Protein–RNA interactions for Protein: Q9H0E7

USP44, Ubiquitin carboxyl-terminal hydrolase 44, humanhuman

Predictions only

Length 712 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP44Q9H0E7 BCAP31-201ENST00000345046 1589 ntAPPRIS P1 TSL 1 (best) BASIC31.78■■■□□ 2.68
USP44Q9H0E7 CHST11-203ENST00000547956 936 ntTSL 2 BASIC31.78■■■□□ 2.68
USP44Q9H0E7 LACTBL1-202ENST00000618559 1500 ntAPPRIS ALT2 TSL 5 BASIC31.78■■■□□ 2.68
USP44Q9H0E7 SPATA33-209ENST00000579310 1490 ntAPPRIS ALT2 TSL 2 BASIC31.78■■■□□ 2.68
USP44Q9H0E7 RUNX2-211ENST00000625924 1458 ntAPPRIS ALT2 TSL 1 (best) BASIC31.78■■■□□ 2.68
USP44Q9H0E7 G6PC3-201ENST00000269097 1533 ntAPPRIS P1 TSL 1 (best) BASIC31.77■■■□□ 2.68
USP44Q9H0E7 FAM117A-201ENST00000240364 2365 ntAPPRIS P2 TSL 1 (best) BASIC31.77■■■□□ 2.68
USP44Q9H0E7 PLEKHF2-202ENST00000519516 1144 ntAPPRIS P1 TSL 3 BASIC31.77■■■□□ 2.68
USP44Q9H0E7 AC148477.6-201ENST00000623746 465 ntBASIC31.77■■■□□ 2.68
USP44Q9H0E7 FAH-213ENST00000561421 1549 ntAPPRIS P1 TSL 1 (best) BASIC31.76■■■□□ 2.68
USP44Q9H0E7 SYT12-205ENST00000527043 1661 ntAPPRIS P1 TSL 1 (best) BASIC31.76■■■□□ 2.67
USP44Q9H0E7 ITGA9-203ENST00000422441 2282 ntTSL 1 (best) BASIC31.75■■■□□ 2.67
USP44Q9H0E7 LAGE3-201ENST00000357360 949 ntAPPRIS P1 TSL 1 (best) BASIC31.75■■■□□ 2.67
USP44Q9H0E7 NREP-216ENST00000508870 540 ntAPPRIS P1 TSL 4 BASIC31.74■■■□□ 2.67
USP44Q9H0E7 SMARCD3-203ENST00000392811 2018 ntTSL 1 (best) BASIC31.73■■■□□ 2.67
USP44Q9H0E7 ACTG1-210ENST00000575842 2256 ntAPPRIS P1 TSL 1 (best) BASIC31.73■■■□□ 2.67
USP44Q9H0E7 LSM6-202ENST00000502781 1352 ntAPPRIS P1 TSL 1 (best) BASIC31.73■■■□□ 2.67
USP44Q9H0E7 AC016595.1-201ENST00000559410 383 ntTSL 3 BASIC31.73■■■□□ 2.67
USP44Q9H0E7 LACTB-201ENST00000261893 1972 ntAPPRIS P1 TSL 1 (best) BASIC31.72■■■□□ 2.67
USP44Q9H0E7 MIR219A2-201ENST00000608502 1504 ntBASIC31.72■■■□□ 2.67
USP44Q9H0E7 GPR25-201ENST00000304244 1224 ntAPPRIS P1 BASIC31.72■■■□□ 2.67
USP44Q9H0E7 CLDND1-226ENST00000513287 999 ntAPPRIS P1 TSL 2 BASIC31.72■■■□□ 2.67
USP44Q9H0E7 C16orf74-204ENST00000602719 1002 ntAPPRIS ALT2 TSL 3 BASIC31.72■■■□□ 2.67
USP44Q9H0E7 R3HDM4-208ENST00000626716 138 ntTSL 5 BASIC31.72■■■□□ 2.67
USP44Q9H0E7 AL121987.2-201ENST00000418602 1578 ntTSL 2 BASIC31.72■■■□□ 2.67
USP44Q9H0E7 DCUN1D5-201ENST00000260247 1337 ntAPPRIS P1 TSL 1 (best) BASIC31.72■■■□□ 2.67
USP44Q9H0E7 GPR75-ASB3-201ENST00000406625 2113 ntAPPRIS P1 TSL 2 BASIC31.71■■■□□ 2.67
USP44Q9H0E7 MNX1-201ENST00000252971 2174 ntAPPRIS P3 TSL 1 (best) BASIC31.71■■■□□ 2.67
USP44Q9H0E7 SV2B-203ENST00000545111 2099 ntTSL 2 BASIC31.71■■■□□ 2.67
USP44Q9H0E7 CCDC61-204ENST00000595358 1817 ntAPPRIS P2 TSL 5 BASIC31.7■■■□□ 2.67
USP44Q9H0E7 VEGFA-202ENST00000324450 954 ntTSL 1 (best) BASIC31.7■■■□□ 2.67
USP44Q9H0E7 VEGFA-203ENST00000372055 1286 ntTSL 1 (best) BASIC31.7■■■□□ 2.67
