Protein–RNA interactions for Protein: Q9Y5X4

NR2E3, Photoreceptor-specific nuclear receptor, humanhuman

Predictions only

Length 410 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NR2E3Q9Y5X4 JMJD8-216ENST00000609261 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC28.3■■■□□ 2.12
NR2E3Q9Y5X4 MPC1-201ENST00000341756 976 ntTSL 1 (best) BASIC28.3■■■□□ 2.12
NR2E3Q9Y5X4 YBX1P4-201ENST00000392794 808 ntBASIC28.3■■■□□ 2.12
NR2E3Q9Y5X4 AC053527.1-201ENST00000502790 685 ntTSL 3 BASIC28.3■■■□□ 2.12
NR2E3Q9Y5X4 AC010980.1-201ENST00000587192 1142 ntBASIC28.3■■■□□ 2.12
NR2E3Q9Y5X4 MPC1-206ENST00000621630 977 ntAPPRIS ALT1 TSL 5 BASIC28.3■■■□□ 2.12
NR2E3Q9Y5X4 MPC1-207ENST00000621685 1192 ntTSL 5 BASIC28.3■■■□□ 2.12
NR2E3Q9Y5X4 GUSB-202ENST00000421103 1742 ntTSL 2 BASIC28.29■■■□□ 2.12
NR2E3Q9Y5X4 CHKB-AS1-201ENST00000380711 578 ntTSL 2 BASIC28.29■■■□□ 2.12
NR2E3Q9Y5X4 OR2A1-AS1-204ENST00000470435 602 ntBASIC28.29■■■□□ 2.12
NR2E3Q9Y5X4 C16orf52-207ENST00000569656 1257 ntTSL 5 BASIC28.29■■■□□ 2.12
NR2E3Q9Y5X4 GATA6-202ENST00000581694 2057 ntAPPRIS P1 TSL 1 (best) BASIC28.29■■■□□ 2.12
NR2E3Q9Y5X4 TPI1-210ENST00000613953 1460 ntTSL 1 (best) BASIC28.28■■■□□ 2.12
NR2E3Q9Y5X4 AC105285.1-201ENST00000500914 2036 ntTSL 1 (best) BASIC28.28■■■□□ 2.12
NR2E3Q9Y5X4 GLT8D1-201ENST00000266014 1849 ntAPPRIS P1 TSL 1 (best) BASIC28.28■■■□□ 2.12
NR2E3Q9Y5X4 FLVCR1-AS1-203ENST00000426161 892 ntTSL 1 (best) BASIC28.28■■■□□ 2.12
NR2E3Q9Y5X4 TMEM218-215ENST00000532407 1103 ntAPPRIS P1 TSL 1 (best) BASIC28.28■■■□□ 2.12
NR2E3Q9Y5X4 PITX3-202ENST00000539804 1187 ntAPPRIS P1 TSL 5 BASIC28.28■■■□□ 2.12
NR2E3Q9Y5X4 PPP3CC-204ENST00000518852 1598 ntTSL 2 BASIC28.28■■■□□ 2.12
NR2E3Q9Y5X4 ZBTB12-201ENST00000375527 1875 ntAPPRIS P1 TSL 1 (best) BASIC28.27■■■□□ 2.12
NR2E3Q9Y5X4 DPF1-204ENST00000416611 2341 ntTSL 5 BASIC28.26■■■□□ 2.12
NR2E3Q9Y5X4 BCL7B-201ENST00000223368 1975 ntAPPRIS P1 TSL 1 (best) BASIC28.26■■■□□ 2.11
NR2E3Q9Y5X4 WHAMMP2-203ENST00000563942 1603 ntBASIC28.26■■■□□ 2.11
NR2E3Q9Y5X4 SOD3-201ENST00000382120 1526 ntAPPRIS P1 TSL 1 (best) BASIC28.26■■■□□ 2.11
