Protein–RNA interactions for Protein: Q96N23

CFAP54, Cilia- and flagella-associated protein 54, humanhuman

Predictions only

Length 3,096 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CFAP54Q96N23 AC133552.2-201ENST00000619106 1032 ntBASIC25.19■■□□□ 1.62
CFAP54Q96N23 HM13-AS1-201ENST00000412178 489 ntTSL 3 BASIC25.18■■□□□ 1.62
CFAP54Q96N23 CCZ1-201ENST00000325974 1802 ntAPPRIS P1 TSL 1 (best) BASIC25.18■■□□□ 1.62
CFAP54Q96N23 ZNF419-210ENST00000520540 568 ntTSL 4 BASIC25.18■■□□□ 1.62
CFAP54Q96N23 EPM2A-202ENST00000435470 1278 ntTSL 1 (best) BASIC25.18■■□□□ 1.62
CFAP54Q96N23 AC103724.3-201ENST00000564481 992 ntBASIC25.18■■□□□ 1.62
CFAP54Q96N23 PCMTD2-202ENST00000299468 1049 ntTSL 5 BASIC25.16■■□□□ 1.62
CFAP54Q96N23 YBX1P4-201ENST00000392794 808 ntBASIC25.16■■□□□ 1.62
CFAP54Q96N23 EMID1-201ENST00000334018 2173 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
CFAP54Q96N23 TSPAN3-203ENST00000424443 1530 ntTSL 2 BASIC25.15■■□□□ 1.62
CFAP54Q96N23 RHOBTB3-206ENST00000506817 1432 ntTSL 2 BASIC25.15■■□□□ 1.62
CFAP54Q96N23 PLA2G10-201ENST00000438167 1000 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.61
CFAP54Q96N23 AC239859.2-201ENST00000444165 318 ntBASIC25.14■■□□□ 1.61
CFAP54Q96N23 RASSF7-202ENST00000397583 1928 ntAPPRIS P3 TSL 1 (best) BASIC25.13■■□□□ 1.61
CFAP54Q96N23 CDKN3-207ENST00000543789 610 ntTSL 5 BASIC25.13■■□□□ 1.61
CFAP54Q96N23 GAL3ST3-203ENST00000527878 1599 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
CFAP54Q96N23 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC25.13■■□□□ 1.61
CFAP54Q96N23 PKNOX2-AS1-201ENST00000532316 586 ntTSL 3 BASIC25.13■■□□□ 1.61
CFAP54Q96N23 MIR6765-201ENST00000614092 87 ntBASIC25.13■■□□□ 1.61
CFAP54Q96N23 MOB2-207ENST00000614710 705 ntTSL 5 BASIC25.12■■□□□ 1.61
CFAP54Q96N23 VPS37D-201ENST00000324941 1624 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
CFAP54Q96N23 CD63-201ENST00000257857 1070 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
CFAP54Q96N23 RFLNA-202ENST00000338359 652 ntAPPRIS P2 TSL 1 (best) BASIC25.11■■□□□ 1.61
CFAP54Q96N23 TMEM229A-201ENST00000455783 2108 ntAPPRIS P1 BASIC25.11■■□□□ 1.61
CFAP54Q96N23 CLEC11A-201ENST00000250340 1419 ntAPPRIS P1 TSL 1 (best) BASIC25.11■■□□□ 1.61
CFAP54Q96N23 KCTD15-206ENST00000588881 1211 ntAPPRIS P1 TSL 2 BASIC25.11■■□□□ 1.61
CFAP54Q96N23 DEXI-202ENST00000469379 1393 ntAPPRIS P1 TSL 2 BASIC25.1■■□□□ 1.61
CFAP54Q96N23 SNTG2-201ENST00000308624 1888 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
CFAP54Q96N23 LRP11-202ENST00000367368 1042 ntTSL 2 BASIC25.1■■□□□ 1.61
CFAP54Q96N23 SMPD5-203ENST00000639008 1464 ntBASIC25.1■■□□□ 1.61
CFAP54Q96N23 CDKN2A-214ENST00000579755 1283 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
CFAP54Q96N23 PRTG-204ENST00000561292 833 ntTSL 3 BASIC25.09■■□□□ 1.61