USP44Q9H0E7 VEGFA-213ENST00000482630 1146 ntTSL 1 (best) BASIC31.7■■■□□ 2.67
USP44Q9H0E7 VEGFA-227ENST00000615393 984 ntTSL 1 (best) BASIC31.7■■■□□ 2.67
USP44Q9H0E7 VEGFA-228ENST00000617771 1116 ntTSL 1 (best) BASIC31.7■■■□□ 2.67
USP44Q9H0E7 VEGFA-229ENST00000621747 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC31.7■■■□□ 2.67
USP44Q9H0E7 SRP68-213ENST00000629930 165 ntTSL 5 BASIC31.7■■■□□ 2.67
USP44Q9H0E7 VEGFA-230ENST00000640482 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC31.7■■■□□ 2.67
USP44Q9H0E7 VEGFA-232ENST00000640653 1170 ntAPPRIS ALT2 TSL 1 (best) BASIC31.7■■■□□ 2.67
USP44Q9H0E7 CDC34-201ENST00000215574 1471 ntAPPRIS P1 TSL 1 (best) BASIC31.7■■■□□ 2.66
USP44Q9H0E7 HOMER2-202ENST00000450735 1950 ntAPPRIS ALT2 TSL 1 (best) BASIC31.7■■■□□ 2.66
USP44Q9H0E7 CRELD2-203ENST00000404488 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC31.69■■■□□ 2.66
USP44Q9H0E7 PLSCR3-209ENST00000574401 2032 ntAPPRIS P1 TSL 1 (best) BASIC31.68■■■□□ 2.66
USP44Q9H0E7 PXDC1-202ENST00000380283 2190 ntAPPRIS P1 TSL 1 (best) BASIC31.68■■■□□ 2.66
USP44Q9H0E7 MTCH1-201ENST00000373616 2006 ntTSL 1 (best) BASIC31.66■■■□□ 2.66
USP44Q9H0E7 LINC01918-201ENST00000436841 797 ntTSL 2 BASIC31.66■■■□□ 2.66
USP44Q9H0E7 CRNDE-206ENST00000559432 587 ntTSL 3 BASIC31.66■■■□□ 2.66
USP44Q9H0E7 HIST2H3C-201ENST00000369158 1656 ntAPPRIS P1 BASIC31.66■■■□□ 2.66
USP44Q9H0E7 HIST2H3A-201ENST00000403683 1656 ntAPPRIS P1 BASIC31.66■■■□□ 2.66
USP44Q9H0E7 NFYB-205ENST00000551727 1727 ntAPPRIS P1 TSL 3 BASIC31.66■■■□□ 2.66
USP44Q9H0E7 FZD2-201ENST00000315323 2112 ntAPPRIS P1 BASIC31.66■■■□□ 2.66
USP44Q9H0E7 AC018358.1-201ENST00000631079 1402 ntBASIC31.66■■■□□ 2.66
USP44Q9H0E7 FAM120AOS-202ENST00000423591 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC31.65■■■□□ 2.66
USP44Q9H0E7 PDF-201ENST00000288022 1158 ntAPPRIS P1 TSL 1 (best) BASIC31.65■■■□□ 2.66
USP44Q9H0E7 COPZ2-210ENST00000621465 895 ntAPPRIS P1 TSL 1 (best) BASIC31.65■■■□□ 2.66
USP44Q9H0E7 EPB41L4A-AS2-201ENST00000623705 1396 ntBASIC31.65■■■□□ 2.66
USP44Q9H0E7 GSR-205ENST00000541648 1410 ntTSL 1 (best) BASIC31.65■■■□□ 2.66
USP44Q9H0E7 EMID1-203ENST00000404820 2118 ntTSL 5 BASIC31.64■■■□□ 2.66
USP44Q9H0E7 AQP1-203ENST00000409899 1009 ntTSL 1 (best) BASIC31.63■■■□□ 2.65
USP44Q9H0E7 BANF1-208ENST00000533166 1135 ntAPPRIS P1 TSL 2 BASIC31.63■■■□□ 2.65
USP44Q9H0E7 AC078883.1-202ENST00000450443 1397 ntTSL 3 BASIC31.63■■■□□ 2.65
USP44Q9H0E7 C11orf80-218ENST00000540737 1786 ntAPPRIS ALT2 TSL 2 BASIC31.63■■■□□ 2.65
USP44Q9H0E7 LSM7-201ENST00000252622 529 ntAPPRIS P1 TSL 1 (best) BASIC31.62■■■□□ 2.65
USP44Q9H0E7 GGA1-204ENST00000381756 2107 ntTSL 1 (best) BASIC31.61■■■□□ 2.65
USP44Q9H0E7 BCL7B-202ENST00000411832 1458 ntTSL 2 BASIC31.61■■■□□ 2.65
USP44Q9H0E7 PKIG-207ENST00000372894 1191 ntAPPRIS P1 TSL 1 (best) BASIC31.61■■■□□ 2.65
