Protein–RNA interactions for Protein: Q3U1J4

Ddb1, DNA damage-binding protein 1, mousemouse

Known RBP Predictions only

Length 1,140 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddb1Q3U1J4 Dynll1-202ENSMUST00000112090 729 ntAPPRIS P1 TSL 2 BASIC29.9■■■□□ 2.38
Ddb1Q3U1J4 0610009L18Rik-201ENSMUST00000143813 619 ntTSL 2 BASIC29.9■■■□□ 2.38
Ddb1Q3U1J4 Gm45102-201ENSMUST00000207427 857 ntBASIC29.9■■■□□ 2.38
Ddb1Q3U1J4 Adprhl2-201ENSMUST00000102617 1672 ntAPPRIS P1 TSL 1 (best) BASIC29.9■■■□□ 2.38
Ddb1Q3U1J4 Arl8a-201ENSMUST00000027684 1713 ntAPPRIS P1 TSL 1 (best) BASIC29.9■■■□□ 2.38
Ddb1Q3U1J4 D17Wsu92e-201ENSMUST00000075076 1470 ntTSL 1 (best) BASIC29.89■■■□□ 2.38
Ddb1Q3U1J4 Gm14121-201ENSMUST00000121441 1380 ntBASIC29.89■■■□□ 2.37
Ddb1Q3U1J4 Mapkap1-202ENSMUST00000113124 1758 ntAPPRIS ALT1 TSL 5 BASIC29.88■■■□□ 2.37
Ddb1Q3U1J4 Slc16a6-203ENSMUST00000070872 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC29.88■■■□□ 2.37
Ddb1Q3U1J4 Sh3gl3-201ENSMUST00000032874 1647 ntAPPRIS P1 TSL 1 (best) BASIC29.88■■■□□ 2.37
Ddb1Q3U1J4 Mpp6-202ENSMUST00000036236 2161 ntAPPRIS P1 TSL 1 (best) BASIC29.86■■■□□ 2.37
Ddb1Q3U1J4 Gm14117-201ENSMUST00000122417 843 ntBASIC29.85■■■□□ 2.37
Ddb1Q3U1J4 Gm26536-201ENSMUST00000181072 1196 ntTSL 1 (best) BASIC29.85■■■□□ 2.37
Ddb1Q3U1J4 Gm43592-201ENSMUST00000196922 1165 ntBASIC29.85■■■□□ 2.37
Ddb1Q3U1J4 Lsm4-201ENSMUST00000034311 925 ntAPPRIS P1 TSL 1 (best) BASIC29.85■■■□□ 2.37
Ddb1Q3U1J4 Smox-206ENSMUST00000110183 1159 ntTSL 1 (best) BASIC29.84■■■□□ 2.37
Ddb1Q3U1J4 Gm28040-202ENSMUST00000184603 890 ntAPPRIS P1 TSL 2 BASIC29.84■■■□□ 2.37
Ddb1Q3U1J4 Gm28417-202ENSMUST00000185881 538 ntTSL 3 BASIC29.84■■■□□ 2.37
Ddb1Q3U1J4 Srcap-202ENSMUST00000098025 1257 ntTSL 5 BASIC29.84■■■□□ 2.37
Ddb1Q3U1J4 Kctd6-201ENSMUST00000022272 1650 ntAPPRIS P1 TSL 1 (best) BASIC29.84■■■□□ 2.37
Ddb1Q3U1J4 Vax1-201ENSMUST00000172821 1044 ntAPPRIS P1 TSL 1 (best) BASIC29.83■■■□□ 2.37
Ddb1Q3U1J4 A230020J21Rik-202ENSMUST00000192407 1649 ntTSL 2 BASIC29.82■■■□□ 2.36
Ddb1Q3U1J4 Rps19-202ENSMUST00000108429 633 ntAPPRIS P1 TSL 2 BASIC29.82■■■□□ 2.36
