Protein–RNA interactions for Protein: O88207

Col5a1, Collagen alpha-1(V) chain, mousemouse

Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col5a1O88207 Psmb8-201ENSMUST00000025196 1628 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Col5a1O88207 Gm26711-201ENSMUST00000180866 1833 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
Col5a1O88207 Hdac3-201ENSMUST00000043498 2004 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Col5a1O88207 Gm7544-201ENSMUST00000222426 828 ntAPPRIS P1 BASIC21.11■□□□□ 0.97
Col5a1O88207 Gm2415-202ENSMUST00000134688 401 ntTSL 2 BASIC21.11■□□□□ 0.97
Col5a1O88207 Tm2d2-201ENSMUST00000033961 1281 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Col5a1O88207 Prrx2-201ENSMUST00000041659 1441 ntAPPRIS P2 TSL 1 (best) BASIC21.1■□□□□ 0.97
Col5a1O88207 Sh3gl3-201ENSMUST00000032874 1647 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Col5a1O88207 Rps24-207ENSMUST00000224568 714 ntBASIC21.08■□□□□ 0.97
Col5a1O88207 Thra-202ENSMUST00000103139 2246 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
Col5a1O88207 Ablim1-208ENSMUST00000111544 2231 ntTSL 5 BASIC21.08■□□□□ 0.96
Col5a1O88207 Wbp1-208ENSMUST00000151393 837 ntTSL 3 BASIC21.08■□□□□ 0.96
Col5a1O88207 Dleu2-204ENSMUST00000182286 666 ntTSL 2 BASIC21.08■□□□□ 0.96
Col5a1O88207 Dleu2-213ENSMUST00000183245 637 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
Col5a1O88207 1700097N02Rik-201ENSMUST00000188852 845 ntTSL 3 BASIC21.08■□□□□ 0.96
Col5a1O88207 Coprs-201ENSMUST00000033839 793 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
Col5a1O88207 Rpl35-201ENSMUST00000080861 946 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
Col5a1O88207 Jmy-202ENSMUST00000220513 1843 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
Col5a1O88207 Cpsf4-205ENSMUST00000160629 1713 ntAPPRIS ALT1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Col5a1O88207 Mogs-201ENSMUST00000032114 2780 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Col5a1O88207 Plpp2-204ENSMUST00000166804 1566 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
Col5a1O88207 Pi16-201ENSMUST00000114699 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
Col5a1O88207 Gm15820-201ENSMUST00000201566 728 ntBASIC21.07■□□□□ 0.96
Col5a1O88207 Fam92a-208ENSMUST00000177837 1325 ntAPPRIS ALT2 TSL 5 BASIC21.07■□□□□ 0.96
Col5a1O88207 D030046N08Rik-201ENSMUST00000162318 1570 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
Col5a1O88207 Phf23-201ENSMUST00000018716 2006 ntAPPRIS P3 TSL 1 (best) BASIC21.07■□□□□ 0.96
Col5a1O88207 Lin7b-201ENSMUST00000003971 735 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Col5a1O88207 Terc-201ENSMUST00000082862 423 ntBASIC21.06■□□□□ 0.96
Col5a1O88207 Esrra-201ENSMUST00000025906 2242 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Col5a1O88207 Smox-206ENSMUST00000110183 1159 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
Col5a1O88207 AC102554.1-201ENSMUST00000216236 537 ntTSL 5 BASIC21.06■□□□□ 0.96
Col5a1O88207 Terf2-203ENSMUST00000116425 2471 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
Col5a1O88207 Msto1-202ENSMUST00000126245 1875 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Col5a1O88207 Gm14117-201ENSMUST00000122417 843 ntBASIC21.04■□□□□ 0.96
Col5a1O88207 Ppp1cb-206ENSMUST00000202078 383 ntTSL 5 BASIC21.04■□□□□ 0.96
Col5a1O88207 Dexi-201ENSMUST00000038281 1389 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Col5a1O88207 Plekha3-201ENSMUST00000111920 2534 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Col5a1O88207 Gm13429-202ENSMUST00000128242 692 ntTSL 3 BASIC21.03■□□□□ 0.96
Col5a1O88207 Ramp1-202ENSMUST00000165855 852 ntTSL 2 BASIC21.02■□□□□ 0.96
Col5a1O88207 Rgs7-206ENSMUST00000194555 2431 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.96
Col5a1O88207 Arl8a-201ENSMUST00000027684 1713 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Col5a1O88207 Ube2h-201ENSMUST00000094543 975 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
Col5a1O88207 Mir155hg-202ENSMUST00000185662 1362 ntTSL 5 BASIC21.02■□□□□ 0.95
Col5a1O88207 St7-208ENSMUST00000115419 2194 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
Col5a1O88207 Pde6d-203ENSMUST00000146220 879 ntTSL 2 BASIC21.01■□□□□ 0.95
Col5a1O88207 Gm39157-201ENSMUST00000212322 1180 ntTSL 5 BASIC21.01■□□□□ 0.95
Col5a1O88207 Syce2-202ENSMUST00000136026 1686 ntAPPRIS P3 TSL 1 (best) BASIC21.01■□□□□ 0.95
Col5a1O88207 Frat2-201ENSMUST00000059231 2161 ntAPPRIS P1 BASIC21.01■□□□□ 0.95
Col5a1O88207 A230005M16Rik-201ENSMUST00000137661 1605 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
Col5a1O88207 Gm6217-201ENSMUST00000222182 829 ntAPPRIS P1 BASIC21■□□□□ 0.95
