Protein–RNA interactions for Protein: O75445

USH2A, Usherin, humanhuman

Predictions only

Length 5,202 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USH2AO75445 DCDC2C-201ENST00000399143 1476 ntAPPRIS P1 TSL 5 BASIC11.48□□□□□ -0.57
USH2AO75445 PTGER1-201ENST00000292513 1421 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
USH2AO75445 TSPY4-202ENST00000426950 1179 ntAPPRIS P5 TSL 5 BASIC11.48□□□□□ -0.57
USH2AO75445 ENKD1-201ENST00000243878 1579 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
USH2AO75445 PRELID2-204ENST00000505416 738 ntAPPRIS P2 TSL 3 BASIC11.47□□□□□ -0.57
USH2AO75445 CCDC194-202ENST00000636079 705 ntAPPRIS P1 TSL 5 BASIC11.47□□□□□ -0.57
USH2AO75445 PFDN2-201ENST00000368010 677 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
USH2AO75445 SOCS2-202ENST00000536696 1065 ntAPPRIS P1 TSL 2 BASIC11.47□□□□□ -0.57
USH2AO75445 PYCARD-202ENST00000350605 696 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
USH2AO75445 SDF2L1-201ENST00000248958 865 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
USH2AO75445 NALT1-201ENST00000429224 738 ntTSL 5 BASIC11.47□□□□□ -0.57
USH2AO75445 CDKN2A-208ENST00000498124 880 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
USH2AO75445 TMEM134-202ENST00000393877 823 ntTSL 1 (best) BASIC11.46□□□□□ -0.57
USH2AO75445 CDKN2A-214ENST00000579755 1283 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
USH2AO75445 AC005837.3-201ENST00000612163 286 ntBASIC11.46□□□□□ -0.57
USH2AO75445 CREM-229ENST00000474362 1030 ntTSL 2 BASIC11.46□□□□□ -0.57
USH2AO75445 LTC4S-205ENST00000486713 496 ntTSL 2 BASIC11.46□□□□□ -0.57
USH2AO75445 HNRNPAB-206ENST00000506339 1747 ntAPPRIS ALT2 TSL 5 BASIC11.46□□□□□ -0.57
USH2AO75445 C14orf80-211ENST00000450383 1107 ntAPPRIS ALT2 TSL 5 BASIC11.46□□□□□ -0.58
USH2AO75445 RNF146-205ENST00000477776 762 ntTSL 3 BASIC11.46□□□□□ -0.58
USH2AO75445 LMAN2-208ENST00000515209 1149 ntAPPRIS ALT2 TSL 3 BASIC11.46□□□□□ -0.58
USH2AO75445 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC11.46□□□□□ -0.58
USH2AO75445 PPP4C-214ENST00000627746 1301 ntTSL 5 BASIC11.46□□□□□ -0.58
USH2AO75445 TOMM40-201ENST00000252487 1707 ntAPPRIS P2 TSL 1 (best) BASIC11.46□□□□□ -0.58
USH2AO75445 TOMM40-202ENST00000405636 1709 ntAPPRIS P2 TSL 1 (best) BASIC11.46□□□□□ -0.58
USH2AO75445 IL1R1-201ENST00000409288 1735 ntTSL 5 BASIC11.46□□□□□ -0.58
USH2AO75445 TAZ-201ENST00000369776 1596 ntTSL 1 (best) BASIC11.46□□□□□ -0.58
USH2AO75445 ANGPTL6-203ENST00000589181 1579 ntTSL 5 BASIC11.46□□□□□ -0.58
USH2AO75445 CARNMT1-201ENST00000376830 1012 ntTSL 1 (best) BASIC11.46□□□□□ -0.58
USH2AO75445 GLRB-203ENST00000509282 1757 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
USH2AO75445 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