CFAP54Q96N23 UCK1-201ENST00000372208 2063 ntTSL 1 (best) BASIC25.09■■□□□ 1.61
CFAP54Q96N23 AC104002.3-202ENST00000557170 1100 ntTSL 3 BASIC25.09■■□□□ 1.61
CFAP54Q96N23 CAPNS1-205ENST00000588780 1035 ntAPPRIS ALT2 TSL 5 BASIC25.09■■□□□ 1.61
CFAP54Q96N23 UBE2E3-213ENST00000602959 909 ntAPPRIS P1 TSL 5 BASIC25.09■■□□□ 1.61
CFAP54Q96N23 LAT-217ENST00000630764 610 ntAPPRIS ALT2 TSL 5 BASIC25.09■■□□□ 1.61
CFAP54Q96N23 EBAG9-202ENST00000395785 1467 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
CFAP54Q96N23 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC25.08■■□□□ 1.61
CFAP54Q96N23 FOXB2-201ENST00000376708 1299 ntAPPRIS P1 BASIC25.08■■□□□ 1.61
CFAP54Q96N23 ARHGEF7-AS2-201ENST00000425094 1239 ntTSL 1 (best) BASIC25.08■■□□□ 1.61
CFAP54Q96N23 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC25.08■■□□□ 1.61
CFAP54Q96N23 AL160276.1-201ENST00000636672 1312 ntAPPRIS P1 TSL 5 BASIC25.08■■□□□ 1.61
CFAP54Q96N23 UBE2D2-205ENST00000505548 1113 ntTSL 1 (best) BASIC25.08■■□□□ 1.6
CFAP54Q96N23 AC139795.1-203ENST00000515045 853 ntTSL 2 BASIC25.08■■□□□ 1.6
CFAP54Q96N23 TMEM170A-202ENST00000561878 1072 ntAPPRIS P1 TSL 1 (best) BASIC25.08■■□□□ 1.6
CFAP54Q96N23 AC009163.4-201ENST00000567194 530 ntAPPRIS P1 TSL 2 BASIC25.08■■□□□ 1.6
CFAP54Q96N23 MIR4508-201ENST00000584178 70 ntBASIC25.08■■□□□ 1.6
CFAP54Q96N23 C11orf63-202ENST00000307257 1964 ntTSL 2 BASIC25.07■■□□□ 1.6
CFAP54Q96N23 SLC2A4RG-201ENST00000266077 1731 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
CFAP54Q96N23 GSR-205ENST00000541648 1410 ntTSL 1 (best) BASIC25.07■■□□□ 1.6
CFAP54Q96N23 FAM173A-202ENST00000564000 1088 ntAPPRIS ALT2 TSL 2 BASIC25.06■■□□□ 1.6
CFAP54Q96N23 FAM78B-201ENST00000338353 1597 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
CFAP54Q96N23 GATA6-202ENST00000581694 2057 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
CFAP54Q96N23 MAFA-201ENST00000333480 2347 ntAPPRIS P1 BASIC25.06■■□□□ 1.6
CFAP54Q96N23 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC25.06■■□□□ 1.6
CFAP54Q96N23 MAP4K3-211ENST00000484274 407 ntTSL 2 BASIC25.05■■□□□ 1.6
CFAP54Q96N23 AC064853.4-201ENST00000641394 363 ntAPPRIS P1 BASIC25.05■■□□□ 1.6
CFAP54Q96N23 LSM6-202ENST00000502781 1352 ntAPPRIS P1 TSL 1 (best) BASIC25.05■■□□□ 1.6
CFAP54Q96N23 C16orf52-207ENST00000569656 1257 ntTSL 5 BASIC25.04■■□□□ 1.6
CFAP54Q96N23 ANGPTL6-204ENST00000592641 1781 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
CFAP54Q96N23 FTCD-202ENST00000397743 1834 ntTSL 1 (best) BASIC25.04■■□□□ 1.6
CFAP54Q96N23 CFD-202ENST00000592860 809 ntAPPRIS ALT2 TSL 1 (best) BASIC25.04■■□□□ 1.6
CFAP54Q96N23 TSPAN11-203ENST00000545802 1649 ntTSL 1 (best) BASIC25.03■■□□□ 1.6
CFAP54Q96N23 PI4KAP1-202ENST00000611748 1906 ntTSL 1 (best) BASIC25.03■■□□□ 1.6
CFAP54Q96N23 PRMT5-228ENST00000627278 129 ntTSL 5 BASIC25.03■■□□□ 1.6
