Protein–RNA interactions for Protein: Q99715

COL12A1, Collagen alpha-1(XII) chain, humanhuman

Predictions only

Length 3,063 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1Q99715 AC092666.2-201ENST00000613287 246 ntBASIC22.54■■□□□ 1.2
COL12A1Q99715 AC239859.2-201ENST00000444165 318 ntBASIC22.53■■□□□ 1.2
COL12A1Q99715 CLEC11A-201ENST00000250340 1419 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
COL12A1Q99715 AVEN-201ENST00000306730 1605 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
COL12A1Q99715 COQ2-202ENST00000311469 1641 ntAPPRIS P2 TSL 1 (best) BASIC22.53■■□□□ 1.2
COL12A1Q99715 GLRB-203ENST00000509282 1757 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
COL12A1Q99715 FOXD1-202ENST00000615637 2272 ntAPPRIS P1 BASIC22.53■■□□□ 1.2
COL12A1Q99715 ADRA2C-202ENST00000509482 1600 ntTSL 3 BASIC22.53■■□□□ 1.2
COL12A1Q99715 EPM2A-202ENST00000435470 1278 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
COL12A1Q99715 CISD3-204ENST00000613478 2074 ntAPPRIS P1 TSL 2 BASIC22.52■■□□□ 1.2
COL12A1Q99715 MOB2-207ENST00000614710 705 ntTSL 5 BASIC22.52■■□□□ 1.2
COL12A1Q99715 ENKD1-201ENST00000243878 1579 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.19
COL12A1Q99715 FAM78B-201ENST00000338353 1597 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.19
COL12A1Q99715 PLA2G10-201ENST00000438167 1000 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
COL12A1Q99715 TOMM40-201ENST00000252487 1707 ntAPPRIS P2 TSL 1 (best) BASIC22.51■■□□□ 1.19
COL12A1Q99715 TOMM40-202ENST00000405636 1709 ntAPPRIS P2 TSL 1 (best) BASIC22.51■■□□□ 1.19
COL12A1Q99715 MARCKSL1-201ENST00000329421 1699 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
COL12A1Q99715 NAXE-202ENST00000368234 901 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
COL12A1Q99715 ANGPTL6-204ENST00000592641 1781 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
COL12A1Q99715 SMPD5-203ENST00000639008 1464 ntBASIC22.5■■□□□ 1.19
COL12A1Q99715 HES7-202ENST00000541682 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC22.5■■□□□ 1.19
COL12A1Q99715 RALB-208ENST00000631312 311 ntTSL 5 BASIC22.5■■□□□ 1.19
COL12A1Q99715 KCTD15-206ENST00000588881 1211 ntAPPRIS P1 TSL 2 BASIC22.5■■□□□ 1.19
COL12A1Q99715 GSR-205ENST00000541648 1410 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
COL12A1Q99715 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC22.49■■□□□ 1.19
COL12A1Q99715 MIR6765-201ENST00000614092 87 ntBASIC22.49■■□□□ 1.19
COL12A1Q99715 RHOBTB3-206ENST00000506817 1432 ntTSL 2 BASIC22.49■■□□□ 1.19
COL12A1Q99715 LSM6-202ENST00000502781 1352 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
COL12A1Q99715 GSX2-202ENST00000503800 1181 ntTSL 5 BASIC22.49■■□□□ 1.19
COL12A1Q99715 ZNF302-211ENST00000509528 577 ntTSL 4 BASIC22.49■■□□□ 1.19
COL12A1Q99715 WSB2-211ENST00000544233 2503 ntTSL 2 BASIC22.49■■□□□ 1.19
