Protein–RNA interactions for Protein: Q9H444

CHMP4B, Charged multivesicular body protein 4b, humanhuman

Known RBP Predictions only

Length 224 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4BQ9H444 GABRA5-203ENST00000400081 2761 ntAPPRIS P1 TSL 5 BASIC31.76■■■□□ 2.68
CHMP4BQ9H444 HDGFL1-201ENST00000510882 2174 ntAPPRIS P1 BASIC31.76■■■□□ 2.67
CHMP4BQ9H444 ROM1-201ENST00000278833 1878 ntAPPRIS P2 TSL 1 (best) BASIC31.76■■■□□ 2.67
CHMP4BQ9H444 TSPAN3-203ENST00000424443 1530 ntTSL 2 BASIC31.75■■■□□ 2.67
CHMP4BQ9H444 F8A1-201ENST00000610495 1713 ntAPPRIS P1 BASIC31.75■■■□□ 2.67
CHMP4BQ9H444 PSMG1-201ENST00000331573 2154 ntAPPRIS P1 TSL 1 (best) BASIC31.75■■■□□ 2.67
CHMP4BQ9H444 SPIRE1-203ENST00000410092 5533 ntAPPRIS P3 TSL 1 (best) BASIC31.74■■■□□ 2.67
CHMP4BQ9H444 CTSA-203ENST00000372459 1972 ntTSL 1 (best) BASIC31.74■■■□□ 2.67
CHMP4BQ9H444 ACAA1-220ENST00000627515 1862 ntTSL 5 BASIC31.74■■■□□ 2.67
CHMP4BQ9H444 HSPB11-201ENST00000194214 915 ntAPPRIS P1 TSL 1 (best) BASIC31.74■■■□□ 2.67
CHMP4BQ9H444 UBALD1-202ENST00000587615 799 ntTSL 2 BASIC31.74■■■□□ 2.67
CHMP4BQ9H444 CHML-204ENST00000638121 920 ntTSL 2 BASIC31.74■■■□□ 2.67
CHMP4BQ9H444 RUNX2-203ENST00000371436 1588 ntAPPRIS ALT2 TSL 5 BASIC31.73■■■□□ 2.67
CHMP4BQ9H444 ZFAND2B-206ENST00000409336 944 ntAPPRIS P1 TSL 5 BASIC31.73■■■□□ 2.67
CHMP4BQ9H444 AC096888.1-201ENST00000487097 565 ntTSL 4 BASIC31.73■■■□□ 2.67
CHMP4BQ9H444 ZFAND2B-221ENST00000621130 1070 ntTSL 5 BASIC31.73■■■□□ 2.67
CHMP4BQ9H444 BBC3-204ENST00000449228 1827 ntTSL 1 (best) BASIC31.71■■■□□ 2.67
CHMP4BQ9H444 NR6A1-203ENST00000416460 1898 ntAPPRIS ALT2 TSL 1 (best) BASIC31.71■■■□□ 2.67
CHMP4BQ9H444 RAD21-AS1-201ENST00000521487 2010 ntTSL 1 (best) BASIC31.71■■■□□ 2.67
CHMP4BQ9H444 MPST-206ENST00000429360 1331 ntTSL 1 (best) BASIC31.71■■■□□ 2.67
CHMP4BQ9H444 AL121749.1-202ENST00000609313 2153 ntBASIC31.7■■■□□ 2.67
CHMP4BQ9H444 RPS2-210ENST00000530225 765 ntTSL 2 BASIC31.7■■■□□ 2.67
CHMP4BQ9H444 DUX4L13-201ENST00000554103 1267 ntBASIC31.7■■■□□ 2.67
CHMP4BQ9H444 DUX4L15-201ENST00000611059 1267 ntBASIC31.7■■■□□ 2.67
