Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 AL359258.2-201ENST00000564063 1566 ntBASIC21.63■■□□□ 1.05
ABCA4P78363 AC009831.1-201ENST00000580420 1582 ntBASIC21.63■■□□□ 1.05
ABCA4P78363 FHL2-202ENST00000344213 1769 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
ABCA4P78363 CCND3-205ENST00000415497 1843 ntTSL 2 BASIC21.62■■□□□ 1.05
ABCA4P78363 PROCA1-201ENST00000301039 1566 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
ABCA4P78363 GPR25-201ENST00000304244 1224 ntAPPRIS P1 BASIC21.62■■□□□ 1.05
ABCA4P78363 MYCL-202ENST00000372816 1688 ntAPPRIS P3 TSL 2 BASIC21.62■■□□□ 1.05
ABCA4P78363 AP004833.2-201ENST00000532228 1454 ntBASIC21.62■■□□□ 1.05
ABCA4P78363 POU3F1-201ENST00000373012 2184 ntAPPRIS P1 BASIC21.61■■□□□ 1.05
ABCA4P78363 PHF20L1-207ENST00000395379 1998 ntTSL 5 BASIC21.61■■□□□ 1.05
ABCA4P78363 HOXB3-212ENST00000498678 2196 ntAPPRIS P1 TSL 2 BASIC21.61■■□□□ 1.05
ABCA4P78363 UBE2D2-205ENST00000505548 1113 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
ABCA4P78363 AC064853.2-201ENST00000641246 144 ntAPPRIS P1 BASIC21.61■■□□□ 1.05
ABCA4P78363 TYMP-201ENST00000252029 1630 ntAPPRIS P3 TSL 1 (best) BASIC21.61■■□□□ 1.05
ABCA4P78363 CBX4-201ENST00000269397 2664 ntAPPRIS P2 TSL 1 (best) BASIC21.61■■□□□ 1.05
ABCA4P78363 ADAMTS13-203ENST00000371910 1074 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
ABCA4P78363 PLA2G10-201ENST00000438167 1000 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
ABCA4P78363 GNPTG-204ENST00000527137 386 ntTSL 2 BASIC21.6■■□□□ 1.05
ABCA4P78363 SYT12-205ENST00000527043 1661 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
ABCA4P78363 IGFBP7-201ENST00000295666 1427 ntAPPRIS P3 TSL 1 (best) BASIC21.6■■□□□ 1.05
ABCA4P78363 SSBP4-201ENST00000270061 1768 ntAPPRIS P3 TSL 1 (best) BASIC21.6■■□□□ 1.05
ABCA4P78363 AC093536.1-201ENST00000569153 554 ntBASIC21.6■■□□□ 1.05
ABCA4P78363 ABCB10P3-201ENST00000561950 2166 ntBASIC21.6■■□□□ 1.05
ABCA4P78363 TSPAN33-201ENST00000486685 1863 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
ABCA4P78363 AL592293.1-201ENST00000502889 1188 ntBASIC21.59■■□□□ 1.05
ABCA4P78363 TBX2-AS1-203ENST00000590421 861 ntTSL 2 BASIC21.59■■□□□ 1.05
ABCA4P78363 MIR1-1HG-202ENST00000624914 1220 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
ABCA4P78363 CLEC11A-201ENST00000250340 1419 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
ABCA4P78363 AC148477.1-201ENST00000537720 476 ntTSL 3 BASIC21.59■■□□□ 1.05
ABCA4P78363 UBE2E3-213ENST00000602959 909 ntAPPRIS P1 TSL 5 BASIC21.59■■□□□ 1.05
ABCA4P78363 HES4-204ENST00000484667 667 ntTSL 3 BASIC21.58■■□□□ 1.05
ABCA4P78363 WBP1-202ENST00000393972 1325 ntTSL 2 BASIC21.58■■□□□ 1.05
ABCA4P78363 AL139393.2-201ENST00000608721 2025 ntBASIC21.58■■□□□ 1.05
ABCA4P78363 TBX1-201ENST00000329705 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC21.57■■□□□ 1.04
