Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 WDR86-204ENST00000477459 1428 ntTSL 2 BASIC18.66■□□□□ 0.58
PRKDCP78527 PRKAR1B-201ENST00000360274 2007 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
PRKDCP78527 PPP1R14A-205ENST00000591585 949 ntTSL 2 BASIC18.66■□□□□ 0.58
PRKDCP78527 PI4KAP1-202ENST00000611748 1906 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
PRKDCP78527 TAZ-201ENST00000369776 1596 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
PRKDCP78527 PABPC1L-202ENST00000217074 1263 ntTSL 5 BASIC18.65■□□□□ 0.58
PRKDCP78527 PELI3-203ENST00000524466 1671 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
PRKDCP78527 AVEN-201ENST00000306730 1605 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
PRKDCP78527 Z92544.1-202ENST00000571933 1220 ntBASIC18.65■□□□□ 0.58
PRKDCP78527 MAPK8IP1P1-201ENST00000574657 1439 ntBASIC18.64■□□□□ 0.57
PRKDCP78527 ZFAND5-202ENST00000343431 1073 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
PRKDCP78527 AL117209.1-201ENST00000560931 828 ntTSL 3 BASIC18.64■□□□□ 0.57
PRKDCP78527 HIST1H2AL-201ENST00000613174 393 ntAPPRIS P1 BASIC18.64■□□□□ 0.57
PRKDCP78527 ANGPTL6-203ENST00000589181 1579 ntTSL 5 BASIC18.64■□□□□ 0.57
PRKDCP78527 YBX1P4-201ENST00000392794 808 ntBASIC18.64■□□□□ 0.57
PRKDCP78527 GKAP1-203ENST00000376371 1778 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
PRKDCP78527 AC127502.1-201ENST00000399971 1502 ntBASIC18.63■□□□□ 0.57
PRKDCP78527 NKX2-5-202ENST00000424406 1124 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
PRKDCP78527 NKIRAS2-208ENST00000462043 585 ntTSL 4 BASIC18.63■□□□□ 0.57
PRKDCP78527 TYMP-201ENST00000252029 1630 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
PRKDCP78527 TSPY4-202ENST00000426950 1179 ntAPPRIS P5 TSL 5 BASIC18.62■□□□□ 0.57
PRKDCP78527 GRAMD4P7-201ENST00000578182 1232 ntBASIC18.62■□□□□ 0.57
PRKDCP78527 CCDC194-202ENST00000636079 705 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
PRKDCP78527 AL161658.1-201ENST00000623641 1967 ntBASIC18.62■□□□□ 0.57
PRKDCP78527 FOXB2-201ENST00000376708 1299 ntAPPRIS P1 BASIC18.62■□□□□ 0.57
PRKDCP78527 AC010864.1-201ENST00000609407 1511 ntBASIC18.61■□□□□ 0.57
PRKDCP78527 CDKN2A-214ENST00000579755 1283 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
PRKDCP78527 MSRB1-206ENST00000622125 1363 ntAPPRIS ALT1 TSL 5 BASIC18.61■□□□□ 0.57
PRKDCP78527 SCARA3-202ENST00000337221 1910 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
PRKDCP78527 BOD1-202ENST00000311086 1562 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
PRKDCP78527 SDF2L1-201ENST00000248958 865 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
PRKDCP78527 VSTM2A-202ENST00000402613 1076 ntTSL 2 BASIC18.61■□□□□ 0.57
PRKDCP78527 SUMF1-205ENST00000458465 1102 ntTSL 2 BASIC18.6■□□□□ 0.57
PRKDCP78527 LMAN2-208ENST00000515209 1149 ntAPPRIS ALT2 TSL 3 BASIC18.6■□□□□ 0.57
PRKDCP78527 AL139246.5-201ENST00000606645 996 ntBASIC18.6■□□□□ 0.57
PRKDCP78527 TRIOBP-205ENST00000407319 2125 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
PRKDCP78527 PROCA1-201ENST00000301039 1566 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
PRKDCP78527 TTC36-201ENST00000302783 874 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
PRKDCP78527 AL590094.1-201ENST00000635581 706 ntTSL 2 BASIC18.6■□□□□ 0.57
PRKDCP78527 ADRA2C-202ENST00000509482 1600 ntTSL 3 BASIC18.6■□□□□ 0.57
PRKDCP78527 RAD51-208ENST00000532743 1515 ntTSL 2 BASIC18.6■□□□□ 0.57
PRKDCP78527 RBM42-205ENST00000589871 1487 ntTSL 5 BASIC18.6■□□□□ 0.57
PRKDCP78527 CREM-229ENST00000474362 1030 ntTSL 2 BASIC18.59■□□□□ 0.57
PRKDCP78527 MTERF3-201ENST00000287025 1409 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
PRKDCP78527 PTGER1-201ENST00000292513 1421 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
PRKDCP78527 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC18.59■□□□□ 0.57
PRKDCP78527 ZNF606-203ENST00000547121 1196 ntTSL 2 BASIC18.59■□□□□ 0.57
PRKDCP78527 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC18.59■□□□□ 0.57
PRKDCP78527 ANGPTL6-204ENST00000592641 1781 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
PRKDCP78527 TCEA1-213ENST00000640041 1171 ntTSL 5 BASIC18.59■□□□□ 0.57
PRKDCP78527 AC093762.1-201ENST00000641981 837 ntAPPRIS P1 BASIC18.59■□□□□ 0.57
