Protein–RNA interactions for Protein: P02462

COL4A1, Collagen alpha-1(IV) chain, humanhuman

Predictions only

Length 1,669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1P02462 ILDR2-208ENST00000529387 1238 ntTSL 5 BASIC31.12■■■□□ 2.57
COL4A1P02462 CIB2-202ENST00000539011 1511 ntTSL 1 (best) BASIC31.11■■■□□ 2.57
COL4A1P02462 ARMC10-211ENST00000541300 2266 ntTSL 1 (best) BASIC31.11■■■□□ 2.57
COL4A1P02462 GPR25-201ENST00000304244 1224 ntAPPRIS P1 BASIC31.11■■■□□ 2.57
COL4A1P02462 TSPY13P-201ENST00000338964 914 ntBASIC31.11■■■□□ 2.57
COL4A1P02462 TBX1-201ENST00000329705 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC31.11■■■□□ 2.57
COL4A1P02462 AL592293.1-201ENST00000502889 1188 ntBASIC31.1■■■□□ 2.57
COL4A1P02462 CGREF1-203ENST00000402394 1906 ntAPPRIS P2 TSL 2 BASIC31.1■■■□□ 2.57
COL4A1P02462 AC025884.2-201ENST00000553429 711 ntBASIC31.09■■■□□ 2.57
COL4A1P02462 HOMER3-207ENST00000594794 903 ntTSL 5 BASIC31.09■■■□□ 2.57
COL4A1P02462 TXNRD2-205ENST00000400525 1874 ntTSL 5 BASIC31.09■■■□□ 2.57
COL4A1P02462 SEC11C-204ENST00000587834 1202 ntAPPRIS P1 TSL 1 (best) BASIC31.09■■■□□ 2.57
COL4A1P02462 GNAS-AS1_1.1-201ENST00000621898 103 ntBASIC31.09■■■□□ 2.57
COL4A1P02462 PSMG3-202ENST00000288607 1391 ntAPPRIS P1 TSL 1 (best) BASIC31.08■■■□□ 2.57
COL4A1P02462 CHST14-202ENST00000559991 1968 ntTSL 5 BASIC31.08■■■□□ 2.57
COL4A1P02462 CUL4A-202ENST00000375440 2364 ntAPPRIS P1 TSL 1 (best) BASIC31.07■■■□□ 2.56
COL4A1P02462 GUK1-208ENST00000366728 842 ntTSL 2 BASIC31.07■■■□□ 2.56
COL4A1P02462 AC129492.7-201ENST00000622992 756 ntBASIC31.07■■■□□ 2.56
COL4A1P02462 AC126177.7-201ENST00000547904 679 ntBASIC31.06■■■□□ 2.56
COL4A1P02462 UBE2I-213ENST00000566587 1098 ntAPPRIS P1 TSL 2 BASIC31.06■■■□□ 2.56
COL4A1P02462 GATA2-AS1-202ENST00000468377 1578 ntTSL 2 BASIC31.06■■■□□ 2.56
COL4A1P02462 C16orf52-207ENST00000569656 1257 ntTSL 5 BASIC31.06■■■□□ 2.56
COL4A1P02462 TIMM29-201ENST00000270502 1425 ntAPPRIS P1 TSL 1 (best) BASIC31.05■■■□□ 2.56
COL4A1P02462 ST7-205ENST00000393446 2114 ntTSL 5 BASIC31.05■■■□□ 2.56
COL4A1P02462 F8A3-201ENST00000622749 1759 ntAPPRIS P1 BASIC31.05■■■□□ 2.56
COL4A1P02462 EMC10-202ENST00000376918 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC31.04■■■□□ 2.56
COL4A1P02462 IFI30-201ENST00000407280 1134 ntAPPRIS P1 TSL 1 (best) BASIC31.04■■■□□ 2.56
COL4A1P02462 AL121899.1-202ENST00000411839 536 ntTSL 5 BASIC31.04■■■□□ 2.56
COL4A1P02462 FAM120C-203ENST00000477084 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC31.04■■■□□ 2.56
COL4A1P02462 MXD3-208ENST00000513063 861 ntAPPRIS P1 TSL 5 BASIC31.04■■■□□ 2.56
COL4A1P02462 AL359258.2-201ENST00000564063 1566 ntBASIC31.04■■■□□ 2.56
COL4A1P02462 GLTP-201ENST00000318348 2356 ntAPPRIS P1 TSL 1 (best) BASIC31.04■■■□□ 2.56
