Protein–RNA interactions for Protein: O00479

HMGN4, High mobility group nucleosome-binding domain-containing protein 4, humanhuman

Predictions only

Length 90 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN4O00479 DNAJB2-202ENST00000392086 1946 ntAPPRIS P1 TSL 2 BASIC23.24■■□□□ 1.31
HMGN4O00479 AL121987.2-201ENST00000418602 1578 ntTSL 2 BASIC23.24■■□□□ 1.31
HMGN4O00479 NPHP3-202ENST00000383282 782 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
HMGN4O00479 RASSF5-204ENST00000580449 1932 ntTSL 1 (best) BASIC23.23■■□□□ 1.31
HMGN4O00479 C11orf95-204ENST00000546282 390 ntTSL 3 BASIC23.23■■□□□ 1.31
HMGN4O00479 ZNF692-201ENST00000306601 1931 ntAPPRIS P3 TSL 1 (best) BASIC23.23■■□□□ 1.31
HMGN4O00479 TSPAN3-203ENST00000424443 1530 ntTSL 2 BASIC23.23■■□□□ 1.31
HMGN4O00479 TMEM55B-202ENST00000398020 1696 ntAPPRIS ALT1 TSL 1 (best) BASIC23.22■■□□□ 1.31
HMGN4O00479 SAE1-209ENST00000598840 1831 ntTSL 5 BASIC23.22■■□□□ 1.31
HMGN4O00479 NSMCE4A-201ENST00000369017 1224 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
HMGN4O00479 PABPC1L2B-AS1-201ENST00000416989 1167 ntTSL 3 BASIC23.22■■□□□ 1.31
HMGN4O00479 AL662864.1-201ENST00000454388 1167 ntTSL 3 BASIC23.22■■□□□ 1.31
HMGN4O00479 AL451007.3-201ENST00000640271 588 ntAPPRIS P1 BASIC23.22■■□□□ 1.31
HMGN4O00479 CNNM2-201ENST00000369875 2059 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
HMGN4O00479 PARD6A-202ENST00000458121 1260 ntAPPRIS ALT1 TSL 1 (best) BASIC23.21■■□□□ 1.31
HMGN4O00479 TOP1MT-208ENST00000519148 1868 ntTSL 2 BASIC23.21■■□□□ 1.31
HMGN4O00479 PLBD2-202ENST00000545182 2321 ntTSL 2 BASIC23.21■■□□□ 1.31
HMGN4O00479 RNF175-201ENST00000347063 1604 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
HMGN4O00479 RPS2-210ENST00000530225 765 ntTSL 2 BASIC23.2■■□□□ 1.3
HMGN4O00479 LINC01971-201ENST00000617888 1048 ntBASIC23.2■■□□□ 1.3
HMGN4O00479 ZNF706-207ENST00000519882 959 ntAPPRIS P1 TSL 3 BASIC23.19■■□□□ 1.3
HMGN4O00479 ZNF706-213ENST00000521272 732 ntAPPRIS P1 TSL 5 BASIC23.19■■□□□ 1.3
HMGN4O00479 FKBP1A-210ENST00000614856 562 ntTSL 2 BASIC23.19■■□□□ 1.3
HMGN4O00479 CHML-204ENST00000638121 920 ntTSL 2 BASIC23.19■■□□□ 1.3
HMGN4O00479 PRKAR1B-203ENST00000403562 1917 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
HMGN4O00479 GPS1-204ENST00000392358 2276 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
HMGN4O00479 TSEN34-204ENST00000429671 1912 ntTSL 2 BASIC23.18■■□□□ 1.3
HMGN4O00479 REPIN1-204ENST00000466559 1022 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
HMGN4O00479 C19orf47-202ENST00000392035 2126 ntAPPRIS ALT2 TSL 1 (best) BASIC23.18■■□□□ 1.3
HMGN4O00479 GATA4-209ENST00000622443 1982 ntTSL 5 BASIC23.18■■□□□ 1.3
HMGN4O00479 RHOC-202ENST00000339083 1418 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
