Protein–RNA interactions for Protein: P98160

HSPG2, Basement membrane-specific heparan sulfate proteoglycan core protein, humanhuman

Predictions only

Length 4,391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2P98160 FMR1-219ENST00000621453 1864 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
HSPG2P98160 FKBP1B-202ENST00000380991 1010 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
HSPG2P98160 STK25-202ENST00000401869 2251 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
HSPG2P98160 AL160276.1-201ENST00000636672 1312 ntAPPRIS P1 TSL 5 BASIC15.97■□□□□ 0.15
HSPG2P98160 REST-210ENST00000638187 1334 ntTSL 5 BASIC15.97■□□□□ 0.15
HSPG2P98160 MSX1-201ENST00000382723 1939 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
HSPG2P98160 AC239859.2-201ENST00000444165 318 ntBASIC15.96■□□□□ 0.15
HSPG2P98160 GUCD1-207ENST00000447813 895 ntTSL 3 BASIC15.96■□□□□ 0.14
HSPG2P98160 PTGER1-201ENST00000292513 1421 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.14
HSPG2P98160 SMKR1-201ENST00000462322 1035 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
HSPG2P98160 AL031848.2-201ENST00000607670 837 ntBASIC15.95■□□□□ 0.14
HSPG2P98160 TTC36-201ENST00000302783 874 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
HSPG2P98160 RALB-208ENST00000631312 311 ntTSL 5 BASIC15.95■□□□□ 0.14
HSPG2P98160 ZNF606-203ENST00000547121 1196 ntTSL 2 BASIC15.95■□□□□ 0.14
HSPG2P98160 OVOL2-201ENST00000278780 1555 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
HSPG2P98160 PROCA1-201ENST00000301039 1566 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
HSPG2P98160 FEZ1-201ENST00000278919 1748 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
HSPG2P98160 AC008406.3-201ENST00000620001 1374 ntBASIC15.94■□□□□ 0.14
HSPG2P98160 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
HSPG2P98160 SNTG2-201ENST00000308624 1888 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
HSPG2P98160 PABPC1L-202ENST00000217074 1263 ntTSL 5 BASIC15.94■□□□□ 0.14
HSPG2P98160 CD63-201ENST00000257857 1070 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
HSPG2P98160 RDX-206ENST00000528900 1814 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
HSPG2P98160 SERTAD4-AS1-202ENST00000475406 591 ntTSL 2 BASIC15.93■□□□□ 0.14
HSPG2P98160 LTC4S-205ENST00000486713 496 ntTSL 2 BASIC15.93■□□□□ 0.14
HSPG2P98160 TMEM170A-202ENST00000561878 1072 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
HSPG2P98160 AC009163.4-201ENST00000567194 530 ntAPPRIS P1 TSL 2 BASIC15.93■□□□□ 0.14
HSPG2P98160 C14orf80-203ENST00000354560 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC15.93■□□□□ 0.14
HSPG2P98160 PPP4C-201ENST00000279387 1407 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
HSPG2P98160 UBAC1-201ENST00000371756 1867 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
HSPG2P98160 C1QTNF8-201ENST00000328449 1627 ntAPPRIS P1 TSL 5 BASIC15.93■□□□□ 0.14
HSPG2P98160 AC120057.4-201ENST00000624722 1615 ntBASIC15.93■□□□□ 0.14
HSPG2P98160 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC15.93■□□□□ 0.14
HSPG2P98160 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC15.93■□□□□ 0.14
HSPG2P98160 CNIH2-203ENST00000528852 1524 ntAPPRIS ALT1 TSL 1 (best) BASIC15.93■□□□□ 0.14
HSPG2P98160 TSPY4-202ENST00000426950 1179 ntAPPRIS P5 TSL 5 BASIC15.92■□□□□ 0.14
HSPG2P98160 CDKN3-207ENST00000543789 610 ntTSL 5 BASIC15.92■□□□□ 0.14
HSPG2P98160 AC008105.2-203ENST00000591361 550 ntTSL 4 BASIC15.92■□□□□ 0.14
HSPG2P98160 ZFAND5-202ENST00000343431 1073 ntAPPRIS P1 TSL 5 BASIC15.92■□□□□ 0.14
HSPG2P98160 MSRB1-206ENST00000622125 1363 ntAPPRIS ALT1 TSL 5 BASIC15.92■□□□□ 0.14
HSPG2P98160 HM13-AS1-201ENST00000412178 489 ntTSL 3 BASIC15.92■□□□□ 0.14
HSPG2P98160 NKIRAS2-208ENST00000462043 585 ntTSL 4 BASIC15.92■□□□□ 0.14
HSPG2P98160 TYMP-201ENST00000252029 1630 ntAPPRIS P3 TSL 1 (best) BASIC15.92■□□□□ 0.14
HSPG2P98160 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC15.91■□□□□ 0.14
HSPG2P98160 TCEA1-213ENST00000640041 1171 ntTSL 5 BASIC15.91■□□□□ 0.14
HSPG2P98160 VSTM2A-202ENST00000402613 1076 ntTSL 2 BASIC15.91■□□□□ 0.14
HSPG2P98160 HAGHL-205ENST00000561546 1041 ntTSL 2 BASIC15.91■□□□□ 0.14
HSPG2P98160 MTERF3-201ENST00000287025 1409 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