Ddb1Q3U1J4 Dhrs11-201ENSMUST00000047560 1254 ntAPPRIS P1 TSL 1 (best) BASIC29.82■■■□□ 2.36
Ddb1Q3U1J4 Scand1-201ENSMUST00000079125 759 ntAPPRIS P1 TSL 1 (best) BASIC29.82■■■□□ 2.36
Ddb1Q3U1J4 Gm45444-201ENSMUST00000211394 898 ntBASIC29.81■■■□□ 2.36
Ddb1Q3U1J4 Rras2-201ENSMUST00000069449 2275 ntAPPRIS P1 TSL 1 (best) BASIC29.81■■■□□ 2.36
Ddb1Q3U1J4 Ybx3-201ENSMUST00000032309 1853 ntAPPRIS P4 TSL 1 (best) BASIC29.8■■■□□ 2.36
Ddb1Q3U1J4 Gmeb1-202ENSMUST00000105964 1925 ntAPPRIS P1 TSL 1 (best) BASIC29.8■■■□□ 2.36
Ddb1Q3U1J4 Rundc3b-202ENSMUST00000115378 1891 ntAPPRIS ALT2 TSL 5 BASIC29.79■■■□□ 2.36
Ddb1Q3U1J4 Cdkn2d-203ENSMUST00000215619 1423 ntAPPRIS P1 TSL 1 (best) BASIC29.79■■■□□ 2.36
Ddb1Q3U1J4 Camk2n2-201ENSMUST00000052939 1291 ntAPPRIS P1 TSL 1 (best) BASIC29.78■■■□□ 2.36
Ddb1Q3U1J4 Ipmk-203ENSMUST00000121446 1492 ntAPPRIS ALT2 TSL 5 BASIC29.78■■■□□ 2.36
Ddb1Q3U1J4 March5-202ENSMUST00000112391 1293 ntTSL 1 (best) BASIC29.77■■■□□ 2.36
Ddb1Q3U1J4 Fkbp1b-201ENSMUST00000020964 976 ntAPPRIS P1 TSL 1 (best) BASIC29.77■■■□□ 2.36
Ddb1Q3U1J4 Arpp19-206ENSMUST00000168301 599 ntTSL 5 BASIC29.76■■■□□ 2.35
Ddb1Q3U1J4 Jdp2-201ENSMUST00000050687 1643 ntAPPRIS P1 TSL 1 (best) BASIC29.75■■■□□ 2.35
Ddb1Q3U1J4 Gt(ROSA)26Sor-201ENSMUST00000124246 1181 ntTSL 1 (best) BASIC29.75■■■□□ 2.35
Ddb1Q3U1J4 Rpl34-201ENSMUST00000062601 624 ntAPPRIS P1 TSL 1 (best) BASIC29.75■■■□□ 2.35
Ddb1Q3U1J4 Pex10-201ENSMUST00000103180 1688 ntAPPRIS P1 TSL 1 (best) BASIC29.75■■■□□ 2.35
Ddb1Q3U1J4 Cckbr-202ENSMUST00000181339 1326 ntTSL 1 (best) BASIC29.74■■■□□ 2.35
Ddb1Q3U1J4 Dnttip1-201ENSMUST00000017443 1664 ntAPPRIS P1 TSL 1 (best) BASIC29.74■■■□□ 2.35
Ddb1Q3U1J4 Tmem238-201ENSMUST00000168578 1375 ntAPPRIS P1 TSL 1 (best) BASIC29.74■■■□□ 2.35
Ddb1Q3U1J4 Gm42501-201ENSMUST00000200220 1026 ntBASIC29.73■■■□□ 2.35
Ddb1Q3U1J4 Hecw2-202ENSMUST00000097741 1132 ntTSL 1 (best) BASIC29.73■■■□□ 2.35
Ddb1Q3U1J4 Ap1ar-210ENSMUST00000200409 2580 ntTSL 5 BASIC29.73■■■□□ 2.35
Ddb1Q3U1J4 Usp2-206ENSMUST00000176416 1486 ntAPPRIS ALT2 TSL 1 (best) BASIC29.73■■■□□ 2.35
Ddb1Q3U1J4 Gm37847-201ENSMUST00000192163 1497 ntBASIC29.73■■■□□ 2.35
Ddb1Q3U1J4 Gm31748-201ENSMUST00000194938 1497 ntBASIC29.73■■■□□ 2.35