PRKDCP78527 DPP6-204ENST00000406326 2012 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
PRKDCP78527 TMEM134-202ENST00000393877 823 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
PRKDCP78527 SSBP3-202ENST00000357475 1533 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
PRKDCP78527 PYCARD-202ENST00000350605 696 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
PRKDCP78527 ARL8A-204ENST00000614750 1727 ntTSL 3 BASIC18.57■□□□□ 0.56
PRKDCP78527 MPC1-201ENST00000341756 976 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
PRKDCP78527 MPC1-206ENST00000621630 977 ntAPPRIS ALT1 TSL 5 BASIC18.57■□□□□ 0.56
PRKDCP78527 MPC1-207ENST00000621685 1192 ntTSL 5 BASIC18.57■□□□□ 0.56
PRKDCP78527 SLC25A10-203ENST00000545862 1911 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
PRKDCP78527 UBAC1-201ENST00000371756 1867 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
PRKDCP78527 LTC4S-205ENST00000486713 496 ntTSL 2 BASIC18.57■□□□□ 0.56
PRKDCP78527 FAM173A-207ENST00000569529 1052 ntAPPRIS P3 TSL 1 (best) BASIC18.57■□□□□ 0.56
PRKDCP78527 COQ2-201ENST00000311461 1464 ntAPPRIS ALT2 TSL 5 BASIC18.57■□□□□ 0.56
PRKDCP78527 OVOL2-201ENST00000278780 1555 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
PRKDCP78527 PKIG-205ENST00000372891 1443 ntAPPRIS P1 TSL 2 BASIC18.57■□□□□ 0.56
PRKDCP78527 IDNK-201ENST00000376417 511 ntTSL 5 BASIC18.56■□□□□ 0.56
PRKDCP78527 IDNK-202ENST00000376419 692 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
PRKDCP78527 CDKN2A-208ENST00000498124 880 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
PRKDCP78527 HAGHL-205ENST00000561546 1041 ntTSL 2 BASIC18.56■□□□□ 0.56
PRKDCP78527 CCZ1-201ENST00000325974 1802 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
PRKDCP78527 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
PRKDCP78527 AC008105.2-203ENST00000591361 550 ntTSL 4 BASIC18.56■□□□□ 0.56
PRKDCP78527 C14orf80-203ENST00000354560 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
PRKDCP78527 DTWD2-204ENST00000515439 1275 ntTSL 5 BASIC18.55■□□□□ 0.56
PRKDCP78527 MAPK3-201ENST00000263025 1861 ntAPPRIS P3 TSL 1 (best) BASIC18.55■□□□□ 0.56
PRKDCP78527 PSMG4-206ENST00000438998 838 ntAPPRIS P1 TSL 2 BASIC18.54■□□□□ 0.56
PRKDCP78527 PFDN2-201ENST00000368010 677 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
PRKDCP78527 MSX1-201ENST00000382723 1939 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
PRKDCP78527 STK25-202ENST00000401869 2251 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
PRKDCP78527 INO80B-WBP1-202ENST00000452361 2040 ntAPPRIS P5 TSL 2 BASIC18.53■□□□□ 0.56
PRKDCP78527 TPRA1-201ENST00000296210 1725 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
PRKDCP78527 P2RX2-205ENST00000352418 1200 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
PRKDCP78527 MDFIC-206ENST00000448022 484 ntTSL 2 BASIC18.53■□□□□ 0.56
PRKDCP78527 AC120057.4-201ENST00000624722 1615 ntBASIC18.53■□□□□ 0.56
PRKDCP78527 IL17D-201ENST00000304920 1861 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
PRKDCP78527 RNF146-205ENST00000477776 762 ntTSL 3 BASIC18.52■□□□□ 0.56
PRKDCP78527 PPP4C-214ENST00000627746 1301 ntTSL 5 BASIC18.52■□□□□ 0.56
PRKDCP78527 FEZ1-201ENST00000278919 1748 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
PRKDCP78527 C1QTNF8-201ENST00000328449 1627 ntAPPRIS P1 TSL 5 BASIC18.52■□□□□ 0.56
PRKDCP78527 AC131281.2-201ENST00000520478 145 ntBASIC18.52■□□□□ 0.56
PRKDCP78527 PITX3-202ENST00000539804 1187 ntAPPRIS P1 TSL 5 BASIC18.52■□□□□ 0.55
PRKDCP78527 LINC01233-202ENST00000598832 568 ntTSL 2 BASIC18.52■□□□□ 0.55
PRKDCP78527 TMUB1-201ENST00000297533 1353 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
PRKDCP78527 CCND3-205ENST00000415497 1843 ntTSL 2 BASIC18.51■□□□□ 0.55
PRKDCP78527 CARNMT1-201ENST00000376830 1012 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
PRKDCP78527 OSCAR-206ENST00000391760 629 ntTSL 2 BASIC18.51■□□□□ 0.55
PRKDCP78527 ARHGEF7-AS2-201ENST00000425094 1239 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
PRKDCP78527 CAPNS1-205ENST00000588780 1035 ntAPPRIS ALT2 TSL 5 BASIC18.5■□□□□ 0.55
PRKDCP78527 P2RX2-202ENST00000348800 1222 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 17.7 ms