ABCA4P78363 PSMG3-202ENST00000288607 1391 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
ABCA4P78363 ZDHHC3-203ENST00000342790 1336 ntTSL 5 BASIC21.57■■□□□ 1.04
ABCA4P78363 DUX4L9-201ENST00000449051 1259 ntBASIC21.57■■□□□ 1.04
ABCA4P78363 FAHD1-204ENST00000615972 757 ntTSL 5 BASIC21.57■■□□□ 1.04
ABCA4P78363 C17orf49-201ENST00000439424 850 ntAPPRIS P3 TSL 1 (best) BASIC21.57■■□□□ 1.04
ABCA4P78363 KRTAP5-5-201ENST00000399676 933 ntAPPRIS P1 BASIC21.56■■□□□ 1.04
ABCA4P78363 RDX-210ENST00000530301 1549 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
ABCA4P78363 EIF5A-211ENST00000576930 1439 ntAPPRIS P1 TSL 5 BASIC21.56■■□□□ 1.04
ABCA4P78363 ABCB10P1-201ENST00000614297 2181 ntBASIC21.56■■□□□ 1.04
ABCA4P78363 AC055876.1-201ENST00000430589 895 ntTSL 2 BASIC21.55■■□□□ 1.04
ABCA4P78363 DUX4L18-201ENST00000553347 1267 ntBASIC21.55■■□□□ 1.04
ABCA4P78363 ZFAND2B-208ENST00000409594 2021 ntTSL 2 BASIC21.55■■□□□ 1.04
ABCA4P78363 HSPB6-202ENST00000587965 711 ntTSL 2 BASIC21.55■■□□□ 1.04
ABCA4P78363 AC131212.1-201ENST00000613771 668 ntBASIC21.55■■□□□ 1.04
ABCA4P78363 PTGER1-201ENST00000292513 1421 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
ABCA4P78363 NRBF2-202ENST00000435510 1816 ntTSL 2 BASIC21.55■■□□□ 1.04
ABCA4P78363 RALY-201ENST00000246194 1789 ntAPPRIS P4 TSL 1 (best) BASIC21.55■■□□□ 1.04
ABCA4P78363 F8A3-201ENST00000622749 1759 ntAPPRIS P1 BASIC21.55■■□□□ 1.04
ABCA4P78363 NTN3-201ENST00000293973 1986 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
ABCA4P78363 LY6H-201ENST00000342752 951 ntAPPRIS ALT2 TSL 1 (best) BASIC21.54■■□□□ 1.04
ABCA4P78363 LY6H-202ENST00000414417 1056 ntAPPRIS ALT2 TSL 1 (best) BASIC21.54■■□□□ 1.04
ABCA4P78363 LY6H-203ENST00000430474 925 ntAPPRIS P3 TSL 3 BASIC21.54■■□□□ 1.04
ABCA4P78363 PQLC3-201ENST00000295083 1830 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
ABCA4P78363 ZFAND2B-201ENST00000289528 1314 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
ABCA4P78363 CCNYL1-203ENST00000392209 1952 ntTSL 2 BASIC21.53■■□□□ 1.04
ABCA4P78363 COQ2-201ENST00000311461 1464 ntAPPRIS ALT2 TSL 5 BASIC21.53■■□□□ 1.04
ABCA4P78363 MFSD12-202ENST00000389395 2039 ntAPPRIS ALT2 TSL 1 (best) BASIC21.53■■□□□ 1.04
ABCA4P78363 GATA2-AS1-202ENST00000468377 1578 ntTSL 2 BASIC21.53■■□□□ 1.04
ABCA4P78363 PAOX-206ENST00000480071 1324 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
ABCA4P78363 CIB2-202ENST00000539011 1511 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
ABCA4P78363 TMEM151B-201ENST00000438774 1140 ntAPPRIS ALT2 TSL 3 BASIC21.52■■□□□ 1.04
ABCA4P78363 AC090241.2-201ENST00000602329 432 ntTSL 4 BASIC21.52■■□□□ 1.04
ABCA4P78363 GSR-206ENST00000546342 1482 ntAPPRIS ALT2 TSL 1 (best) BASIC21.52■■□□□ 1.04