COL4A1P02462 TMEM187-201ENST00000369982 1880 ntAPPRIS P1 TSL 1 (best) BASIC31.04■■■□□ 2.56
COL4A1P02462 DEXI-202ENST00000469379 1393 ntAPPRIS P1 TSL 2 BASIC31.04■■■□□ 2.56
COL4A1P02462 HMCES-202ENST00000389735 1763 ntAPPRIS P1 TSL 1 (best) BASIC31.03■■■□□ 2.56
COL4A1P02462 WBP1-202ENST00000393972 1325 ntTSL 2 BASIC31.03■■■□□ 2.56
COL4A1P02462 WBP1-201ENST00000233615 1294 ntAPPRIS P2 TSL 1 (best) BASIC31.03■■■□□ 2.56
COL4A1P02462 DSG2-202ENST00000585206 1081 ntTSL 2 BASIC31.03■■■□□ 2.56
COL4A1P02462 AGAP3-216ENST00000479901 1881 ntTSL 5 BASIC31.03■■■□□ 2.56
COL4A1P02462 RAD51-208ENST00000532743 1515 ntTSL 2 BASIC31.02■■■□□ 2.56
COL4A1P02462 NTN3-201ENST00000293973 1986 ntAPPRIS P1 TSL 1 (best) BASIC31.02■■■□□ 2.56
COL4A1P02462 PHOX2A-201ENST00000298231 1699 ntAPPRIS P1 TSL 1 (best) BASIC31■■■□□ 2.55
COL4A1P02462 GSR-206ENST00000546342 1482 ntAPPRIS ALT2 TSL 1 (best) BASIC31■■■□□ 2.55
COL4A1P02462 AP002414.2-202ENST00000590929 1450 ntBASIC31■■■□□ 2.55
COL4A1P02462 MRPL23-202ENST00000381519 643 ntAPPRIS P1 TSL 3 BASIC31■■■□□ 2.55
COL4A1P02462 MRPL23-205ENST00000397298 736 ntAPPRIS P1 TSL 1 (best) BASIC31■■■□□ 2.55
COL4A1P02462 RARRES2P1-201ENST00000474487 481 ntBASIC31■■■□□ 2.55
COL4A1P02462 PYY2-202ENST00000441253 1076 ntTSL 1 (best) BASIC31■■■□□ 2.55
COL4A1P02462 PRR5-ARHGAP8-202ENST00000361473 2013 ntTSL 5 BASIC30.99■■■□□ 2.55
COL4A1P02462 TYMP-201ENST00000252029 1630 ntAPPRIS P3 TSL 1 (best) BASIC30.99■■■□□ 2.55
COL4A1P02462 KDM4C-203ENST00000401787 1406 ntTSL 1 (best) BASIC30.99■■■□□ 2.55
COL4A1P02462 VIPR2-204ENST00000421760 717 ntTSL 3 BASIC30.98■■■□□ 2.55
COL4A1P02462 SPCS2P3-201ENST00000500401 656 ntBASIC30.98■■■□□ 2.55
COL4A1P02462 C17orf49-201ENST00000439424 850 ntAPPRIS P3 TSL 1 (best) BASIC30.97■■■□□ 2.55
COL4A1P02462 SDCCAG3-201ENST00000298537 2314 ntTSL 1 (best) BASIC30.97■■■□□ 2.55
COL4A1P02462 GIPC1-203ENST00000393033 1926 ntAPPRIS P1 TSL 1 (best) BASIC30.97■■■□□ 2.55
COL4A1P02462 PROSER2-202ENST00000379200 1232 ntAPPRIS ALT2 BASIC30.97■■■□□ 2.55
COL4A1P02462 CCND3-205ENST00000415497 1843 ntTSL 2 BASIC30.96■■■□□ 2.55
COL4A1P02462 TPRA1-202ENST00000355552 1933 ntAPPRIS P1 TSL 1 (best) BASIC30.96■■■□□ 2.55
COL4A1P02462 MMP28-203ENST00000612672 1092 ntTSL 1 (best) BASIC30.96■■■□□ 2.55
COL4A1P02462 KLF16-204ENST00000617223 1133 ntAPPRIS P1 TSL 1 (best) BASIC30.96■■■□□ 2.55
COL4A1P02462 RCC1L-202ENST00000614461 2419 ntTSL 1 (best) BASIC30.96■■■□□ 2.55
COL4A1P02462 AC133552.2-201ENST00000619106 1032 ntBASIC30.95■■■□□ 2.55
COL4A1P02462 NRXN1-228ENST00000628364 2444 ntTSL 5 BASIC30.95■■■□□ 2.54
COL4A1P02462 EIF5A-211ENST00000576930 1439 ntAPPRIS P1 TSL 5 BASIC30.95■■■□□ 2.54
COL4A1P02462 UBE2D2-205ENST00000505548 1113 ntTSL 1 (best) BASIC30.94■■■□□ 2.54
