Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC20.08■□□□□ 0.81
CDX1P47902 PABPN1-202ENST00000397276 2768 ntAPPRIS ALT1 TSL 1 (best) BASIC20.08■□□□□ 0.8
CDX1P47902 PGM5P2-201ENST00000613141 1980 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
CDX1P47902 HNRNPAB-202ENST00000358344 1796 ntAPPRIS P4 TSL 1 (best) BASIC20.08■□□□□ 0.8
CDX1P47902 CFAP73-201ENST00000335621 1514 ntAPPRIS P1 TSL 5 BASIC20.07■□□□□ 0.8
CDX1P47902 MIR639-201ENST00000384974 98 ntBASIC20.07■□□□□ 0.8
CDX1P47902 HSF1-204ENST00000528838 2142 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
CDX1P47902 AC093323.1-202ENST00000635031 2045 ntBASIC20.07■□□□□ 0.8
CDX1P47902 SLC35D2-203ENST00000375259 1361 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
CDX1P47902 AKAP17A-202ENST00000381261 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.8
CDX1P47902 ZDHHC16-201ENST00000345745 1519 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
CDX1P47902 PICALM-224ENST00000630913 2261 ntTSL 5 BASIC20.06■□□□□ 0.8
CDX1P47902 AC016575.1-201ENST00000607026 382 ntBASIC20.06■□□□□ 0.8
CDX1P47902 CR559946.2-201ENST00000623684 991 ntBASIC20.06■□□□□ 0.8
CDX1P47902 FGF19-201ENST00000294312 2447 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CDX1P47902 SLC15A3-201ENST00000227880 2115 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CDX1P47902 EBPL-201ENST00000242827 914 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CDX1P47902 CHML-204ENST00000638121 920 ntTSL 2 BASIC20.05■□□□□ 0.8
CDX1P47902 SLC52A2-201ENST00000329994 1896 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CDX1P47902 RDX-210ENST00000530301 1549 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
CDX1P47902 FBXO45-201ENST00000311630 5899 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CDX1P47902 RUNX2-205ENST00000465038 1770 ntAPPRIS P4 TSL 5 BASIC20.03■□□□□ 0.8
CDX1P47902 GAL3ST1-205ENST00000406361 1819 ntAPPRIS P1 TSL 2 BASIC20.03■□□□□ 0.8
CDX1P47902 RRAD-202ENST00000420652 1476 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CDX1P47902 RHEB-201ENST00000262187 2075 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CDX1P47902 RANBP1-202ENST00000402752 1132 ntAPPRIS ALT1 TSL 1 (best) BASIC20.02■□□□□ 0.8
CDX1P47902 AC231981.1-201ENST00000450917 974 ntTSL 3 BASIC20.02■□□□□ 0.8
CDX1P47902 RPS2-202ENST00000526522 924 ntTSL 2 BASIC20.02■□□□□ 0.8
CDX1P47902 DCAF15-201ENST00000254337 2278 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
CDX1P47902 C1QTNF8-201ENST00000328449 1627 ntAPPRIS P1 TSL 5 BASIC20.02■□□□□ 0.79
CDX1P47902 RHOC-202ENST00000339083 1418 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
CDX1P47902 RUNX2-203ENST00000371436 1588 ntAPPRIS ALT2 TSL 5 BASIC20.01■□□□□ 0.79
CDX1P47902 KRT18-201ENST00000388835 1562 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
CDX1P47902 ING2-201ENST00000302327 1189 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
CDX1P47902 HYAL2-202ENST00000395139 2136 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
CDX1P47902 AL118558.1-203ENST00000553701 447 ntTSL 3 BASIC20.01■□□□□ 0.79
CDX1P47902 NPC2-207ENST00000555619 1035 ntAPPRIS P2 TSL 1 (best) BASIC20.01■□□□□ 0.79
CDX1P47902 ABHD17C-201ENST00000258884 2368 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
CDX1P47902 IFFO2-203ENST00000455833 6188 ntAPPRIS P1 TSL 5 BASIC20.01■□□□□ 0.79
CDX1P47902 IGFBP3-201ENST00000275521 2262 ntAPPRIS P3 TSL 1 (best) BASIC20■□□□□ 0.79
CDX1P47902 BCL7C-201ENST00000215115 1740 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
CDX1P47902 ADAT3-201ENST00000329478 1620 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
CDX1P47902 KLF3-AS1-202ENST00000440181 2368 ntTSL 2 BASIC20■□□□□ 0.79
CDX1P47902 BIN1-207ENST00000357970 2497 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
CDX1P47902 AC135983.2-203ENST00000454486 1613 ntBASIC19.99■□□□□ 0.79
CDX1P47902 PARD6A-201ENST00000219255 1248 ntAPPRIS P3 TSL 1 (best) BASIC19.99■□□□□ 0.79
CDX1P47902 HES6-205ENST00000409356 528 ntTSL 2 BASIC19.99■□□□□ 0.79
CDX1P47902 CAAP1-205ENST00000520187 773 ntTSL 5 BASIC19.99■□□□□ 0.79
CDX1P47902 MIR4449-201ENST00000578365 66 ntBASIC19.99■□□□□ 0.79
CDX1P47902 SERPING1-205ENST00000403558 2231 ntTSL 5 BASIC19.99■□□□□ 0.79
CDX1P47902 SP8-202ENST00000418710 1618 ntAPPRIS ALT2 TSL 1 (best) BASIC19.98■□□□□ 0.79