USP44Q9H0E7 NTN3-201ENST00000293973 1986 ntAPPRIS P1 TSL 1 (best) BASIC31.61■■■□□ 2.65
USP44Q9H0E7 ABHD17C-202ENST00000558464 1976 ntTSL 1 (best) BASIC31.6■■■□□ 2.65
USP44Q9H0E7 TCF24-201ENST00000563496 2450 ntAPPRIS P1 TSL 5 BASIC31.6■■■□□ 2.65
USP44Q9H0E7 ATOH7-201ENST00000373673 1480 ntAPPRIS P1 BASIC31.59■■■□□ 2.65
USP44Q9H0E7 C17orf97-201ENST00000360127 1839 ntAPPRIS P2 TSL 1 (best) BASIC31.59■■■□□ 2.65
USP44Q9H0E7 MRPL51-201ENST00000229238 1234 ntAPPRIS P1 TSL 1 (best) BASIC31.59■■■□□ 2.65
USP44Q9H0E7 BAX-202ENST00000345358 793 ntAPPRIS P1 TSL 1 (best) BASIC31.59■■■□□ 2.65
USP44Q9H0E7 ZBTB25-202ENST00000555220 1440 ntTSL 1 (best) BASIC31.58■■■□□ 2.65
USP44Q9H0E7 TSPOAP1-AS1-203ENST00000579527 2042 ntTSL 2 BASIC31.58■■■□□ 2.65
USP44Q9H0E7 NSMCE4A-201ENST00000369017 1224 ntTSL 1 (best) BASIC31.58■■■□□ 2.65
USP44Q9H0E7 WTAP-206ENST00000621533 2109 ntAPPRIS P1 TSL 2 BASIC31.58■■■□□ 2.65
USP44Q9H0E7 PLPPR3-204ENST00000520876 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC31.58■■■□□ 2.65
USP44Q9H0E7 NELFB-202ENST00000634710 1887 ntAPPRIS P2 TSL 1 (best) BASIC31.57■■■□□ 2.64
USP44Q9H0E7 KIF13A-207ENST00000502704 1330 ntTSL 1 (best) BASIC31.57■■■□□ 2.64
USP44Q9H0E7 FAM168B-201ENST00000389915 944 ntAPPRIS P1 TSL 3 BASIC31.57■■■□□ 2.64
USP44Q9H0E7 PRR5-ARHGAP8-202ENST00000361473 2013 ntTSL 5 BASIC31.56■■■□□ 2.64
USP44Q9H0E7 DHRS13-203ENST00000426464 1569 ntTSL 2 BASIC31.56■■■□□ 2.64
USP44Q9H0E7 GAL3ST3-203ENST00000527878 1599 ntAPPRIS P1 TSL 1 (best) BASIC31.56■■■□□ 2.64
USP44Q9H0E7 HOXD-AS2-201ENST00000426965 927 ntTSL 1 (best) BASIC31.56■■■□□ 2.64
USP44Q9H0E7 AC010907.1-201ENST00000441632 807 ntTSL 3 BASIC31.56■■■□□ 2.64
USP44Q9H0E7 SERPING1-205ENST00000403558 2231 ntTSL 5 BASIC31.56■■■□□ 2.64
USP44Q9H0E7 EVC-203ENST00000509451 1960 ntTSL 1 (best) BASIC31.56■■■□□ 2.64
USP44Q9H0E7 AC142086.6-201ENST00000621154 1765 ntBASIC31.56■■■□□ 2.64
USP44Q9H0E7 SOWAHD-201ENST00000343905 1552 ntAPPRIS P1 BASIC31.56■■■□□ 2.64
USP44Q9H0E7 TMEM200C-201ENST00000383490 1920 ntAPPRIS P1 BASIC31.55■■■□□ 2.64
USP44Q9H0E7 ANKRD9-205ENST00000560748 1413 ntAPPRIS P1 TSL 2 BASIC31.55■■■□□ 2.64
USP44Q9H0E7 MRPL4-201ENST00000253099 1455 ntAPPRIS P2 TSL 1 (best) BASIC31.54■■■□□ 2.64
USP44Q9H0E7 TAF10-201ENST00000299424 1215 ntAPPRIS P1 TSL 1 (best) BASIC31.54■■■□□ 2.64
USP44Q9H0E7 CMPK2-203ENST00000458098 1224 ntTSL 1 (best) BASIC31.54■■■□□ 2.64
USP44Q9H0E7 MED25-210ENST00000612854 801 ntTSL 5 BASIC31.54■■■□□ 2.64
USP44Q9H0E7 MED25-213ENST00000620467 1293 ntTSL 1 (best) BASIC31.54■■■□□ 2.64
USP44Q9H0E7 MED25-214ENST00000622402 642 ntTSL 5 BASIC31.54■■■□□ 2.64
USP44Q9H0E7 F8A1-201ENST00000610495 1713 ntAPPRIS P1 BASIC31.54■■■□□ 2.64
USP44Q9H0E7 HSD17B12-202ENST00000395700 994 ntTSL 1 (best) BASIC31.53■■■□□ 2.64
Retrieved 100 of 98,524 protein–RNA pairs in 47.6 ms