NR2E3Q9Y5X4 CNIH2-203ENST00000528852 1524 ntAPPRIS ALT1 TSL 1 (best) BASIC28.26■■■□□ 2.11
NR2E3Q9Y5X4 ARL8A-204ENST00000614750 1727 ntTSL 3 BASIC28.26■■■□□ 2.11
NR2E3Q9Y5X4 AC135983.2-203ENST00000454486 1613 ntBASIC28.25■■■□□ 2.11
NR2E3Q9Y5X4 PKNOX2-AS1-201ENST00000532316 586 ntTSL 3 BASIC28.25■■■□□ 2.11
NR2E3Q9Y5X4 NIT1-201ENST00000368007 1749 ntTSL 2 BASIC28.25■■■□□ 2.11
NR2E3Q9Y5X4 C16orf95-201ENST00000253461 953 ntAPPRIS P3 TSL 1 (best) BASIC28.24■■■□□ 2.11
NR2E3Q9Y5X4 LTC4S-205ENST00000486713 496 ntTSL 2 BASIC28.24■■■□□ 2.11
NR2E3Q9Y5X4 ZEB1-AS1-205ENST00000605946 382 ntTSL 5 BASIC28.24■■■□□ 2.11
NR2E3Q9Y5X4 AVEN-201ENST00000306730 1605 ntAPPRIS P1 TSL 1 (best) BASIC28.24■■■□□ 2.11
NR2E3Q9Y5X4 LFNG-201ENST00000222725 2377 ntAPPRIS P4 TSL 5 BASIC28.24■■■□□ 2.11
NR2E3Q9Y5X4 WDR86-204ENST00000477459 1428 ntTSL 2 BASIC28.24■■■□□ 2.11
NR2E3Q9Y5X4 CDKN2B-202ENST00000380142 859 ntTSL 1 (best) BASIC28.23■■■□□ 2.11
NR2E3Q9Y5X4 AC104002.3-202ENST00000557170 1100 ntTSL 3 BASIC28.23■■■□□ 2.11
NR2E3Q9Y5X4 FAM78B-201ENST00000338353 1597 ntAPPRIS P1 TSL 1 (best) BASIC28.23■■■□□ 2.11
NR2E3Q9Y5X4 CRELD2-203ENST00000404488 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC28.23■■■□□ 2.11
NR2E3Q9Y5X4 CAMK2N2-201ENST00000296238 1362 ntAPPRIS P1 TSL 1 (best) BASIC28.23■■■□□ 2.11
NR2E3Q9Y5X4 ABHD17B-202ENST00000377041 1312 ntAPPRIS P4 TSL 1 (best) BASIC28.22■■■□□ 2.11
NR2E3Q9Y5X4 AC120057.4-201ENST00000624722 1615 ntBASIC28.22■■■□□ 2.11
NR2E3Q9Y5X4 ENKD1-201ENST00000243878 1579 ntAPPRIS P1 TSL 1 (best) BASIC28.22■■■□□ 2.11
NR2E3Q9Y5X4 SHC2-201ENST00000264554 2494 ntAPPRIS P1 TSL 1 (best) BASIC28.22■■■□□ 2.11
NR2E3Q9Y5X4 HOMER3-202ENST00000392351 1557 ntAPPRIS P3 TSL 1 (best) BASIC28.22■■■□□ 2.11
NR2E3Q9Y5X4 AL157400.5-201ENST00000507624 621 ntBASIC28.22■■■□□ 2.11
NR2E3Q9Y5X4 KHDRBS3-201ENST00000355849 1977 ntAPPRIS P1 TSL 1 (best) BASIC28.22■■■□□ 2.11
NR2E3Q9Y5X4 AC010864.1-201ENST00000609407 1511 ntBASIC28.22■■■□□ 2.11
NR2E3Q9Y5X4 AL356441.2-201ENST00000443009 864 ntBASIC28.21■■■□□ 2.11
