afy-202ENSMUST00000045788 1933 ntTSL 1 (best) BASIC30.65■■■□□ 2.5
Chd4Q6PDQ2 Ntn5-203ENSMUST00000183120 1491 ntTSL 1 (best) BASIC30.64■■■□□ 2.5
Chd4Q6PDQ2 Btf3l4-203ENSMUST00000102741 1033 ntAPPRIS P1 TSL 1 (best) BASIC30.63■■■□□ 2.49
Chd4Q6PDQ2 Gm44428-201ENSMUST00000204474 874 ntBASIC30.63■■■□□ 2.49
Chd4Q6PDQ2 Galr3-201ENSMUST00000058004 1245 ntAPPRIS P1 TSL 1 (best) BASIC30.63■■■□□ 2.49
Chd4Q6PDQ2 Ints11-202ENSMUST00000120794 1884 ntTSL 5 BASIC30.63■■■□□ 2.49
Chd4Q6PDQ2 Gfra4-206ENSMUST00000110240 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC30.63■■■□□ 2.49
Chd4Q6PDQ2 Cyp2r1-202ENSMUST00000119712 917 ntTSL 5 BASIC30.63■■■□□ 2.49
Chd4Q6PDQ2 Rpl35-201ENSMUST00000080861 946 ntAPPRIS P1 TSL 1 (best) BASIC30.62■■■□□ 2.49
Chd4Q6PDQ2 Srcap-211ENSMUST00000189136 1960 ntTSL 1 (best) BASIC30.62■■■□□ 2.49
Chd4Q6PDQ2 Emid1-201ENSMUST00000062821 1947 ntAPPRIS P2 TSL 1 (best) BASIC30.61■■■□□ 2.49
Chd4Q6PDQ2 Zc3h6-201ENSMUST00000110319 1484 ntTSL 1 (best) BASIC30.61■■■□□ 2.49
Chd4Q6PDQ2 Sec24d-208ENSMUST00000200333 307 ntTSL 1 (best) BASIC30.61■■■□□ 2.49
Chd4Q6PDQ2 Gm21989-201ENSMUST00000174530 1609 ntTSL 1 (best) BASIC30.59■■■□□ 2.49
Chd4Q6PDQ2 Tirap-205ENSMUST00000176685 1783 ntAPPRIS P1 TSL 1 (best) BASIC30.59■■■□□ 2.49
Chd4Q6PDQ2 Gm5812-201ENSMUST00000061073 957 ntBASIC30.59■■■□□ 2.49
Chd4Q6PDQ2 Csnk1g2-201ENSMUST00000079773 2348 ntTSL 1 (best) BASIC30.59■■■□□ 2.49
Chd4Q6PDQ2 Mapkap1-202ENSMUST00000113124 1758 ntAPPRIS ALT1 TSL 5 BASIC30.58■■■□□ 2.49
Chd4Q6PDQ2 Fam92a-208ENSMUST00000177837 1325 ntAPPRIS ALT2 TSL 5 BASIC30.58■■■□□ 2.49
Chd4Q6PDQ2 Hnrnpul1-202ENSMUST00000108401 1240 ntTSL 1 (best) BASIC30.57■■■□□ 2.48
Chd4Q6PDQ2 Rbm45-201ENSMUST00000046389 1898 ntAPPRIS P1 TSL 1 (best) BASIC30.57■■■□□ 2.48
Chd4Q6PDQ2 Ipmk-203ENSMUST00000121446 1492 ntAPPRIS ALT2 TSL 5 BASIC30.57■■■□□ 2.48
Chd4Q6PDQ2 Fezf2-202ENSMUST00000224023 1917 ntBASIC30.56■■■□□ 2.48
Chd4Q6PDQ2 Preb-209ENSMUST00000202567 1869 ntTSL 1 (best) BASIC30.56■■■□□ 2.48
Chd4Q6PDQ2 Ppcs-201ENSMUST00000030385 1443 ntAPPRIS P1 TSL 1 (best) BASIC30.56■■■□□ 2.48
Chd4Q6PDQ2 Nudt3-203ENSMUST00000114886 996 ntTSL 2 BASIC30.56■■■□□ 2.48