COL12A1Q99715 CRELD2-203ENST00000404488 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC22.49■■□□□ 1.19
COL12A1Q99715 QDPR-202ENST00000428702 1278 ntTSL 2 BASIC22.49■■□□□ 1.19
COL12A1Q99715 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC22.49■■□□□ 1.19
COL12A1Q99715 AC135983.2-203ENST00000454486 1613 ntBASIC22.48■■□□□ 1.19
COL12A1Q99715 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
COL12A1Q99715 YBX1P4-201ENST00000392794 808 ntBASIC22.48■■□□□ 1.19
COL12A1Q99715 KISS1-201ENST00000367194 709 ntAPPRIS P2 TSL 1 (best) BASIC22.48■■□□□ 1.19
COL12A1Q99715 C16orf59-202ENST00000483320 1709 ntAPPRIS ALT2 TSL 2 BASIC22.48■■□□□ 1.19
COL12A1Q99715 AL161658.1-201ENST00000623641 1967 ntBASIC22.47■■□□□ 1.19
COL12A1Q99715 PCMTD2-202ENST00000299468 1049 ntTSL 5 BASIC22.47■■□□□ 1.19
COL12A1Q99715 RPS2-210ENST00000530225 765 ntTSL 2 BASIC22.46■■□□□ 1.19
COL12A1Q99715 HSD11B1L-202ENST00000339423 1660 ntAPPRIS P3 TSL 1 (best) BASIC22.46■■□□□ 1.19
COL12A1Q99715 EPB41L4A-AS2-201ENST00000623705 1396 ntBASIC22.46■■□□□ 1.19
COL12A1Q99715 HM13-AS1-201ENST00000412178 489 ntTSL 3 BASIC22.46■■□□□ 1.19
COL12A1Q99715 SPCS2P3-201ENST00000500401 656 ntBASIC22.46■■□□□ 1.19
COL12A1Q99715 PPP1R14A-205ENST00000591585 949 ntTSL 2 BASIC22.46■■□□□ 1.19
COL12A1Q99715 UBE2E3-213ENST00000602959 909 ntAPPRIS P1 TSL 5 BASIC22.46■■□□□ 1.19
COL12A1Q99715 ARL8A-204ENST00000614750 1727 ntTSL 3 BASIC22.46■■□□□ 1.19
COL12A1Q99715 SNTG2-201ENST00000308624 1888 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.19
COL12A1Q99715 UBALD1-206ENST00000590965 1462 ntTSL 2 BASIC22.45■■□□□ 1.19
COL12A1Q99715 MIR1-1HG-202ENST00000624914 1220 ntTSL 1 (best) BASIC22.45■■□□□ 1.18
COL12A1Q99715 FMR1-219ENST00000621453 1864 ntTSL 1 (best) BASIC22.45■■□□□ 1.18
COL12A1Q99715 TYMP-201ENST00000252029 1630 ntAPPRIS P3 TSL 1 (best) BASIC22.45■■□□□ 1.18
COL12A1Q99715 ABHD17A-202ENST00000292577 1757 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
COL12A1Q99715 STUB1-205ENST00000565677 1560 ntTSL 1 (best) BASIC22.45■■□□□ 1.18
COL12A1Q99715 ZNF419-210ENST00000520540 568 ntTSL 4 BASIC22.45■■□□□ 1.18
COL12A1Q99715 AC104002.3-202ENST00000557170 1100 ntTSL 3 BASIC22.45■■□□□ 1.18
COL12A1Q99715 ADRA1D-201ENST00000379453 2728 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
COL12A1Q99715 TRIOBP-205ENST00000407319 2125 ntAPPRIS P3 TSL 1 (best) BASIC22.44■■□□□ 1.18
COL12A1Q99715 UBE2D2-205ENST00000505548 1113 ntTSL 1 (best) BASIC22.44■■□□□ 1.18
COL12A1Q99715 MSX1-201ENST00000382723 1939 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.18
COL12A1Q99715 MAP4K3-211ENST00000484274 407 ntTSL 2 BASIC22.44■■□□□ 1.18
COL12A1Q99715 AC064853.4-201ENST00000641394 363 ntAPPRIS P1 BASIC22.44■■□□□ 1.18
COL12A1Q99715 ZNF470-206ENST00000601902 1640 ntTSL 1 (best) BASIC22.43■■□□□ 1.18
COL12A1Q99715 CHST12-204ENST00000618655 2131 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