USH2AO75445 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC11.45□□□□□ -0.58
USH2AO75445 GUCD1-207ENST00000447813 895 ntTSL 3 BASIC11.45□□□□□ -0.58
USH2AO75445 AC126177.7-201ENST00000547904 679 ntBASIC11.45□□□□□ -0.58
USH2AO75445 UCK1-201ENST00000372208 2063 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
USH2AO75445 MTERF3-201ENST00000287025 1409 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
USH2AO75445 FSD1L-204ENST00000469022 1836 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
USH2AO75445 UNC93B8-201ENST00000511903 705 ntBASIC11.44□□□□□ -0.58
USH2AO75445 TYMP-201ENST00000252029 1630 ntAPPRIS P3 TSL 1 (best) BASIC11.44□□□□□ -0.58
USH2AO75445 PROCA1-201ENST00000301039 1566 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
USH2AO75445 MDFIC-206ENST00000448022 484 ntTSL 2 BASIC11.44□□□□□ -0.58
USH2AO75445 CD63-201ENST00000257857 1070 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
USH2AO75445 AL357078.1-201ENST00000448344 310 ntTSL 4 BASIC11.44□□□□□ -0.58
USH2AO75445 AL445237.1-202ENST00000604581 425 ntTSL 5 BASIC11.44□□□□□ -0.58
USH2AO75445 TUBBP5-204ENST00000635438 565 ntTSL 4 BASIC11.44□□□□□ -0.58
USH2AO75445 LINC01925-201ENST00000579492 500 ntTSL 5 BASIC11.44□□□□□ -0.58
USH2AO75445 MIR4508-201ENST00000584178 70 ntBASIC11.44□□□□□ -0.58
USH2AO75445 AC139795.1-203ENST00000515045 853 ntTSL 2 BASIC11.43□□□□□ -0.58
USH2AO75445 MSRB1-206ENST00000622125 1363 ntAPPRIS ALT1 TSL 5 BASIC11.43□□□□□ -0.58
USH2AO75445 ARHGEF7-AS2-201ENST00000425094 1239 ntTSL 1 (best) BASIC11.43□□□□□ -0.58
USH2AO75445 AC135983.2-203ENST00000454486 1613 ntBASIC11.43□□□□□ -0.58
USH2AO75445 PELI3-203ENST00000524466 1671 ntTSL 1 (best) BASIC11.43□□□□□ -0.58
USH2AO75445 BOD1-202ENST00000311086 1562 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
USH2AO75445 LINC01233-202ENST00000598832 568 ntTSL 2 BASIC11.43□□□□□ -0.58
USH2AO75445 ACBD4-216ENST00000619916 1276 ntTSL 5 BASIC11.43□□□□□ -0.58
USH2AO75445 TMUB1-201ENST00000297533 1353 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
USH2AO75445 AC127502.1-201ENST00000399971 1502 ntBASIC11.42□□□□□ -0.58
USH2AO75445 AC103702.2-201ENST00000433510 1270 ntTSL 2 BASIC11.42□□□□□ -0.58
USH2AO75445 PEX7-203ENST00000541292 945 ntTSL 5 BASIC11.42□□□□□ -0.58
USH2AO75445 AL117209.1-201ENST00000560931 828 ntTSL 3 BASIC11.42□□□□□ -0.58
USH2AO75445 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC11.42□□□□□ -0.58
USH2AO75445 AVEN-201ENST00000306730 1605 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
USH2AO75445 GUSB-202ENST00000421103 1742 ntTSL 2 BASIC11.42□□□□□ -0.58
USH2AO75445 AC105285.1-201ENST00000500914 2036 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
USH2AO75445 VSTM2A-202ENST00000402613 1076 ntTSL 2 BASIC11.42□□□□□ -0.58
USH2AO75445 MAST4-206ENST00000406374 1066 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