CDX1P47902 DNAJC21-201ENST00000342382 2309 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
CDX1P47902 NR2F6-201ENST00000291442 2404 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
CDX1P47902 MORF4L1-203ENST00000426013 1880 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
CDX1P47902 ANKRD16-201ENST00000191063 1567 ntTSL 3 BASIC19.97■□□□□ 0.79
CDX1P47902 RARA-203ENST00000394086 2008 ntTSL 2 BASIC19.97■□□□□ 0.79
CDX1P47902 C3orf80-201ENST00000326474 2718 ntAPPRIS P1 BASIC19.96■□□□□ 0.79
CDX1P47902 UBAC1-201ENST00000371756 1867 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
CDX1P47902 C2orf88-204ENST00000409870 1441 ntAPPRIS P1 TSL 2 BASIC19.96■□□□□ 0.79
CDX1P47902 C16orf59-202ENST00000483320 1709 ntAPPRIS ALT2 TSL 2 BASIC19.96■□□□□ 0.79
CDX1P47902 BIN1-205ENST00000351659 2365 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
CDX1P47902 SPATA5L1-208ENST00000638607 1863 ntTSL 2 BASIC19.95■□□□□ 0.78
CDX1P47902 FAAP20-202ENST00000378546 729 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
CDX1P47902 RARA-204ENST00000394089 2024 ntAPPRIS P1 TSL 2 BASIC19.95■□□□□ 0.78
CDX1P47902 AMZ2-201ENST00000359783 1722 ntTSL 5 BASIC19.94■□□□□ 0.78
CDX1P47902 TMEM185A-208ENST00000611119 2662 ntTSL 2 BASIC19.94■□□□□ 0.78
CDX1P47902 RASSF8-202ENST00000381352 2320 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
CDX1P47902 ANKRD54-201ENST00000215941 2184 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
CDX1P47902 KLC1-225ENST00000557575 2188 ntTSL 5 BASIC19.93■□□□□ 0.78
CDX1P47902 RPS2-201ENST00000343262 985 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
CDX1P47902 C16orf95-205ENST00000567970 1031 ntAPPRIS ALT2 TSL 5 BASIC19.93■□□□□ 0.78
CDX1P47902 WHAMMP2-203ENST00000563942 1603 ntBASIC19.93■□□□□ 0.78
CDX1P47902 GBX2-201ENST00000306318 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
CDX1P47902 SOX10-201ENST00000360880 2861 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
CDX1P47902 NKX2-1-204ENST00000522719 1417 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
CDX1P47902 MTCH1-202ENST00000373627 2057 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
CDX1P47902 MARCKSL1-201ENST00000329421 1699 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
CDX1P47902 MSANTD2-201ENST00000239614 2495 ntTSL 2 BASIC19.91■□□□□ 0.78
CDX1P47902 CTXN1-201ENST00000318978 1274 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
CDX1P47902 CHST11-202ENST00000546689 756 ntTSL 2 BASIC19.91■□□□□ 0.78
CDX1P47902 PSMG1-201ENST00000331573 2154 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
CDX1P47902 ATP8B2-201ENST00000368487 1523 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
CDX1P47902 HSD11B1L-202ENST00000339423 1660 ntAPPRIS P3 TSL 1 (best) BASIC19.91■□□□□ 0.78
CDX1P47902 BTBD2-201ENST00000255608 2649 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
CDX1P47902 MTMR1-202ENST00000370390 2755 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
CDX1P47902 TMEM147-202ENST00000392204 935 ntTSL 2 BASIC19.9■□□□□ 0.78
CDX1P47902 VEGFA-208ENST00000417285 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
CDX1P47902 AC092902.2-221ENST00000628476 965 ntTSL 5 BASIC19.9■□□□□ 0.78
CDX1P47902 SHF-208ENST00000560734 1731 ntTSL 3 BASIC19.9■□□□□ 0.78
CDX1P47902 CCDC160-202ENST00000517294 1790 ntAPPRIS P1 TSL 5 BASIC19.9■□□□□ 0.78
CDX1P47902 CTSA-203ENST00000372459 1972 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
CDX1P47902 DRD5P2-201ENST00000421395 2012 ntBASIC19.9■□□□□ 0.78
CDX1P47902 CPLX1-201ENST00000304062 2181 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
CDX1P47902 TADA2B-201ENST00000310074 4350 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
CDX1P47902 ACSS1-203ENST00000432802 2438 ntTSL 2 BASIC19.9■□□□□ 0.78
CDX1P47902 SHISA5-201ENST00000296444 2369 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
CDX1P47902 SLC16A11-201ENST00000308009 1803 ntAPPRIS P2 TSL 1 (best) BASIC19.89■□□□□ 0.77
CDX1P47902 MARCH11-201ENST00000332432 1741 ntAPPRIS P1 TSL 5 BASIC19.89■□□□□ 0.77
CDX1P47902 AP004833.2-201ENST00000532228 1454 ntBASIC19.89■□□□□ 0.77
CDX1P47902 STARD10-220ENST00000545082 1085 ntTSL 3 BASIC19.89■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 55.3 ms