ABCA4P78363 SMPD5-203ENST00000639008 1464 ntBASIC21.51■■□□□ 1.03
ABCA4P78363 COL13A1-210ENST00000517713 2007 ntAPPRIS ALT2 TSL 5 BASIC21.51■■□□□ 1.03
ABCA4P78363 PROSER2-202ENST00000379200 1232 ntAPPRIS ALT2 BASIC21.51■■□□□ 1.03
ABCA4P78363 AC016910.1-201ENST00000422799 1046 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
ABCA4P78363 AC009299.2-201ENST00000482477 511 ntBASIC21.51■■□□□ 1.03
ABCA4P78363 SOWAHD-201ENST00000343905 1552 ntAPPRIS P1 BASIC21.51■■□□□ 1.03
ABCA4P78363 AGAP3-211ENST00000473312 2039 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
ABCA4P78363 DDAH2-212ENST00000375789 1688 ntAPPRIS P1 TSL 2 BASIC21.51■■□□□ 1.03
ABCA4P78363 DDAH2-213ENST00000375792 1688 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
ABCA4P78363 TTC36-201ENST00000302783 874 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
ABCA4P78363 ARPC2-201ENST00000295685 1605 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
ABCA4P78363 PPP4C-201ENST00000279387 1407 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
ABCA4P78363 AC009511.2-201ENST00000545904 679 ntTSL 2 BASIC21.5■■□□□ 1.03
ABCA4P78363 ANGPTL6-203ENST00000589181 1579 ntTSL 5 BASIC21.5■■□□□ 1.03
ABCA4P78363 OXLD1-201ENST00000374741 620 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
ABCA4P78363 TIE1-210ENST00000538015 1140 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
ABCA4P78363 CAPNS1-204ENST00000587718 1558 ntAPPRIS ALT2 TSL 1 (best) BASIC21.49■■□□□ 1.03
ABCA4P78363 ABL1-201ENST00000318560 5766 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
ABCA4P78363 FKBP1A-205ENST00000439640 1583 ntTSL 3 BASIC21.48■■□□□ 1.03
ABCA4P78363 AC011448.1-201ENST00000555938 1100 ntAPPRIS P1 TSL 2 BASIC21.48■■□□□ 1.03
ABCA4P78363 SOHLH1-202ENST00000425225 1411 ntAPPRIS ALT2 TSL 5 BASIC21.47■■□□□ 1.03
ABCA4P78363 ZNF688-203ENST00000563276 1492 ntTSL 2 BASIC21.47■■□□□ 1.03
ABCA4P78363 MSRB1-206ENST00000622125 1363 ntAPPRIS ALT1 TSL 5 BASIC21.47■■□□□ 1.03
ABCA4P78363 ANKS1B-203ENST00000341752 2115 ntTSL 2 BASIC21.47■■□□□ 1.03
ABCA4P78363 HSPE1-201ENST00000233893 950 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
ABCA4P78363 PTPA-210ENST00000414510 1153 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
ABCA4P78363 AC026202.3-201ENST00000600805 1127 ntBASIC21.46■■□□□ 1.03
ABCA4P78363 KANSL1L-207ENST00000452086 2334 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
ABCA4P78363 RASGRP2-204ENST00000377487 642 ntTSL 2 BASIC21.45■■□□□ 1.02
ABCA4P78363 AC104002.3-202ENST00000557170 1100 ntTSL 3 BASIC21.45■■□□□ 1.02
ABCA4P78363 RAMP2-AS1-202ENST00000589716 1985 ntTSL 5 BASIC21.45■■□□□ 1.02
ABCA4P78363 AL121899.1-202ENST00000411839 536 ntTSL 5 BASIC21.45■■□□□ 1.02
ABCA4P78363 AC139795.1-203ENST00000515045 853 ntTSL 2 BASIC21.45■■□□□ 1.02
Retrieved 100 of 98,524 protein–RNA pairs in 36 ms