CHMP4BQ9H444 DUX4L23-201ENST00000615195 1269 ntBASIC31.7■■■□□ 2.67
CHMP4BQ9H444 DUX4L24-201ENST00000617576 1269 ntBASIC31.7■■■□□ 2.67
CHMP4BQ9H444 DUX4L22-201ENST00000618238 1269 ntBASIC31.7■■■□□ 2.67
CHMP4BQ9H444 DUX4L20-201ENST00000619712 1269 ntBASIC31.7■■■□□ 2.67
CHMP4BQ9H444 DUX4L21-201ENST00000622058 1269 ntBASIC31.7■■■□□ 2.67
CHMP4BQ9H444 DUX4L10-201ENST00000622460 1267 ntBASIC31.7■■■□□ 2.67
CHMP4BQ9H444 DUX4L25-201ENST00000624915 1269 ntBASIC31.7■■■□□ 2.67
CHMP4BQ9H444 NAPA-201ENST00000263354 1839 ntAPPRIS P1 TSL 1 (best) BASIC31.7■■■□□ 2.66
CHMP4BQ9H444 NELFB-202ENST00000634710 1887 ntAPPRIS P2 TSL 1 (best) BASIC31.69■■■□□ 2.66
CHMP4BQ9H444 MXRA7-202ENST00000375036 1950 ntAPPRIS ALT2 TSL 2 BASIC31.69■■■□□ 2.66
CHMP4BQ9H444 LAPTM4B-203ENST00000521545 915 ntAPPRIS P1 TSL 1 (best) BASIC31.69■■■□□ 2.66
CHMP4BQ9H444 C14orf80-205ENST00000392523 1845 ntAPPRIS ALT2 TSL 1 (best) BASIC31.69■■■□□ 2.66
CHMP4BQ9H444 FADD-201ENST00000301838 1841 ntAPPRIS P1 TSL 1 (best) BASIC31.68■■■□□ 2.66
CHMP4BQ9H444 U2AF1-203ENST00000398137 1019 ntTSL 1 (best) BASIC31.68■■■□□ 2.66
CHMP4BQ9H444 U2AF1L5-212ENST00000639996 1019 ntTSL 1 (best) BASIC31.68■■■□□ 2.66
CHMP4BQ9H444 CCND3-203ENST00000372991 2085 ntAPPRIS P1 TSL 1 (best) BASIC31.68■■■□□ 2.66
CHMP4BQ9H444 NTN3-201ENST00000293973 1986 ntAPPRIS P1 TSL 1 (best) BASIC31.67■■■□□ 2.66
CHMP4BQ9H444 TCFL5-201ENST00000217162 2453 ntAPPRIS ALT2 TSL 1 (best) BASIC31.67■■■□□ 2.66
CHMP4BQ9H444 TCFL5-202ENST00000335351 2456 ntAPPRIS P2 TSL 1 (best) BASIC31.67■■■□□ 2.66
CHMP4BQ9H444 ZNRF2P2-203ENST00000454624 420 ntBASIC31.67■■■□□ 2.66
CHMP4BQ9H444 CPTP-201ENST00000343938 2190 ntAPPRIS P1 TSL 2 BASIC31.66■■■□□ 2.66
CHMP4BQ9H444 DUX4L11-201ENST00000611504 1267 ntBASIC31.65■■■□□ 2.66
CHMP4BQ9H444 DUX4L12-201ENST00000614593 1267 ntBASIC31.65■■■□□ 2.66
CHMP4BQ9H444 DUX4L14-201ENST00000621227 1267 ntBASIC31.65■■■□□ 2.66
CHMP4BQ9H444 EXOC3-209ENST00000512944 2825 ntAPPRIS P1 TSL 1 (best) BASIC31.65■■■□□ 2.66
CHMP4BQ9H444 RHOC-202ENST00000339083 1418 ntAPPRIS P1 TSL 1 (best) BASIC31.65■■■□□ 2.66
CHMP4BQ9H444 SLC25A6-201ENST00000381401 2062 ntAPPRIS P1 TSL 1 (best) BASIC31.64■■■□□ 2.66