Chd4Q6PDQ2 Lsm4-205ENSMUST00000210987 636 ntTSL 5 BASIC30.55■■■□□ 2.48
Chd4Q6PDQ2 Crls1-201ENSMUST00000028835 1924 ntAPPRIS P1 TSL 1 (best) BASIC30.55■■■□□ 2.48
Chd4Q6PDQ2 Frat2-201ENSMUST00000059231 2161 ntAPPRIS P1 BASIC30.54■■■□□ 2.48
Chd4Q6PDQ2 Tmem11-201ENSMUST00000062677 1457 ntAPPRIS P1 TSL 1 (best) BASIC30.53■■■□□ 2.48
Chd4Q6PDQ2 Nucks1-203ENSMUST00000189946 2375 ntAPPRIS ALT2 TSL 1 (best) BASIC30.52■■■□□ 2.48
Chd4Q6PDQ2 Usf1-210ENSMUST00000167546 1822 ntAPPRIS P1 TSL 5 BASIC30.52■■■□□ 2.48
Chd4Q6PDQ2 Gm2415-202ENSMUST00000134688 401 ntTSL 2 BASIC30.51■■■□□ 2.48
Chd4Q6PDQ2 5031425E22Rik-201ENSMUST00000101522 2110 ntBASIC30.51■■■□□ 2.48
Chd4Q6PDQ2 Ubp1-203ENSMUST00000116492 2111 ntAPPRIS ALT1 TSL 1 (best) BASIC30.51■■■□□ 2.47
Chd4Q6PDQ2 Neurog2-201ENSMUST00000029587 2227 ntAPPRIS P1 TSL 1 (best) BASIC30.48■■■□□ 2.47
Chd4Q6PDQ2 Coprs-201ENSMUST00000033839 793 ntAPPRIS P1 TSL 1 (best) BASIC30.48■■■□□ 2.47
Chd4Q6PDQ2 Usp2-206ENSMUST00000176416 1486 ntAPPRIS ALT2 TSL 1 (best) BASIC30.48■■■□□ 2.47
Chd4Q6PDQ2 Gm20458-201ENSMUST00000164863 1369 ntAPPRIS P1 TSL 5 BASIC30.48■■■□□ 2.47
Chd4Q6PDQ2 Jmjd6-201ENSMUST00000047616 1668 ntAPPRIS P1 TSL 1 (best) BASIC30.47■■■□□ 2.47
Chd4Q6PDQ2 Bag1-203ENSMUST00000191273 1348 ntAPPRIS ALT2 TSL 1 (best) BASIC30.47■■■□□ 2.47
Chd4Q6PDQ2 Glrx3-201ENSMUST00000064404 1685 ntAPPRIS P2 TSL 1 (best) BASIC30.47■■■□□ 2.47
Chd4Q6PDQ2 Spryd7-202ENSMUST00000100496 1459 ntTSL 1 (best) BASIC30.46■■■□□ 2.47
Chd4Q6PDQ2 Pcsk1n-201ENSMUST00000041096 2193 ntAPPRIS P1 TSL 1 (best) BASIC30.46■■■□□ 2.47
Chd4Q6PDQ2 Vmac-201ENSMUST00000067931 2174 ntAPPRIS P3 TSL 1 (best) BASIC30.46■■■□□ 2.47
Chd4Q6PDQ2 2410017I17Rik-202ENSMUST00000090537 2053 ntTSL 2 BASIC30.46■■■□□ 2.47
Chd4Q6PDQ2 Hopx-203ENSMUST00000120827 1217 ntAPPRIS P1 TSL 1 (best) BASIC30.45■■■□□ 2.47
Chd4Q6PDQ2 Arhgap22-201ENSMUST00000111955 2148 ntTSL 1 (best) BASIC30.45■■■□□ 2.46
Chd4Q6PDQ2 Lsm4-201ENSMUST00000034311 925 ntAPPRIS P1 TSL 1 (best) BASIC30.45■■■□□ 2.46
Chd4Q6PDQ2 Lin7b-201ENSMUST00000003971 735 ntAPPRIS P1 TSL 1 (best) BASIC30.44■■■□□ 2.46
