Protein–RNA interactions for Protein: P16989

YBX3, Y-box-binding protein 3, humanhuman

Known RBP eCLIP

Length 372 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3P16989 PEPD-203ENST00000436370 1638 ntTSL 2 BASIC21.69■■□□□ 1.062e-7■■■■□ 25.5
YBX3P16989 PEPD-202ENST00000397032 1754 ntTSL 2 BASIC19.55■□□□□ 0.722e-7■■■■□ 25.5
YBX3P16989 PEPD-204ENST00000588328 581 ntTSL 318.39■□□□□ 0.532e-7■■■■□ 25.5
YBX3P16989 PEPD-201ENST00000244137 1910 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.512e-7■■■■□ 25.5
YBX3P16989 PEPD-213ENST00000609145 570 ntTSL 212.76□□□□□ -0.372e-7■■■■□ 25.5
YBX3P16989 PEPD-205ENST00000588719 484 ntTSL 312.57□□□□□ -0.42e-7■■■■□ 25.5
YBX3P16989 PEPD-208ENST00000590731 557 ntTSL 410.86□□□□□ -0.672e-7■■■■□ 25.5
YBX3P16989 BLVRA-202ENST00000402924 1161 ntAPPRIS P1 TSL 2 BASIC19.64■□□□□ 0.733e-8■■■■□ 25.5
YBX3P16989 BLVRA-201ENST00000265523 1071 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.43e-8■■■■□ 25.5
YBX3P16989 RPL3-201ENST00000216146 1442 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.51e-7■■■■□ 25.5
YBX3P16989 RPL3-203ENST00000402527 1205 ntTSL 524.26■■□□□ 1.471e-7■■■■□ 25.5
YBX3P16989 RPL3-212ENST00000467105 1396 ntTSL 1 (best)19.59■□□□□ 0.731e-7■■■■□ 25.5
YBX3P16989 RPL3-202ENST00000401609 1289 ntTSL 1 (best) BASIC18.94■□□□□ 0.621e-7■■■■□ 25.5
YBX3P16989 RPL3-215ENST00000481985 557 ntTSL 218.61■□□□□ 0.571e-7■■■■□ 25.5
YBX3P16989 RPL3-206ENST00000453303 916 ntTSL 518.3■□□□□ 0.521e-7■■■■□ 25.5
YBX3P16989 RPL3-211ENST00000465618 2108 ntTSL 1 (best)16.88■□□□□ 0.291e-7■■■■□ 25.5
YBX3P16989 RPL3-213ENST00000471290 481 ntTSL 215.79■□□□□ 0.121e-7■■■■□ 25.5
YBX3P16989 UBA2-207ENST00000592672 353 ntTSL 34.39□□□□□ -1.715e-8■■■■□ 25.5
YBX3P16989 NUDT16L1-204ENST00000586536 1406 ntTSL 2 BASIC28.07■■■□□ 2.089e-7■■■■□ 25.5
YBX3P16989 NUDT16L1-203ENST00000586252 922 ntTSL 3 BASIC24.37■■□□□ 1.499e-7■■■■□ 25.5
YBX3P16989 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC23.84■■□□□ 1.419e-7■■■■□ 25.5
YBX3P16989 NUDT16L1-201ENST00000304301 1349 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.49e-7■■■■□ 25.5
YBX3P16989 CENPN-207ENST00000564669 730 ntTSL 328.54■■■□□ 2.164e-9■■■■□ 25.5
YBX3P16989 CENPN-201ENST00000299572 1398 ntTSL 1 (best) BASIC27.62■■■□□ 2.014e-9■■■■□ 25.5