Col5a1O88207 Camk2n2-201ENSMUST00000052939 1291 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Col5a1O88207 Gm7276-201ENSMUST00000097520 1252 ntAPPRIS P1 BASIC21■□□□□ 0.95
Col5a1O88207 Gm26533-201ENSMUST00000180550 1790 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
Col5a1O88207 A830010M20Rik-207ENSMUST00000162298 1408 ntTSL 5 BASIC20.99■□□□□ 0.95
Col5a1O88207 En1-201ENSMUST00000079721 2624 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Col5a1O88207 Hrasls-204ENSMUST00000162747 854 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Col5a1O88207 B3gat1-201ENSMUST00000115269 1665 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
Col5a1O88207 Reep6-202ENSMUST00000105354 2208 ntAPPRIS P3 TSL 1 (best) BASIC20.98■□□□□ 0.95
Col5a1O88207 Reep6-205ENSMUST00000105358 2208 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
Col5a1O88207 Snx21-203ENSMUST00000152471 1243 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
Col5a1O88207 Inafm1-201ENSMUST00000169612 1605 ntAPPRIS P1 BASIC20.97■□□□□ 0.95
Col5a1O88207 Srcap-211ENSMUST00000189136 1960 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
Col5a1O88207 Clptm1l-201ENSMUST00000022102 2340 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Col5a1O88207 H2afj-202ENSMUST00000203982 577 ntAPPRIS ALT1 TSL 3 BASIC20.97■□□□□ 0.95
Col5a1O88207 Nenf-201ENSMUST00000046770 742 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Col5a1O88207 Vdac1-202ENSMUST00000102758 2022 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Col5a1O88207 Arpc2-203ENSMUST00000113820 1439 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Col5a1O88207 Gm12905-201ENSMUST00000153814 658 ntTSL 2 BASIC20.96■□□□□ 0.95
Col5a1O88207 Arpp19-206ENSMUST00000168301 599 ntTSL 5 BASIC20.96■□□□□ 0.95
Col5a1O88207 Hoxb3os-202ENSMUST00000147410 1945 ntTSL 5 BASIC20.96■□□□□ 0.95
Col5a1O88207 Qdpr-201ENSMUST00000015950 1380 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Col5a1O88207 Ppp1ca-201ENSMUST00000046094 1379 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Col5a1O88207 Paqr3-202ENSMUST00000112968 1875 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
Col5a1O88207 Eid1-201ENSMUST00000164756 1691 ntAPPRIS P1 BASIC20.95■□□□□ 0.94
Col5a1O88207 Tmem120b-202ENSMUST00000111619 1256 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
Col5a1O88207 AC166358.2-201ENSMUST00000223403 734 ntTSL 5 BASIC20.94■□□□□ 0.94
Col5a1O88207 H1fx-201ENSMUST00000056403 1217 ntAPPRIS P1 BASIC20.94■□□□□ 0.94
Col5a1O88207 Fus-201ENSMUST00000077609 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
Col5a1O88207 Preb-209ENSMUST00000202567 1869 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
Col5a1O88207 Gm13594-201ENSMUST00000137582 476 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
Col5a1O88207 Slc35a2-211ENSMUST00000208640 486 ntTSL 5 BASIC20.94■□□□□ 0.94
Col5a1O88207 Polr1d-201ENSMUST00000050970 1196 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Col5a1O88207 Tmem42-201ENSMUST00000084733 1041 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Col5a1O88207 Runx2os1-201ENSMUST00000097320 792 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
Col5a1O88207 Nrep-202ENSMUST00000168890 2185 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Col5a1O88207 Ankrd49-205ENSMUST00000216037 1037 ntAPPRIS P1 TSL 2 BASIC20.93■□□□□ 0.94
Col5a1O88207 Hoxb3-201ENSMUST00000055334 1890 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Col5a1O88207 Igfbp3-202ENSMUST00000135887 1709 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Col5a1O88207 Rundc3b-202ENSMUST00000115378 1891 ntAPPRIS ALT2 TSL 5 BASIC20.92■□□□□ 0.94
Col5a1O88207 Isoc1-201ENSMUST00000025503 2563 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Col5a1O88207 Zfp422-201ENSMUST00000057540 2375 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Col5a1O88207 Srsf2-206ENSMUST00000190993 1326 ntAPPRIS P1 TSL 2 BASIC20.91■□□□□ 0.94
Col5a1O88207 Gm37847-201ENSMUST00000192163 1497 ntBASIC20.91■□□□□ 0.94
Col5a1O88207 Gm31748-201ENSMUST00000194938 1497 ntBASIC20.91■□□□□ 0.94
Col5a1O88207 Lor-201ENSMUST00000058150 1779 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Col5a1O88207 Anxa5-201ENSMUST00000029266 1731 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Col5a1O88207 Fam50b-202ENSMUST00000221037 1345 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Col5a1O88207 Becn1-216ENSMUST00000170502 725 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
Col5a1O88207 Gm45102-201ENSMUST00000207427 857 ntBASIC20.9■□□□□ 0.94
Col5a1O88207 AC161180.1-201ENSMUST00000223439 933 ntAPPRIS P1 BASIC20.9■□□□□ 0.94
Retrieved 100 of 76,532 protein–RNA pairs in 45 ms