NR2E3Q9Y5X4 NBPF26-209ENST00000624419 1133 ntTSL 5 BASIC28.21■■■□□ 2.11
NR2E3Q9Y5X4 WBP1-201ENST00000233615 1294 ntAPPRIS P2 TSL 1 (best) BASIC28.2■■■□□ 2.1
NR2E3Q9Y5X4 ABHD12-201ENST00000339157 2117 ntAPPRIS P1 TSL 2 BASIC28.2■■■□□ 2.1
NR2E3Q9Y5X4 PSMG4-206ENST00000438998 838 ntAPPRIS P1 TSL 2 BASIC28.2■■■□□ 2.1
NR2E3Q9Y5X4 FAM120C-203ENST00000477084 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC28.2■■■□□ 2.1
NR2E3Q9Y5X4 COQ2-202ENST00000311469 1641 ntAPPRIS P2 TSL 1 (best) BASIC28.2■■■□□ 2.1
NR2E3Q9Y5X4 C16orf59-202ENST00000483320 1709 ntAPPRIS ALT2 TSL 2 BASIC28.2■■■□□ 2.1
NR2E3Q9Y5X4 ATRNL1-209ENST00000609571 1818 ntTSL 1 (best) BASIC28.2■■■□□ 2.1
NR2E3Q9Y5X4 TXNRD2-204ENST00000400521 2115 ntAPPRIS P2 TSL 1 (best) BASIC28.19■■■□□ 2.1
NR2E3Q9Y5X4 AC092647.5-201ENST00000426595 1732 ntAPPRIS P1 TSL 5 BASIC28.19■■■□□ 2.1
NR2E3Q9Y5X4 CENPX-202ENST00000392359 805 ntAPPRIS P1 TSL 2 BASIC28.19■■■□□ 2.1
NR2E3Q9Y5X4 CCER2-201ENST00000571838 1057 ntAPPRIS P2 TSL 5 BASIC28.19■■■□□ 2.1
NR2E3Q9Y5X4 MSRB2-201ENST00000376510 1803 ntAPPRIS P1 TSL 1 (best) BASIC28.18■■■□□ 2.1
NR2E3Q9Y5X4 MDK-203ENST00000395566 828 ntAPPRIS P2 TSL 1 (best) BASIC28.18■■■□□ 2.1
NR2E3Q9Y5X4 AC025884.2-201ENST00000553429 711 ntBASIC28.18■■■□□ 2.1
NR2E3Q9Y5X4 RHOBTB3-206ENST00000506817 1432 ntTSL 2 BASIC28.18■■■□□ 2.1
NR2E3Q9Y5X4 PKIG-206ENST00000372892 1338 ntAPPRIS P1 TSL 2 BASIC28.18■■■□□ 2.1
NR2E3Q9Y5X4 STUB1-205ENST00000565677 1560 ntTSL 1 (best) BASIC28.17■■■□□ 2.1
NR2E3Q9Y5X4 AL355490.1-201ENST00000445808 805 ntTSL 3 BASIC28.17■■■□□ 2.1
NR2E3Q9Y5X4 DUX4L9-201ENST00000449051 1259 ntBASIC28.17■■■□□ 2.1
NR2E3Q9Y5X4 AC139795.1-202ENST00000500444 432 ntBASIC28.17■■■□□ 2.1
NR2E3Q9Y5X4 CBLN1-201ENST00000219197 2435 ntAPPRIS P1 TSL 1 (best) BASIC28.17■■■□□ 2.1
NR2E3Q9Y5X4 FOXD3-201ENST00000371116 2086 ntAPPRIS P1 BASIC28.16■■■□□ 2.1
NR2E3Q9Y5X4 ST7-202ENST00000323984 2142 ntTSL 5 BASIC28.16■■■□□ 2.1
NR2E3Q9Y5X4 ST7-207ENST00000393449 2127 ntTSL 5 BASIC28.16■■■□□ 2.1
NR2E3Q9Y5X4 TRNP1-201ENST00000522111 1958 ntAPPRIS P2 TSL 1 (best) BASIC28.15■■■□□ 2.1