YBX3P16989 CENPN-202ENST00000305850 2481 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.334e-9■■■■□ 25.5
YBX3P16989 CENPN-204ENST00000428963 971 ntTSL 2 BASIC10.58□□□□□ -0.724e-9■■■■□ 25.5
YBX3P16989 CENPN-203ENST00000393335 1556 ntTSL 2 BASIC9.48□□□□□ -0.894e-9■■■■□ 25.5
YBX3P16989 CENPN-205ENST00000439957 1699 ntTSL 2 BASIC9.02□□□□□ -0.974e-9■■■■□ 25.5
YBX3P16989 ZNF92-205ENST00000488849 582 ntTSL 416■□□□□ 0.153e-8■■■■□ 25.5
YBX3P16989 ZNF92-202ENST00000357512 3124 ntAPPRIS ALT2 TSL 1 (best) BASIC8.87□□□□□ -0.993e-8■■■■□ 25.5
YBX3P16989 ZNF92-203ENST00000431504 2947 ntTSL 1 (best) BASIC6.9□□□□□ -1.33e-8■■■■□ 25.5
YBX3P16989 ZNF92-201ENST00000328747 3210 ntAPPRIS P3 TSL 1 (best) BASIC6.65□□□□□ -1.353e-8■■■■□ 25.5
YBX3P16989 ZNF92-204ENST00000450302 2957 ntTSL 1 (best) BASIC4.13□□□□□ -1.753e-8■■■■□ 25.5
YBX3P16989 TMEM33-207ENST00000513558 677 ntTSL 27.01□□□□□ -1.296e-8■■■■□ 25.5
YBX3P16989 SNX5-216ENST00000494401 656 ntTSL 56.56□□□□□ -1.365e-7■■■■□ 25.5
YBX3P16989 SNX5-207ENST00000474883 695 ntTSL 55.61□□□□□ -1.515e-7■■■■□ 25.5
YBX3P16989 SLC25A11-202ENST00000544061 952 ntTSL 3 BASIC26.21■■□□□ 1.791e-7■■■■□ 25.5
YBX3P16989 SLC25A11-205ENST00000576951 893 ntTSL 516.41■□□□□ 0.221e-7■■■■□ 25.5
YBX3P16989 KIAA0907-205ENST00000466520 549 ntTSL 316.19■□□□□ 0.188e-17■■■■□ 25.4
YBX3P16989 KIAA0907-204ENST00000465953 619 ntTSL 311.86□□□□□ -0.518e-17■■■■□ 25.4
YBX3P16989 KIAA0907-203ENST00000368321 2947 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.538e-17■■■■□ 25.4
YBX3P16989 KIAA0907-202ENST00000368320 4499 ntTSL 1 (best) BASIC11.6□□□□□ -0.558e-17■■■■□ 25.4
YBX3P16989 KIAA0907-207ENST00000478002 1065 ntTSL 57.66□□□□□ -1.188e-17■■■■□ 25.4
YBX3P16989 DGCR2-202ENST00000389262 4814 ntTSL 1 (best)14.65□□□□□ -0.068e-10■■■■□ 25.4
YBX3P16989 DGCR2-206ENST00000545799 4484 ntTSL 5 BASIC13.75□□□□□ -0.218e-10■■■■□ 25.4
YBX3P16989 DGCR2-201ENST00000263196 4480 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.218e-10■■■■□ 25.4
YBX3P16989 DGCR2-205ENST00000537045 4361 ntTSL 2 BASIC13.32□□□□□ -0.288e-10■■■■□ 25.4
YBX3P16989 ZNF22-201ENST00000298299 2551 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.516e-7■■■■□ 25.3
YBX3P16989 SLC25A11-201ENST00000225665 1897 ntAPPRIS P1 TSL 1 (best) BASIC24.7■■□□□ 1.541e-7■■■■□ 25.3
YBX3P16989 SLC25A11-204ENST00000574710 2176 ntTSL 222.45■■□□□ 1.181e-7■■■■□ 25.3