CHMP4BQ9H444 UCK1-204ENST00000372215 2167 ntAPPRIS P1 TSL 1 (best) BASIC31.64■■■□□ 2.66
CHMP4BQ9H444 ANKRD53-203ENST00000441349 1797 ntTSL 5 BASIC31.64■■■□□ 2.66
CHMP4BQ9H444 NDEL1-202ENST00000380025 2181 ntTSL 5 BASIC31.64■■■□□ 2.66
CHMP4BQ9H444 NPB-202ENST00000573081 2154 ntAPPRIS ALT2 BASIC31.63■■■□□ 2.65
CHMP4BQ9H444 HOXB3-201ENST00000311626 2642 ntAPPRIS P1 TSL 1 (best) BASIC31.63■■■□□ 2.65
CHMP4BQ9H444 DACT2-202ENST00000366796 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC31.63■■■□□ 2.65
CHMP4BQ9H444 RAB3IL1-202ENST00000394836 2284 ntAPPRIS P1 TSL 1 (best) BASIC31.63■■■□□ 2.65
CHMP4BQ9H444 CCDC136-206ENST00000464832 1720 ntAPPRIS ALT2 TSL 5 BASIC31.62■■■□□ 2.65
CHMP4BQ9H444 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC31.62■■■□□ 2.65
CHMP4BQ9H444 PHF23-205ENST00000571362 1768 ntTSL 2 BASIC31.61■■■□□ 2.65
CHMP4BQ9H444 AC009690.3-201ENST00000569547 1902 ntAPPRIS P1 TSL 2 BASIC31.61■■■□□ 2.65
CHMP4BQ9H444 TMEM55B-202ENST00000398020 1696 ntAPPRIS ALT1 TSL 1 (best) BASIC31.6■■■□□ 2.65
CHMP4BQ9H444 C8orf58-202ENST00000409586 2021 ntAPPRIS ALT2 TSL 2 BASIC31.59■■■□□ 2.65
CHMP4BQ9H444 RNF19B-201ENST00000235150 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC31.59■■■□□ 2.65
CHMP4BQ9H444 EBPL-201ENST00000242827 914 ntAPPRIS P1 TSL 1 (best) BASIC31.59■■■□□ 2.65
CHMP4BQ9H444 AURKAIP1-203ENST00000338370 1072 ntAPPRIS P1 TSL 1 (best) BASIC31.59■■■□□ 2.65
CHMP4BQ9H444 AGPS-202ENST00000409888 815 ntTSL 4 BASIC31.59■■■□□ 2.65
CHMP4BQ9H444 AC008813.1-201ENST00000536597 885 ntBASIC31.59■■■□□ 2.65
CHMP4BQ9H444 RRAD-202ENST00000420652 1476 ntAPPRIS P1 TSL 1 (best) BASIC31.59■■■□□ 2.65
CHMP4BQ9H444 GSR-205ENST00000541648 1410 ntTSL 1 (best) BASIC31.58■■■□□ 2.65
CHMP4BQ9H444 SLC35D2-203ENST00000375259 1361 ntTSL 1 (best) BASIC31.58■■■□□ 2.65
CHMP4BQ9H444 TSPAN4-207ENST00000397411 1025 ntAPPRIS P1 TSL 2 BASIC31.57■■■□□ 2.64
CHMP4BQ9H444 ABHD17AP4-201ENST00000411545 909 ntBASIC31.57■■■□□ 2.64
CHMP4BQ9H444 HS3ST6-201ENST00000454677 1273 ntAPPRIS P1 TSL 1 (best) BASIC31.55■■■□□ 2.64
CHMP4BQ9H444 PIK3R2-207ENST00000617130 2187 ntAPPRIS P1 TSL 1 (best) BASIC31.55■■■□□ 2.64