Ddb1Q3U1J4 Ube2k-206ENSMUST00000201984 1449 ntTSL 3 BASIC29.72■■■□□ 2.35
Ddb1Q3U1J4 Pde6d-203ENSMUST00000146220 879 ntTSL 2 BASIC29.72■■■□□ 2.35
Ddb1Q3U1J4 March2-203ENSMUST00000172767 1381 ntAPPRIS P1 TSL 1 (best) BASIC29.71■■■□□ 2.35
Ddb1Q3U1J4 Ybx3-202ENSMUST00000087865 1684 ntAPPRIS ALT2 TSL 1 (best) BASIC29.7■■■□□ 2.35
Ddb1Q3U1J4 Ntn5-203ENSMUST00000183120 1491 ntTSL 1 (best) BASIC29.7■■■□□ 2.35
Ddb1Q3U1J4 Smox-205ENSMUST00000110182 985 ntTSL 1 (best) BASIC29.7■■■□□ 2.35
Ddb1Q3U1J4 Gm20684-201ENSMUST00000176744 380 ntTSL 3 BASIC29.7■■■□□ 2.35
Ddb1Q3U1J4 Mapk1-203ENSMUST00000115731 1747 ntAPPRIS P1 TSL 1 (best) BASIC29.7■■■□□ 2.34
Ddb1Q3U1J4 Six3-202ENSMUST00000175898 2419 ntAPPRIS P2 TSL 1 (best) BASIC29.7■■■□□ 2.34
Ddb1Q3U1J4 Tmem150b-201ENSMUST00000086363 1341 ntAPPRIS P1 TSL 1 (best) BASIC29.7■■■□□ 2.34
Ddb1Q3U1J4 Cyp2r1-202ENSMUST00000119712 917 ntTSL 5 BASIC29.69■■■□□ 2.34
Ddb1Q3U1J4 Eif5a-213ENSMUST00000164359 1281 ntAPPRIS P1 TSL 5 BASIC29.69■■■□□ 2.34
Ddb1Q3U1J4 Gm9959-201ENSMUST00000068277 390 ntBASIC29.69■■■□□ 2.34
Ddb1Q3U1J4 Dazap1-203ENSMUST00000105362 2081 ntAPPRIS P3 TSL 1 (best) BASIC29.68■■■□□ 2.34
Ddb1Q3U1J4 Pcf11-204ENSMUST00000208058 461 ntTSL 5 BASIC29.68■■■□□ 2.34
Ddb1Q3U1J4 Cetn4-201ENSMUST00000071400 1808 ntTSL 5 BASIC29.68■■■□□ 2.34
Ddb1Q3U1J4 Gm21989-201ENSMUST00000174530 1609 ntTSL 1 (best) BASIC29.67■■■□□ 2.34
Ddb1Q3U1J4 Usf1-210ENSMUST00000167546 1822 ntAPPRIS P1 TSL 5 BASIC29.67■■■□□ 2.34
Ddb1Q3U1J4 Gm16599-201ENSMUST00000148082 1182 ntTSL 1 (best) BASIC29.67■■■□□ 2.34
Ddb1Q3U1J4 Fn1-208ENSMUST00000186940 1350 ntTSL 1 (best) BASIC29.65■■■□□ 2.34
Ddb1Q3U1J4 Arpc2-203ENSMUST00000113820 1439 ntAPPRIS P1 TSL 1 (best) BASIC29.65■■■□□ 2.34
Ddb1Q3U1J4 Fam168b-204ENSMUST00000170092 941 ntTSL 5 BASIC29.65■■■□□ 2.34
Ddb1Q3U1J4 Cpsf4-205ENSMUST00000160629 1713 ntAPPRIS ALT1 TSL 1 (best) BASIC29.65■■■□□ 2.34
Ddb1Q3U1J4 Gm13429-202ENSMUST00000128242 692 ntTSL 3 BASIC29.64■■■□□ 2.34
Ddb1Q3U1J4 Lor-201ENSMUST00000058150 1779 ntAPPRIS P1 TSL 1 (best) BASIC29.64■■■□□ 2.34
Ddb1Q3U1J4 Mpnd-208ENSMUST00000159996 1444 ntAPPRIS ALT2 TSL 5 BASIC29.63■■■□□ 2.33