COL4A1P02462 FAM222B-205ENST00000577682 549 ntTSL 4 BASIC30.94■■■□□ 2.54
COL4A1P02462 AC026202.3-201ENST00000600805 1127 ntBASIC30.94■■■□□ 2.54
COL4A1P02462 SHISA8-202ENST00000621082 1405 ntAPPRIS P2 TSL 5 BASIC30.94■■■□□ 2.54
COL4A1P02462 HTR6-201ENST00000289753 1984 ntAPPRIS P1 TSL 1 (best) BASIC30.94■■■□□ 2.54
COL4A1P02462 NSMCE4A-201ENST00000369017 1224 ntTSL 1 (best) BASIC30.93■■■□□ 2.54
COL4A1P02462 ST7-202ENST00000323984 2142 ntTSL 5 BASIC30.93■■■□□ 2.54
COL4A1P02462 ST7-207ENST00000393449 2127 ntTSL 5 BASIC30.93■■■□□ 2.54
COL4A1P02462 REST-210ENST00000638187 1334 ntTSL 5 BASIC30.92■■■□□ 2.54
COL4A1P02462 SIGMAR1-203ENST00000378892 1743 ntTSL 2 BASIC30.92■■■□□ 2.54
COL4A1P02462 TBX2-AS1-203ENST00000590421 861 ntTSL 2 BASIC30.92■■■□□ 2.54
COL4A1P02462 RAP2CP1-202ENST00000605179 643 ntBASIC30.92■■■□□ 2.54
COL4A1P02462 SMPD5-203ENST00000639008 1464 ntBASIC30.92■■■□□ 2.54
COL4A1P02462 SPATA5L1-208ENST00000638607 1863 ntTSL 2 BASIC30.92■■■□□ 2.54
COL4A1P02462 KCTD17-202ENST00000403888 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC30.91■■■□□ 2.54
COL4A1P02462 TNFRSF12A-201ENST00000326577 1033 ntAPPRIS P1 TSL 1 (best) BASIC30.91■■■□□ 2.54
COL4A1P02462 AC093536.1-201ENST00000569153 554 ntBASIC30.91■■■□□ 2.54
COL4A1P02462 AC064853.2-201ENST00000641246 144 ntAPPRIS P1 BASIC30.91■■■□□ 2.54
COL4A1P02462 KANSL1L-207ENST00000452086 2334 ntTSL 1 (best) BASIC30.91■■■□□ 2.54
COL4A1P02462 HDGF-210ENST00000537739 2073 ntAPPRIS P1 TSL 1 (best) BASIC30.91■■■□□ 2.54
COL4A1P02462 COQ2-201ENST00000311461 1464 ntAPPRIS ALT2 TSL 5 BASIC30.91■■■□□ 2.54
COL4A1P02462 DUX4L9-201ENST00000449051 1259 ntBASIC30.9■■■□□ 2.54
COL4A1P02462 FGFRL1-205ENST00000510644 2304 ntAPPRIS P1 TSL 1 (best) BASIC30.9■■■□□ 2.54
COL4A1P02462 ABHD17B-202ENST00000377041 1312 ntAPPRIS P4 TSL 1 (best) BASIC30.9■■■□□ 2.54
COL4A1P02462 DERA-201ENST00000428559 1705 ntAPPRIS P1 TSL 1 (best) BASIC30.89■■■□□ 2.54
COL4A1P02462 PPP4C-201ENST00000279387 1407 ntAPPRIS P1 TSL 1 (best) BASIC30.89■■■□□ 2.54
COL4A1P02462 GNAS-207ENST00000354359 1975 ntTSL 1 (best) BASIC30.89■■■□□ 2.54
COL4A1P02462 GNAS-210ENST00000371085 1972 ntTSL 1 (best) BASIC30.89■■■□□ 2.54
COL4A1P02462 OXLD1-201ENST00000374741 620 ntAPPRIS P1 TSL 1 (best) BASIC30.89■■■□□ 2.54
COL4A1P02462 MDFIC-206ENST00000448022 484 ntTSL 2 BASIC30.89■■■□□ 2.54
COL4A1P02462 DUX4L18-201ENST00000553347 1267 ntBASIC30.89■■■□□ 2.54
COL4A1P02462 PSMG4-206ENST00000438998 838 ntAPPRIS P1 TSL 2 BASIC30.88■■■□□ 2.53
COL4A1P02462 PI4KAP2-202ENST00000450651 2294 ntTSL 5 BASIC30.87■■■□□ 2.53
COL4A1P02462 C12orf75-201ENST00000443585 1366 ntAPPRIS P1 TSL 2 BASIC30.86■■■□□ 2.53
COL4A1P02462 UBE2E3-213ENST00000602959 909 ntAPPRIS P1 TSL 5 BASIC30.86■■■□□ 2.53
Retrieved 100 of 98,524 protein–RNA pairs in 49.2 ms