CHMP4BQ9H444 ZNF768-201ENST00000380412 2315 ntAPPRIS P2 TSL 1 (best) BASIC31.55■■■□□ 2.64
CHMP4BQ9H444 LMTK3-202ENST00000600059 5113 ntAPPRIS ALT2 TSL 2 BASIC31.55■■■□□ 2.64
CHMP4BQ9H444 CTBP1-201ENST00000290921 2297 ntTSL 1 (best) BASIC31.55■■■□□ 2.64
CHMP4BQ9H444 CDPF1-201ENST00000314567 1875 ntAPPRIS P2 TSL 1 (best) BASIC31.55■■■□□ 2.64
CHMP4BQ9H444 SNTB1-202ENST00000517992 2273 ntAPPRIS P1 TSL 1 (best) BASIC31.54■■■□□ 2.64
CHMP4BQ9H444 TRIM52-AS1-203ENST00000509252 529 ntTSL 3 BASIC31.54■■■□□ 2.64
CHMP4BQ9H444 CHST11-202ENST00000546689 756 ntTSL 2 BASIC31.54■■■□□ 2.64
CHMP4BQ9H444 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC31.54■■■□□ 2.64
CHMP4BQ9H444 PRR5-ARHGAP8-202ENST00000361473 2013 ntTSL 5 BASIC31.54■■■□□ 2.64
CHMP4BQ9H444 CAPNS1-215ENST00000628018 1509 ntAPPRIS ALT2 TSL 5 BASIC31.54■■■□□ 2.64
CHMP4BQ9H444 IGFBPL1-201ENST00000377694 1093 ntAPPRIS P1 TSL 2 BASIC31.53■■■□□ 2.64
CHMP4BQ9H444 CYB5R3-201ENST00000352397 2124 ntAPPRIS P1 TSL 1 (best) BASIC31.52■■■□□ 2.64
CHMP4BQ9H444 KCNJ4-201ENST00000303592 2065 ntAPPRIS P1 TSL 1 (best) BASIC31.52■■■□□ 2.64
CHMP4BQ9H444 CAAP1-205ENST00000520187 773 ntTSL 5 BASIC31.52■■■□□ 2.64
CHMP4BQ9H444 CARM1-202ENST00000344150 2722 ntAPPRIS ALT2 TSL 5 BASIC31.52■■■□□ 2.64
CHMP4BQ9H444 AL121987.2-201ENST00000418602 1578 ntTSL 2 BASIC31.51■■■□□ 2.64
CHMP4BQ9H444 FRAT2-201ENST00000371019 2213 ntAPPRIS P1 BASIC31.51■■■□□ 2.63
CHMP4BQ9H444 DNAJC21-201ENST00000342382 2309 ntAPPRIS P1 TSL 1 (best) BASIC31.5■■■□□ 2.63
CHMP4BQ9H444 CLK2-203ENST00000368361 2166 ntAPPRIS ALT1 TSL 1 (best) BASIC31.5■■■□□ 2.63
CHMP4BQ9H444 GADD45G-201ENST00000252506 1065 ntAPPRIS P1 TSL 1 (best) BASIC31.5■■■□□ 2.63
CHMP4BQ9H444 ATP8B2-201ENST00000368487 1523 ntTSL 1 (best) BASIC31.49■■■□□ 2.63
CHMP4BQ9H444 C11orf80-204ENST00000525908 2135 ntAPPRIS P3 TSL 2 BASIC31.49■■■□□ 2.63
CHMP4BQ9H444 RHBDD2-202ENST00000318622 1878 ntTSL 2 BASIC31.49■■■□□ 2.63
CHMP4BQ9H444 RANBP1-202ENST00000402752 1132 ntAPPRIS ALT1 TSL 1 (best) BASIC31.49■■■□□ 2.63
Retrieved 100 of 98,524 protein–RNA pairs in 28.5 ms