HMGN4O00479 GSR-205ENST00000541648 1410 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
HMGN4O00479 AP004609.3-201ENST00000610705 1884 ntBASIC23.16■■□□□ 1.3
HMGN4O00479 ARMC10-205ENST00000428183 2445 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
HMGN4O00479 SLC12A2-202ENST00000343225 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC23.16■■□□□ 1.3
HMGN4O00479 OTUD5-202ENST00000376488 2692 ntAPPRIS ALT1 TSL 1 (best) BASIC23.16■■□□□ 1.3
HMGN4O00479 CDC16-211ENST00000628084 2058 ntTSL 5 BASIC23.15■■□□□ 1.3
HMGN4O00479 TRAM2-AS1-201ENST00000453216 664 ntTSL 3 BASIC23.15■■□□□ 1.3
HMGN4O00479 ANKS3-203ENST00000450067 2272 ntTSL 5 BASIC23.15■■□□□ 1.3
HMGN4O00479 WHAMMP3-201ENST00000611636 1609 ntBASIC23.15■■□□□ 1.3
HMGN4O00479 CFAP99-207ENST00000635017 2298 ntTSL 5 BASIC23.15■■□□□ 1.3
HMGN4O00479 CRTAP-202ENST00000449224 1811 ntAPPRIS ALT2 TSL 2 BASIC23.15■■□□□ 1.3
HMGN4O00479 SLC35D2-203ENST00000375259 1361 ntTSL 1 (best) BASIC23.14■■□□□ 1.3
HMGN4O00479 AC091060.1-201ENST00000623524 1766 ntBASIC23.14■■□□□ 1.3
HMGN4O00479 ARHGEF7-206ENST00000375741 5525 ntTSL 1 (best) BASIC23.14■■□□□ 1.3
HMGN4O00479 DDN-AS1-203ENST00000552284 934 ntTSL 3 BASIC23.14■■□□□ 1.29
HMGN4O00479 BCL7C-202ENST00000380317 2409 ntTSL 1 (best) BASIC23.14■■□□□ 1.29
HMGN4O00479 SPTSSA-201ENST00000298130 2777 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
HMGN4O00479 TLE6-201ENST00000246112 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC23.14■■□□□ 1.29
HMGN4O00479 DEDD-212ENST00000545495 2329 ntAPPRIS P1 TSL 3 BASIC23.13■■□□□ 1.29
HMGN4O00479 MPST-206ENST00000429360 1331 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
HMGN4O00479 ARHGDIG-201ENST00000219409 949 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
HMGN4O00479 DUX4L13-201ENST00000554103 1267 ntBASIC23.12■■□□□ 1.29
HMGN4O00479 DUX4L15-201ENST00000611059 1267 ntBASIC23.12■■□□□ 1.29
HMGN4O00479 DUX4L23-201ENST00000615195 1269 ntBASIC23.12■■□□□ 1.29
HMGN4O00479 DUX4L24-201ENST00000617576 1269 ntBASIC23.12■■□□□ 1.29
HMGN4O00479 DUX4L22-201ENST00000618238 1269 ntBASIC23.12■■□□□ 1.29
HMGN4O00479 DUX4L20-201ENST00000619712 1269 ntBASIC23.12■■□□□ 1.29
HMGN4O00479 DUX4L21-201ENST00000622058 1269 ntBASIC23.12■■□□□ 1.29
HMGN4O00479 DUX4L10-201ENST00000622460 1267 ntBASIC23.12■■□□□ 1.29
HMGN4O00479 DUX4L25-201ENST00000624915 1269 ntBASIC23.12■■□□□ 1.29
HMGN4O00479 BHLHE23-201ENST00000370346 1057 ntAPPRIS P1 BASIC23.11■■□□□ 1.29
HMGN4O00479 G6PC3-201ENST00000269097 1533 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
HMGN4O00479 ARPC2-201ENST00000295685 1605 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
HMGN4O00479 PIP4K2B-204ENST00000619039 5734 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
HMGN4O00479 AC096888.1-201ENST00000487097 565 ntTSL 4 BASIC23.1■■□□□ 1.29
HMGN4O00479 SPATA33-209ENST00000579310 1490 ntAPPRIS ALT2 TSL 2 BASIC23.1■■□□□ 1.29