NR2E3Q9Y5X4 PEMT-202ENST00000395781 1050 ntTSL 2 BASIC28.15■■■□□ 2.1
NR2E3Q9Y5X4 PTPA-210ENST00000414510 1153 ntTSL 1 (best) BASIC28.15■■■□□ 2.1
NR2E3Q9Y5X4 MED25-210ENST00000612854 801 ntTSL 5 BASIC28.15■■■□□ 2.1
NR2E3Q9Y5X4 MED25-213ENST00000620467 1293 ntTSL 1 (best) BASIC28.15■■■□□ 2.1
NR2E3Q9Y5X4 MED25-214ENST00000622402 642 ntTSL 5 BASIC28.15■■■□□ 2.1
NR2E3Q9Y5X4 NAXE-203ENST00000368235 1125 ntAPPRIS P1 TSL 1 (best) BASIC28.14■■■□□ 2.1
NR2E3Q9Y5X4 TYMP-201ENST00000252029 1630 ntAPPRIS P3 TSL 1 (best) BASIC28.14■■■□□ 2.09
NR2E3Q9Y5X4 KCNK3-202ENST00000620977 1956 ntTSL 1 (best) BASIC28.13■■■□□ 2.09
NR2E3Q9Y5X4 MARCKSL1-201ENST00000329421 1699 ntAPPRIS P1 TSL 1 (best) BASIC28.13■■■□□ 2.09
NR2E3Q9Y5X4 AC008406.3-201ENST00000620001 1374 ntBASIC28.13■■■□□ 2.09
NR2E3Q9Y5X4 GNAI2-202ENST00000313601 2464 ntAPPRIS P1 TSL 1 (best) BASIC28.13■■■□□ 2.09
NR2E3Q9Y5X4 SDF2L1-201ENST00000248958 865 ntAPPRIS P1 TSL 1 (best) BASIC28.13■■■□□ 2.09
NR2E3Q9Y5X4 AC139795.1-203ENST00000515045 853 ntTSL 2 BASIC28.13■■■□□ 2.09
NR2E3Q9Y5X4 PLEKHJ1-213ENST00000591099 1092 ntTSL 2 BASIC28.13■■■□□ 2.09
NR2E3Q9Y5X4 AC026202.3-201ENST00000600805 1127 ntBASIC28.13■■■□□ 2.09
NR2E3Q9Y5X4 AC103834.1-201ENST00000520383 144 ntBASIC28.12■■■□□ 2.09
NR2E3Q9Y5X4 WBP1-202ENST00000393972 1325 ntTSL 2 BASIC28.12■■■□□ 2.09
NR2E3Q9Y5X4 G6PC3-201ENST00000269097 1533 ntAPPRIS P1 TSL 1 (best) BASIC28.12■■■□□ 2.09
NR2E3Q9Y5X4 FTCD-203ENST00000397746 1878 ntAPPRIS P1 TSL 1 (best) BASIC28.11■■■□□ 2.09
NR2E3Q9Y5X4 DCDC2C-201ENST00000399143 1476 ntAPPRIS P1 TSL 5 BASIC28.11■■■□□ 2.09
NR2E3Q9Y5X4 SMPD5-203ENST00000639008 1464 ntBASIC28.11■■■□□ 2.09
NR2E3Q9Y5X4 LRP11-202ENST00000367368 1042 ntTSL 2 BASIC28.11■■■□□ 2.09
NR2E3Q9Y5X4 C17orf49-201ENST00000439424 850 ntAPPRIS P3 TSL 1 (best) BASIC28.11■■■□□ 2.09
NR2E3Q9Y5X4 TCEA1-214ENST00000640382 1234 ntTSL 5 BASIC28.11■■■□□ 2.09
NR2E3Q9Y5X4 GAL3ST1-204ENST00000402369 1712 ntAPPRIS P1 TSL 3 BASIC28.11■■■□□ 2.09
Retrieved 100 of 98,524 protein–RNA pairs in 30.8 ms