Chd4Q6PDQ2 Hecw2-202ENSMUST00000097741 1132 ntTSL 1 (best) BASIC30.44■■■□□ 2.46
Chd4Q6PDQ2 Gm20208-202ENSMUST00000219905 1528 ntTSL 1 (best) BASIC30.44■■■□□ 2.46
Chd4Q6PDQ2 Dexi-201ENSMUST00000038281 1389 ntAPPRIS P1 TSL 1 (best) BASIC30.44■■■□□ 2.46
Chd4Q6PDQ2 Becn1-216ENSMUST00000170502 725 ntTSL 1 (best) BASIC30.43■■■□□ 2.46
Chd4Q6PDQ2 Scn1b-201ENSMUST00000098548 1573 ntAPPRIS P1 TSL 1 (best) BASIC30.43■■■□□ 2.46
Chd4Q6PDQ2 Hoxd9-201ENSMUST00000059272 2136 ntAPPRIS P1 TSL 1 (best) BASIC30.43■■■□□ 2.46
Chd4Q6PDQ2 Hras-202ENSMUST00000097957 1199 ntAPPRIS P1 TSL 2 BASIC30.42■■■□□ 2.46
Chd4Q6PDQ2 Hist2h3c1-201ENSMUST00000176059 1820 ntAPPRIS P1 BASIC30.42■■■□□ 2.46
Chd4Q6PDQ2 Hist2h3c1-202ENSMUST00000177796 1825 ntBASIC30.42■■■□□ 2.46
Chd4Q6PDQ2 Pdpk1-203ENSMUST00000115407 1730 ntTSL 5 BASIC30.42■■■□□ 2.46
Chd4Q6PDQ2 Isoc1-201ENSMUST00000025503 2563 ntAPPRIS P1 TSL 1 (best) BASIC30.41■■■□□ 2.46
Chd4Q6PDQ2 Suds3-201ENSMUST00000086471 2425 ntAPPRIS P3 TSL 1 (best) BASIC30.4■■■□□ 2.46
Chd4Q6PDQ2 Btg3-201ENSMUST00000023570 1414 ntAPPRIS P1 TSL 1 (best) BASIC30.4■■■□□ 2.46
Chd4Q6PDQ2 H1fx-201ENSMUST00000056403 1217 ntAPPRIS P1 BASIC30.39■■■□□ 2.46
Chd4Q6PDQ2 Dynll1-202ENSMUST00000112090 729 ntAPPRIS P1 TSL 2 BASIC30.39■■■□□ 2.46
Chd4Q6PDQ2 Faim-202ENSMUST00000112911 803 ntAPPRIS ALT1 TSL 2 BASIC30.39■■■□□ 2.46
Chd4Q6PDQ2 Gm43592-201ENSMUST00000196922 1165 ntBASIC30.39■■■□□ 2.46
Chd4Q6PDQ2 Tm2d2-201ENSMUST00000033961 1281 ntAPPRIS P1 TSL 1 (best) BASIC30.39■■■□□ 2.46
Chd4Q6PDQ2 Tmem106c-201ENSMUST00000064200 1635 ntAPPRIS P1 TSL 1 (best) BASIC30.39■■■□□ 2.45
Chd4Q6PDQ2 Efna2-201ENSMUST00000003154 2131 ntAPPRIS P1 TSL 1 (best) BASIC30.38■■■□□ 2.45
Chd4Q6PDQ2 Upf3a-201ENSMUST00000043767 2057 ntAPPRIS P1 TSL 1 (best) BASIC30.37■■■□□ 2.45
Chd4Q6PDQ2 Snx21-203ENSMUST00000152471 1243 ntTSL 1 (best) BASIC30.36■■■□□ 2.45
Chd4Q6PDQ2 Jdp2-201ENSMUST00000050687 1643 ntAPPRIS P1 TSL 1 (best) BASIC30.36■■■□□ 2.45
Chd4Q6PDQ2 Ppp1r14c-202ENSMUST00000217573 2013 ntTSL 1 (best) BASIC30.36■■■□□ 2.45
Chd4Q6PDQ2 AC161180.1-201ENSMUST00000223439 933 ntAPPRIS P1 BASIC30.35■■■□□ 2.45
Retrieved 100 of 76,532 protein–RNA pairs in 51.1 ms