YBX3P16989 SHC2-205ENST00000590170 816 ntTSL 524.55■■□□□ 1.527e-9■■■■□ 25.3
YBX3P16989 NCSTN-206ENST00000435149 824 ntTSL 312.69□□□□□ -0.386e-7■■■■□ 25.3
YBX3P16989 C9orf78-204ENST00000461762 2390 ntTSL 215.32■□□□□ 0.042e-7■■■■□ 25.3
YBX3P16989 HIVEP1-203ENST00000442081 1044 ntTSL 326.1■■□□□ 1.778e-8■■■■□ 25.2
YBX3P16989 HIVEP1-209ENST00000627968 8924 ntTSL 5 BASIC12.31□□□□□ -0.448e-8■■■■□ 25.2
YBX3P16989 HIVEP1-201ENST00000379388 9027 ntAPPRIS P2 TSL 1 (best) BASIC12.24□□□□□ -0.458e-8■■■■□ 25.2
YBX3P16989 HIVEP1-208ENST00000541134 9023 ntAPPRIS ALT2 TSL 5 BASIC12.24□□□□□ -0.458e-8■■■■□ 25.2
YBX3P16989 THOP1-203ENST00000585338 761 ntTSL 333.75■■■□□ 2.996e-7■■■■□ 25.2
YBX3P16989 THOP1-204ENST00000585673 784 ntTSL 332.64■■■□□ 2.826e-7■■■■□ 25.2
YBX3P16989 THOP1-206ENST00000586780 421 ntTSL 324.27■■□□□ 1.486e-7■■■■□ 25.2
YBX3P16989 THOP1-201ENST00000307741 4804 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.556e-7■■■■□ 25.2
YBX3P16989 ITPR1-219ENST00000544951 4131 ntTSL 1 (best) BASIC11.42□□□□□ -0.586e-7■■■■□ 25.2
YBX3P16989 ITPR1-203ENST00000357086 9762 ntAPPRIS P3 TSL 1 (best) BASIC7.79□□□□□ -1.166e-7■■■■□ 25.2
YBX3P16989 ITPR1-204ENST00000443694 9513 ntAPPRIS ALT1 TSL 1 (best) BASIC7.64□□□□□ -1.196e-7■■■■□ 25.2
YBX3P16989 ITPR1-205ENST00000456211 9717 ntTSL 1 (best) BASIC7.42□□□□□ -1.226e-7■■■■□ 25.2
YBX3P16989 ITPR1-201ENST00000302640 10197 ntAPPRIS ALT1 TSL 5 BASIC7.41□□□□□ -1.226e-7■■■■□ 25.2
YBX3P16989 ITPR1-202ENST00000354582 10242 ntTSL 5 BASIC7.3□□□□□ -1.246e-7■■■■□ 25.2
YBX3P16989 SLC5A6-204ENST00000412471 917 ntTSL 537.78■■■■□ 3.642e-15■■■■□ 25.2
YBX3P16989 SLC5A6-206ENST00000426119 676 ntTSL 332.53■■■□□ 2.82e-15■■■■□ 25.2
YBX3P16989 SLC5A6-208ENST00000430186 599 ntTSL 421.82■■□□□ 1.082e-15■■■■□ 25.2
YBX3P16989 SLC5A6-205ENST00000414408 741 ntTSL 520.49■□□□□ 0.872e-15■■■■□ 25.2
YBX3P16989 SLC5A6-207ENST00000428518 570 ntTSL 420.35■□□□□ 0.852e-15■■■■□ 25.2
YBX3P16989 SLC5A6-202ENST00000401463 732 ntTSL 319.28■□□□□ 0.682e-15■■■■□ 25.2
YBX3P16989 SLC5A6-210ENST00000442731 542 ntTSL 418.38■□□□□ 0.532e-15■■■■□ 25.2
YBX3P16989 SLC5A6-211ENST00000445802 871 ntTSL 516.96■□□□□ 0.312e-15■■■■□ 25.2
YBX3P16989 SLC5A6-203ENST00000408041 2230 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.252e-15■■■■□ 25.2
YBX3P16989 SLC5A6-209ENST00000432106 725 ntTSL 313.71□□□□□ -0.212e-15■■■■□ 25.2