HMGN4O00479 ANKRD9-205ENST00000560748 1413 ntAPPRIS P1 TSL 2 BASIC23.09■■□□□ 1.29
HMGN4O00479 IGFBPL1-201ENST00000377694 1093 ntAPPRIS P1 TSL 2 BASIC23.09■■□□□ 1.29
HMGN4O00479 BTBD6-204ENST00000463376 2195 ntAPPRIS ALT2 TSL 2 BASIC23.08■■□□□ 1.29
HMGN4O00479 SLC35A2-207ENST00000445167 1739 ntTSL 1 (best) BASIC23.08■■□□□ 1.29
HMGN4O00479 RRAD-202ENST00000420652 1476 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
HMGN4O00479 TTC3-225ENST00000540756 2025 ntTSL 2 BASIC23.08■■□□□ 1.28
HMGN4O00479 AC142472.1-201ENST00000612013 1741 ntBASIC23.08■■□□□ 1.28
HMGN4O00479 EBPL-201ENST00000242827 914 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
HMGN4O00479 MLEC-202ENST00000412616 841 ntTSL 3 BASIC23.07■■□□□ 1.28
HMGN4O00479 DUX4L11-201ENST00000611504 1267 ntBASIC23.07■■□□□ 1.28
HMGN4O00479 DUX4L12-201ENST00000614593 1267 ntBASIC23.07■■□□□ 1.28
HMGN4O00479 DUX4L14-201ENST00000621227 1267 ntBASIC23.07■■□□□ 1.28
HMGN4O00479 LINC00588-201ENST00000521663 1875 ntTSL 2 BASIC23.07■■□□□ 1.28
HMGN4O00479 PPAN-202ENST00000393793 1575 ntTSL 5 BASIC23.06■■□□□ 1.28
HMGN4O00479 EBF4-210ENST00000609451 2012 ntAPPRIS ALT1 TSL 5 BASIC23.06■■□□□ 1.28
HMGN4O00479 FEZ2-204ENST00000405912 1931 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
HMGN4O00479 FUS-202ENST00000380244 1818 ntAPPRIS ALT2 TSL 1 (best) BASIC23.06■■□□□ 1.28
HMGN4O00479 ABHD12-202ENST00000376542 1725 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
HMGN4O00479 ARHGEF7-205ENST00000375739 5375 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
HMGN4O00479 TMEM185A-207ENST00000600449 2840 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
HMGN4O00479 TSPAN4-207ENST00000397411 1025 ntAPPRIS P1 TSL 2 BASIC23.05■■□□□ 1.28
HMGN4O00479 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC23.05■■□□□ 1.28
HMGN4O00479 CAAP1-205ENST00000520187 773 ntTSL 5 BASIC23.05■■□□□ 1.28
HMGN4O00479 CHST11-202ENST00000546689 756 ntTSL 2 BASIC23.05■■□□□ 1.28
HMGN4O00479 SOWAHD-201ENST00000343905 1552 ntAPPRIS P1 BASIC23.05■■□□□ 1.28
HMGN4O00479 BAMBI-201ENST00000375533 1877 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
HMGN4O00479 TBX1-201ENST00000329705 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC23.05■■□□□ 1.28
HMGN4O00479 HSPB11-201ENST00000194214 915 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
HMGN4O00479 AC010907.1-201ENST00000441632 807 ntTSL 3 BASIC23.04■■□□□ 1.28
HMGN4O00479 ZNRF2P2-203ENST00000454624 420 ntBASIC23.04■■□□□ 1.28
HMGN4O00479 LAPTM4B-203ENST00000521545 915 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
HMGN4O00479 PAPD7-201ENST00000230859 5459 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
HMGN4O00479 ACSS1-202ENST00000376726 2244 ntTSL 2 BASIC23.04■■□□□ 1.28
Retrieved 100 of 98,524 protein–RNA pairs in 115.7 ms