HSPG2P98160 LMAN2-208ENST00000515209 1149 ntAPPRIS ALT2 TSL 3 BASIC15.9■□□□□ 0.14
HSPG2P98160 PKIG-205ENST00000372891 1443 ntAPPRIS P1 TSL 2 BASIC15.9■□□□□ 0.14
HSPG2P98160 COQ2-201ENST00000311461 1464 ntAPPRIS ALT2 TSL 5 BASIC15.9■□□□□ 0.14
HSPG2P98160 IDNK-201ENST00000376417 511 ntTSL 5 BASIC15.89■□□□□ 0.13
HSPG2P98160 IDNK-202ENST00000376419 692 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
HSPG2P98160 CREM-229ENST00000474362 1030 ntTSL 2 BASIC15.89■□□□□ 0.13
HSPG2P98160 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC15.89■□□□□ 0.13
HSPG2P98160 Z92544.1-202ENST00000571933 1220 ntBASIC15.89■□□□□ 0.13
HSPG2P98160 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
HSPG2P98160 RAD51-208ENST00000532743 1515 ntTSL 2 BASIC15.89■□□□□ 0.13
HSPG2P98160 MPC1-201ENST00000341756 976 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
HSPG2P98160 YBX1P4-201ENST00000392794 808 ntBASIC15.89■□□□□ 0.13
HSPG2P98160 FAM173A-207ENST00000569529 1052 ntAPPRIS P3 TSL 1 (best) BASIC15.89■□□□□ 0.13
HSPG2P98160 MPC1-206ENST00000621630 977 ntAPPRIS ALT1 TSL 5 BASIC15.89■□□□□ 0.13
HSPG2P98160 MPC1-207ENST00000621685 1192 ntTSL 5 BASIC15.89■□□□□ 0.13
HSPG2P98160 RBM42-205ENST00000589871 1487 ntTSL 5 BASIC15.89■□□□□ 0.13
HSPG2P98160 TUBB6-201ENST00000317702 2064 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
HSPG2P98160 NPC2-207ENST00000555619 1035 ntAPPRIS P2 TSL 1 (best) BASIC15.88■□□□□ 0.13
HSPG2P98160 IL17D-201ENST00000304920 1861 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
HSPG2P98160 PFDN2-201ENST00000368010 677 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
HSPG2P98160 AL117209.1-201ENST00000560931 828 ntTSL 3 BASIC15.88■□□□□ 0.13
HSPG2P98160 GRAMD4P7-201ENST00000578182 1232 ntBASIC15.88■□□□□ 0.13
HSPG2P98160 CDKN2A-214ENST00000579755 1283 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
HSPG2P98160 PSMG4-206ENST00000438998 838 ntAPPRIS P1 TSL 2 BASIC15.88■□□□□ 0.13
HSPG2P98160 SAMD1-202ENST00000533683 2164 ntAPPRIS P5 TSL 1 (best) BASIC15.87■□□□□ 0.13
HSPG2P98160 EFNA1-202ENST00000368407 1926 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
HSPG2P98160 DHRS13-203ENST00000426464 1569 ntTSL 2 BASIC15.87■□□□□ 0.13
HSPG2P98160 AL590094.1-201ENST00000635581 706 ntTSL 2 BASIC15.87■□□□□ 0.13
HSPG2P98160 RARRES2P6-201ENST00000567333 442 ntBASIC15.86■□□□□ 0.13
HSPG2P98160 AC092666.2-201ENST00000613287 246 ntBASIC15.86■□□□□ 0.13
HSPG2P98160 BOD1-202ENST00000311086 1562 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
HSPG2P98160 GATA2-AS1-202ENST00000468377 1578 ntTSL 2 BASIC15.86■□□□□ 0.13
HSPG2P98160 PPP1R14A-205ENST00000591585 949 ntTSL 2 BASIC15.86■□□□□ 0.13
HSPG2P98160 AL139246.5-201ENST00000606645 996 ntBASIC15.86■□□□□ 0.13
HSPG2P98160 AC093762.1-201ENST00000641981 837 ntAPPRIS P1 BASIC15.86■□□□□ 0.13
HSPG2P98160 LINC01233-202ENST00000598832 568 ntTSL 2 BASIC15.85■□□□□ 0.13
HSPG2P98160 HIST1H2AL-201ENST00000613174 393 ntAPPRIS P1 BASIC15.85■□□□□ 0.13
HSPG2P98160 CCDC194-202ENST00000636079 705 ntAPPRIS P1 TSL 5 BASIC15.85■□□□□ 0.13
HSPG2P98160 CARS2-201ENST00000257347 1879 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
HSPG2P98160 OSCAR-206ENST00000391760 629 ntTSL 2 BASIC15.85■□□□□ 0.13
HSPG2P98160 CCND3-205ENST00000415497 1843 ntTSL 2 BASIC15.85■□□□□ 0.13
HSPG2P98160 MDFIC-206ENST00000448022 484 ntTSL 2 BASIC15.85■□□□□ 0.13
HSPG2P98160 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC15.85■□□□□ 0.13
HSPG2P98160 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC15.85■□□□□ 0.13
HSPG2P98160 SDF2L1-201ENST00000248958 865 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
HSPG2P98160 MLST8-203ENST00000397124 1691 ntAPPRIS P3 TSL 5 BASIC15.84■□□□□ 0.13
HSPG2P98160 NKX2-5-202ENST00000424406 1124 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
HSPG2P98160 PITX3-202ENST00000539804 1187 ntAPPRIS P1 TSL 5 BASIC15.84■□□□□ 0.13
HSPG2P98160 MAPK12-201ENST00000215659 1918 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
HSPG2P98160 RNF146-205ENST00000477776 762 ntTSL 3 BASIC15.84■□□□□ 0.13
HSPG2P98160 MRPL4-201ENST00000253099 1455 ntAPPRIS P2 TSL 1 (best) BASIC15.84■□□□□ 0.13
HSPG2P98160 CARNMT1-201ENST00000376830 1012 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 42.6 ms