YBX3P16989 DYNLL1-203ENST00000392509 814 ntAPPRIS P1 TSL 3 BASIC23.35■■□□□ 1.332e-8■■■■□ 25.2
YBX3P16989 DYNLL1-201ENST00000242577 720 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.12e-8■■■■□ 25.2
YBX3P16989 DYNLL1-211ENST00000552870 595 ntTSL 2 BASIC14.95□□□□□ -0.022e-8■■■■□ 25.2
YBX3P16989 DYNLL1-202ENST00000392508 697 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.322e-8■■■■□ 25.2
YBX3P16989 IGF2BP1-204ENST00000505562 461 ntTSL 321.32■■□□□ 16e-7■■■■□ 25.2
YBX3P16989 POM121-203ENST00000434423 3750 ntAPPRIS ALT2 TSL 5 BASIC15.68■□□□□ 0.16e-10■■■■□ 25.2
YBX3P16989 POM121-201ENST00000358357 5320 ntAPPRIS P3 TSL 1 (best) BASIC14.07□□□□□ -0.166e-10■■■■□ 25.2
YBX3P16989 GTF3C2-201ENST00000264720 3882 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.542e-7■■■■□ 25.2
YBX3P16989 GTF3C2-202ENST00000359541 3992 ntAPPRIS P1 TSL 1 (best) BASIC9.57□□□□□ -0.882e-7■■■■□ 25.2
YBX3P16989 C20orf24-203ENST00000373852 1059 ntTSL 1 (best) BASIC32.81■■■□□ 2.843e-11■■■■□ 25.1
YBX3P16989 C20orf24-201ENST00000342422 896 ntTSL 2 BASIC32.39■■■□□ 2.783e-11■■■■□ 25.1
YBX3P16989 C20orf24-202ENST00000344795 1114 ntAPPRIS P1 TSL 1 (best) BASIC32.39■■■□□ 2.783e-11■■■■□ 25.1
YBX3P16989 C20orf24-206ENST00000492721 1044 ntTSL 229.88■■■□□ 2.373e-11■■■■□ 25.1
YBX3P16989 C20orf24-204ENST00000483815 1170 ntTSL 1 (best)24.92■■□□□ 1.583e-11■■■■□ 25.1
YBX3P16989 TGIF2-C20orf24-201ENST00000558530 918 ntAPPRIS P1 TSL 3 BASIC20.07■□□□□ 0.83e-11■■■■□ 25.1
YBX3P16989 C20orf24-207ENST00000494506 874 ntTSL 28.72□□□□□ -1.013e-11■■■■□ 25.1
YBX3P16989 APOBEC3B-202ENST00000335760 1359 ntTSL 1 (best)17.52■□□□□ 0.392e-7■■■■□ 25.1
YBX3P16989 APOBEC3B-204ENST00000407298 1282 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.352e-7■■■■□ 25.1
YBX3P16989 APOBEC3A-205ENST00000618553 1103 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.242e-7■■■■□ 25.1
YBX3P16989 APOBEC3B-201ENST00000333467 1533 ntAPPRIS P3 TSL 1 (best) BASIC14.4□□□□□ -0.12e-7■■■■□ 25.1
YBX3P16989 APOBEC3B-203ENST00000402182 1844 ntAPPRIS ALT2 TSL 2 BASIC13.65□□□□□ -0.222e-7■■■■□ 25.1
YBX3P16989 MRPL19-207ENST00000493686 720 ntTSL 222.19■■□□□ 1.141e-8■■■■□ 25.1
YBX3P16989 MRPL19-205ENST00000476622 744 ntTSL 219.17■□□□□ 0.661e-8■■■■□ 25.1
Retrieved 100 of 29,075 protein–RNA pairs in 659.6 ms