COL12A1Q99715 C16orf52-207ENST00000569656 1257 ntTSL 5 BASIC22.43■■□□□ 1.18
COL12A1Q99715 PPP3CC-204ENST00000518852 1598 ntTSL 2 BASIC22.43■■□□□ 1.18
COL12A1Q99715 FAM173A-202ENST00000564000 1088 ntAPPRIS ALT2 TSL 2 BASIC22.43■■□□□ 1.18
COL12A1Q99715 LAT-217ENST00000630764 610 ntAPPRIS ALT2 TSL 5 BASIC22.43■■□□□ 1.18
COL12A1Q99715 SHISA8-202ENST00000621082 1405 ntAPPRIS P2 TSL 5 BASIC22.43■■□□□ 1.18
COL12A1Q99715 AC110285.7-201ENST00000624417 1536 ntBASIC22.43■■□□□ 1.18
COL12A1Q99715 RFLNA-202ENST00000338359 652 ntAPPRIS P2 TSL 1 (best) BASIC22.42■■□□□ 1.18
COL12A1Q99715 MTCP1-202ENST00000369476 2274 ntAPPRIS P1 TSL 3 BASIC22.42■■□□□ 1.18
COL12A1Q99715 AC026202.3-201ENST00000600805 1127 ntBASIC22.42■■□□□ 1.18
COL12A1Q99715 LRP11-202ENST00000367368 1042 ntTSL 2 BASIC22.42■■□□□ 1.18
COL12A1Q99715 AC139795.1-203ENST00000515045 853 ntTSL 2 BASIC22.42■■□□□ 1.18
COL12A1Q99715 HIST1H2AL-201ENST00000613174 393 ntAPPRIS P1 BASIC22.42■■□□□ 1.18
COL12A1Q99715 PRMT5-228ENST00000627278 129 ntTSL 5 BASIC22.42■■□□□ 1.18
COL12A1Q99715 PELI3-203ENST00000524466 1671 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
COL12A1Q99715 DCDC2C-201ENST00000399143 1476 ntAPPRIS P1 TSL 5 BASIC22.41■■□□□ 1.18
COL12A1Q99715 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
COL12A1Q99715 PKNOX2-AS1-201ENST00000532316 586 ntTSL 3 BASIC22.41■■□□□ 1.18
COL12A1Q99715 PRTG-204ENST00000561292 833 ntTSL 3 BASIC22.41■■□□□ 1.18
COL12A1Q99715 MIR4508-201ENST00000584178 70 ntBASIC22.4■■□□□ 1.18
COL12A1Q99715 PPP4C-201ENST00000279387 1407 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
COL12A1Q99715 TUBB6-201ENST00000317702 2064 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
COL12A1Q99715 AL160276.1-201ENST00000636672 1312 ntAPPRIS P1 TSL 5 BASIC22.39■■□□□ 1.18
COL12A1Q99715 AC010864.1-201ENST00000609407 1511 ntBASIC22.39■■□□□ 1.17
COL12A1Q99715 FLVCR1-AS1-203ENST00000426161 892 ntTSL 1 (best) BASIC22.39■■□□□ 1.17
COL12A1Q99715 CFD-202ENST00000592860 809 ntAPPRIS ALT2 TSL 1 (best) BASIC22.39■■□□□ 1.17
COL12A1Q99715 GKAP1-203ENST00000376371 1778 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
COL12A1Q99715 CDKN2A-214ENST00000579755 1283 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
COL12A1Q99715 SPATA33-209ENST00000579310 1490 ntAPPRIS ALT2 TSL 2 BASIC22.38■■□□□ 1.17
COL12A1Q99715 CDKN3-207ENST00000543789 610 ntTSL 5 BASIC22.38■■□□□ 1.17
COL12A1Q99715 RAP2CP1-202ENST00000605179 643 ntBASIC22.38■■□□□ 1.17
COL12A1Q99715 MED25-210ENST00000612854 801 ntTSL 5 BASIC22.38■■□□□ 1.17
COL12A1Q99715 MED25-213ENST00000620467 1293 ntTSL 1 (best) BASIC22.38■■□□□ 1.17
COL12A1Q99715 MED25-214ENST00000622402 642 ntTSL 5 BASIC22.38■■□□□ 1.17
COL12A1Q99715 IZUMO4-202ENST00000395301 1021 ntAPPRIS ALT2 TSL 1 (best) BASIC22.37■■□□□ 1.17
Retrieved 100 of 98,524 protein–RNA pairs in 98.1 ms