Ddb1Q3U1J4 Oaz2-206ENSMUST00000153700 1843 ntAPPRIS P2 TSL 5 BASIC29.63■■■□□ 2.33
Ddb1Q3U1J4 Hrh3-205ENSMUST00000165762 1368 ntAPPRIS ALT2 TSL 5 BASIC29.63■■■□□ 2.33
Ddb1Q3U1J4 Gm9767-201ENSMUST00000041011 1193 ntAPPRIS P1 BASIC29.62■■■□□ 2.33
Ddb1Q3U1J4 Zxda-201ENSMUST00000117281 2621 ntBASIC29.62■■■□□ 2.33
Ddb1Q3U1J4 Pgls-205ENSMUST00000143441 1062 ntTSL 3 BASIC29.61■■■□□ 2.33
Ddb1Q3U1J4 Ppp1cb-206ENSMUST00000202078 383 ntTSL 5 BASIC29.61■■■□□ 2.33
Ddb1Q3U1J4 Cdc42ep5-201ENSMUST00000076831 1025 ntAPPRIS P1 TSL 1 (best) BASIC29.61■■■□□ 2.33
Ddb1Q3U1J4 Anxa5-201ENSMUST00000029266 1731 ntAPPRIS P1 TSL 1 (best) BASIC29.61■■■□□ 2.33
Ddb1Q3U1J4 Pdf-201ENSMUST00000055316 1306 ntAPPRIS P1 TSL 1 (best) BASIC29.61■■■□□ 2.33
Ddb1Q3U1J4 A230005M16Rik-201ENSMUST00000137661 1605 ntTSL 1 (best) BASIC29.6■■■□□ 2.33
Ddb1Q3U1J4 Gm18755-201ENSMUST00000218030 1099 ntBASIC29.6■■■□□ 2.33
Ddb1Q3U1J4 Arhgap39-204ENSMUST00000176219 542 ntTSL 5 BASIC29.59■■■□□ 2.33
Ddb1Q3U1J4 Tmem150a-202ENSMUST00000132243 1478 ntTSL 5 BASIC29.59■■■□□ 2.33
Ddb1Q3U1J4 4921531C22Rik-201ENSMUST00000150145 1905 ntTSL 1 (best) BASIC29.58■■■□□ 2.33
Ddb1Q3U1J4 Zfp346-203ENSMUST00000159278 1253 ntAPPRIS ALT2 TSL 5 BASIC29.58■■■□□ 2.33
Ddb1Q3U1J4 Hagh-201ENSMUST00000024974 1101 ntAPPRIS ALT1 TSL 5 BASIC29.57■■■□□ 2.32
Ddb1Q3U1J4 Nr2f6-201ENSMUST00000002466 2218 ntAPPRIS P1 TSL 1 (best) BASIC29.57■■■□□ 2.32
Ddb1Q3U1J4 Ndfip1-201ENSMUST00000025293 930 ntAPPRIS P1 TSL 1 (best) BASIC29.56■■■□□ 2.32
Ddb1Q3U1J4 Vegfb-201ENSMUST00000025914 1281 ntAPPRIS P3 TSL 1 (best) BASIC29.56■■■□□ 2.32
Ddb1Q3U1J4 1700016K19Rik-201ENSMUST00000066408 921 ntAPPRIS P1 TSL 1 (best) BASIC29.55■■■□□ 2.32
Ddb1Q3U1J4 Barx1-201ENSMUST00000021813 1399 ntAPPRIS P1 TSL 1 (best) BASIC29.54■■■□□ 2.32
Ddb1Q3U1J4 AC117769.4-201ENSMUST00000225679 685 ntBASIC29.54■■■□□ 2.32
Ddb1Q3U1J4 Tsg101-201ENSMUST00000014546 1949 ntAPPRIS P1 TSL 1 (best) BASIC29.53■■■□□ 2.32
Ddb1Q3U1J4 Zxdb-201ENSMUST00000101388 5619 ntAPPRIS P1 BASIC29.53■■■□□ 2.32
Ddb1Q3U1J4 Tmem55b-209ENSMUST00000162957 1465 ntTSL 1 (best) BASIC29.53■■■□□ 2.32
Retrieved 100 of 76,532 protein–RNA pairs in 19.6 ms