USH2AO75445 NKIRAS2-208ENST00000462043 585 ntTSL 4 BASIC11.42□□□□□ -0.58
USH2AO75445 AC105935.1-201ENST00000424174 422 ntTSL 3 BASIC11.41□□□□□ -0.58
USH2AO75445 ZNRF2P3-201ENST00000424200 374 ntBASIC11.41□□□□□ -0.58
USH2AO75445 C1QL1-201ENST00000253407 1295 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
USH2AO75445 HOXC-AS1-201ENST00000505700 548 ntTSL 2 BASIC11.41□□□□□ -0.58
USH2AO75445 PKIG-205ENST00000372891 1443 ntAPPRIS P1 TSL 2 BASIC11.41□□□□□ -0.58
USH2AO75445 GAL3ST1-204ENST00000402369 1712 ntAPPRIS P1 TSL 3 BASIC11.41□□□□□ -0.58
USH2AO75445 TMPO-AS1-201ENST00000546421 738 ntTSL 5 BASIC11.41□□□□□ -0.58
USH2AO75445 AC018755.3-202ENST00000596210 929 ntBASIC11.41□□□□□ -0.58
USH2AO75445 ABHD17A-202ENST00000292577 1757 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
USH2AO75445 AC120057.4-201ENST00000624722 1615 ntBASIC11.41□□□□□ -0.58
USH2AO75445 HES7-202ENST00000541682 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC11.41□□□□□ -0.58
USH2AO75445 AC010864.1-201ENST00000609407 1511 ntBASIC11.41□□□□□ -0.58
USH2AO75445 MPC1-201ENST00000341756 976 ntTSL 1 (best) BASIC11.41□□□□□ -0.58
USH2AO75445 MPC1-206ENST00000621630 977 ntAPPRIS ALT1 TSL 5 BASIC11.41□□□□□ -0.58
USH2AO75445 MPC1-207ENST00000621685 1192 ntTSL 5 BASIC11.41□□□□□ -0.58
USH2AO75445 COQ2-201ENST00000311461 1464 ntAPPRIS ALT2 TSL 5 BASIC11.41□□□□□ -0.58
USH2AO75445 IDNK-201ENST00000376417 511 ntTSL 5 BASIC11.4□□□□□ -0.58
USH2AO75445 IDNK-202ENST00000376419 692 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
USH2AO75445 GRASP-206ENST00000552049 1688 ntTSL 1 (best) BASIC11.4□□□□□ -0.58
USH2AO75445 GUK1-205ENST00000366722 850 ntTSL 3 BASIC11.4□□□□□ -0.58
USH2AO75445 AC131281.2-201ENST00000520478 145 ntBASIC11.4□□□□□ -0.58
USH2AO75445 TK2-216ENST00000564917 1156 ntTSL 3 BASIC11.4□□□□□ -0.58
USH2AO75445 SUMF1-205ENST00000458465 1102 ntTSL 2 BASIC11.4□□□□□ -0.58
USH2AO75445 KLRG2-202ENST00000393039 1148 ntTSL 5 BASIC11.39□□□□□ -0.59
USH2AO75445 TMEM120A-214ENST00000493111 1456 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
USH2AO75445 AP001267.3-203ENST00000554407 579 ntTSL 2 BASIC11.39□□□□□ -0.59
USH2AO75445 AL161658.1-201ENST00000623641 1967 ntBASIC11.39□□□□□ -0.59
USH2AO75445 AC008105.2-203ENST00000591361 550 ntTSL 4 BASIC11.39□□□□□ -0.59
USH2AO75445 MAPK8IP1P1-201ENST00000574657 1439 ntBASIC11.38□□□□□ -0.59
USH2AO75445 CLTB-201ENST00000310418 1215 ntAPPRIS P4 TSL 1 (best) BASIC11.38□□□□□ -0.59
USH2AO75445 CLTB-202ENST00000345807 1161 ntAPPRIS ALT1 TSL 1 (best) BASIC11.38□□□□□ -0.59
USH2AO75445 VPS37D-201ENST00000324941 1624 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
USH2AO75445 GATA2-AS1-202ENST00000468377 1578 ntTSL 2 BASIC11.38□□□□□ -0.59
Retrieved 100 of 98,524 protein–RNA pairs in 37.1 ms