CFAP54Q96N23 AC145124.1-201ENST00000528514 1361 ntTSL 2 BASIC25.03■■□□□ 1.6
CFAP54Q96N23 EPB41L4A-AS2-201ENST00000623705 1396 ntBASIC25.03■■□□□ 1.6
CFAP54Q96N23 FLVCR1-AS1-203ENST00000426161 892 ntTSL 1 (best) BASIC25.03■■□□□ 1.6
CFAP54Q96N23 AC074183.2-201ENST00000623112 922 ntBASIC25.03■■□□□ 1.6
CFAP54Q96N23 SHISA8-202ENST00000621082 1405 ntAPPRIS P2 TSL 5 BASIC25.03■■□□□ 1.6
CFAP54Q96N23 ARL8A-204ENST00000614750 1727 ntTSL 3 BASIC25.03■■□□□ 1.6
CFAP54Q96N23 RPS2-210ENST00000530225 765 ntTSL 2 BASIC25.02■■□□□ 1.6
CFAP54Q96N23 MIR1-1HG-202ENST00000624914 1220 ntTSL 1 (best) BASIC25.02■■□□□ 1.6
CFAP54Q96N23 FSD1L-204ENST00000469022 1836 ntTSL 1 (best) BASIC25.02■■□□□ 1.6
CFAP54Q96N23 PYCARD-202ENST00000350605 696 ntTSL 1 (best) BASIC25.01■■□□□ 1.6
CFAP54Q96N23 SERTAD4-AS1-202ENST00000475406 591 ntTSL 2 BASIC25.01■■□□□ 1.6
CFAP54Q96N23 NPTXR-202ENST00000640136 1503 ntAPPRIS P2 TSL 1 (best) BASIC25.01■■□□□ 1.59
CFAP54Q96N23 MT1E-201ENST00000306061 704 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.59
CFAP54Q96N23 HOMER3-202ENST00000392351 1557 ntAPPRIS P3 TSL 1 (best) BASIC25.01■■□□□ 1.59
CFAP54Q96N23 DTWD2-204ENST00000515439 1275 ntTSL 5 BASIC25■■□□□ 1.59
CFAP54Q96N23 RARRES2P6-201ENST00000567333 442 ntBASIC25■■□□□ 1.59
CFAP54Q96N23 JMJD8-216ENST00000609261 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC25■■□□□ 1.59
CFAP54Q96N23 TYMP-201ENST00000252029 1630 ntAPPRIS P3 TSL 1 (best) BASIC25■■□□□ 1.59
CFAP54Q96N23 TTC36-201ENST00000302783 874 ntAPPRIS P1 TSL 1 (best) BASIC25■■□□□ 1.59
CFAP54Q96N23 Z92544.1-202ENST00000571933 1220 ntBASIC25■■□□□ 1.59
CFAP54Q96N23 CCDC194-202ENST00000636079 705 ntAPPRIS P1 TSL 5 BASIC25■■□□□ 1.59
CFAP54Q96N23 PEMT-201ENST00000255389 1013 ntTSL 1 (best) BASIC24.99■■□□□ 1.59
CFAP54Q96N23 FKBP1B-202ENST00000380991 1010 ntTSL 1 (best) BASIC24.99■■□□□ 1.59
CFAP54Q96N23 AC026202.3-201ENST00000600805 1127 ntBASIC24.99■■□□□ 1.59
CFAP54Q96N23 SLC15A4-201ENST00000266771 2779 ntAPPRIS P1 TSL 1 (best) BASIC24.98■■□□□ 1.59
CFAP54Q96N23 RASSF8-202ENST00000381352 2320 ntTSL 1 (best) BASIC24.98■■□□□ 1.59
CFAP54Q96N23 PABPC1L-202ENST00000217074 1263 ntTSL 5 BASIC24.98■■□□□ 1.59
CFAP54Q96N23 GRAMD4P7-201ENST00000578182 1232 ntBASIC24.98■■□□□ 1.59
CFAP54Q96N23 PVT1_1.1-201ENST00000615125 194 ntBASIC24.98■■□□□ 1.59
CFAP54Q96N23 AL139246.5-201ENST00000606645 996 ntBASIC24.98■■□□□ 1.59
CFAP54Q96N23 ZBTB12-201ENST00000375527 1875 ntAPPRIS P1 TSL 1 (best) BASIC24.98■■□□□ 1.59
CFAP54Q96N23 CRELD2-203ENST00000404488 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC24.97■■□□□ 1.59
CFAP54Q96N23 GSX2-202ENST00000503800 1181 ntTSL 5 BASIC24.97■■□□□ 1.59
CFAP54Q96N23 BOD1-202ENST00000311086 1562 ntAPPRIS P1 TSL 1 (best) BASIC24.97■■□□□ 1.59
Retrieved 100 of 98,524 protein–RNA pairs in 100.8 ms