Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 AGPS-202ENST00000409888 815 ntTSL 4 BASIC25.86■■□□□ 1.73
SHROOM3Q8TF72 DUX4L11-201ENST00000611504 1267 ntBASIC25.86■■□□□ 1.73
SHROOM3Q8TF72 DUX4L12-201ENST00000614593 1267 ntBASIC25.86■■□□□ 1.73
SHROOM3Q8TF72 DUX4L14-201ENST00000621227 1267 ntBASIC25.86■■□□□ 1.73
SHROOM3Q8TF72 GDI1-215ENST00000630693 786 ntTSL 4 BASIC25.86■■□□□ 1.73
SHROOM3Q8TF72 BX255925.1-201ENST00000566954 1854 ntBASIC25.85■■□□□ 1.73
SHROOM3Q8TF72 PLEKHF1-201ENST00000436066 2084 ntAPPRIS P1 TSL 1 (best) BASIC25.84■■□□□ 1.73
SHROOM3Q8TF72 DTNBP1-212ENST00000622898 1305 ntTSL 1 (best) BASIC25.84■■□□□ 1.73
SHROOM3Q8TF72 BCAP31-201ENST00000345046 1589 ntAPPRIS P1 TSL 1 (best) BASIC25.84■■□□□ 1.73
SHROOM3Q8TF72 ING2-201ENST00000302327 1189 ntAPPRIS P1 TSL 1 (best) BASIC25.84■■□□□ 1.73
SHROOM3Q8TF72 HSD17B1P1-201ENST00000590052 955 ntBASIC25.84■■□□□ 1.73
SHROOM3Q8TF72 CDH24-206ENST00000610348 2037 ntTSL 1 (best) BASIC25.84■■□□□ 1.73
SHROOM3Q8TF72 SLC35D2-203ENST00000375259 1361 ntTSL 1 (best) BASIC25.83■■□□□ 1.73
SHROOM3Q8TF72 AL121987.2-201ENST00000418602 1578 ntTSL 2 BASIC25.83■■□□□ 1.73
SHROOM3Q8TF72 TMEM55B-202ENST00000398020 1696 ntAPPRIS ALT1 TSL 1 (best) BASIC25.82■■□□□ 1.72
SHROOM3Q8TF72 CTXN1-201ENST00000318978 1274 ntAPPRIS P1 TSL 1 (best) BASIC25.82■■□□□ 1.72
SHROOM3Q8TF72 EXOC3-209ENST00000512944 2825 ntAPPRIS P1 TSL 1 (best) BASIC25.82■■□□□ 1.72
SHROOM3Q8TF72 R3HDM4-208ENST00000626716 138 ntTSL 5 BASIC25.82■■□□□ 1.72
SHROOM3Q8TF72 AC110285.7-201ENST00000624417 1536 ntBASIC25.82■■□□□ 1.72
SHROOM3Q8TF72 TMEM147-202ENST00000392204 935 ntTSL 2 BASIC25.81■■□□□ 1.72
SHROOM3Q8TF72 CAAP1-205ENST00000520187 773 ntTSL 5 BASIC25.81■■□□□ 1.72
SHROOM3Q8TF72 RNF166-209ENST00000567844 633 ntTSL 5 BASIC25.81■■□□□ 1.72
SHROOM3Q8TF72 RP9-201ENST00000297157 1121 ntAPPRIS P2 TSL 1 (best) BASIC25.8■■□□□ 1.72
SHROOM3Q8TF72 RHEB-201ENST00000262187 2075 ntAPPRIS P1 TSL 1 (best) BASIC25.8■■□□□ 1.72
SHROOM3Q8TF72 ACAA1-220ENST00000627515 1862 ntTSL 5 BASIC25.79■■□□□ 1.72
SHROOM3Q8TF72 HDHD5-202ENST00000336737 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC25.79■■□□□ 1.72
SHROOM3Q8TF72 EBPL-201ENST00000242827 914 ntAPPRIS P1 TSL 1 (best) BASIC25.79■■□□□ 1.72
SHROOM3Q8TF72 C14orf80-203ENST00000354560 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC25.79■■□□□ 1.72
SHROOM3Q8TF72 MIR3648-2-201ENST00000581792 180 ntBASIC25.78■■□□□ 1.72
SHROOM3Q8TF72 MIR3648-1-201ENST00000615959 180 ntBASIC25.78■■□□□ 1.72
SHROOM3Q8TF72 APLP1-201ENST00000221891 2495 ntAPPRIS P1 TSL 1 (best) BASIC25.78■■□□□ 1.72
SHROOM3Q8TF72 C11orf80-218ENST00000540737 1786 ntAPPRIS ALT2 TSL 2 BASIC25.78■■□□□ 1.72
SHROOM3Q8TF72 TSPAN3-203ENST00000424443 1530 ntTSL 2 BASIC25.78■■□□□ 1.72
SHROOM3Q8TF72 U2AF1-203ENST00000398137 1019 ntTSL 1 (best) BASIC25.78■■□□□ 1.72
SHROOM3Q8TF72 U2AF1L5-212ENST00000639996 1019 ntTSL 1 (best) BASIC25.78■■□□□ 1.72
SHROOM3Q8TF72 CARM1-202ENST00000344150 2722 ntAPPRIS ALT2 TSL 5 BASIC25.78■■□□□ 1.72
SHROOM3Q8TF72 IHH-201ENST00000295731 2023 ntAPPRIS P1 TSL 1 (best) BASIC25.77■■□□□ 1.72
SHROOM3Q8TF72 AC016575.1-201ENST00000607026 382 ntBASIC25.77■■□□□ 1.72
SHROOM3Q8TF72 P2RX2-203ENST00000350048 1344 ntTSL 1 (best) BASIC25.77■■□□□ 1.72
SHROOM3Q8TF72 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC25.76■■□□□ 1.72
SHROOM3Q8TF72 TRADD-201ENST00000345057 1877 ntAPPRIS P1 TSL 1 (best) BASIC25.76■■□□□ 1.71
SHROOM3Q8TF72 TNIP2-201ENST00000315423 1974 ntAPPRIS P3 TSL 1 (best) BASIC25.76■■□□□ 1.71
SHROOM3Q8TF72 C17orf97-201ENST00000360127 1839 ntAPPRIS P2 TSL 1 (best) BASIC25.76■■□□□ 1.71
SHROOM3Q8TF72 MIR639-201ENST00000384974 98 ntBASIC25.75■■□□□ 1.71
SHROOM3Q8TF72 TSPAN4-207ENST00000397411 1025 ntAPPRIS P1 TSL 2 BASIC25.75■■□□□ 1.71
SHROOM3Q8TF72 DHRS13-202ENST00000394901 2037 ntTSL 1 (best) BASIC25.75■■□□□ 1.71
SHROOM3Q8TF72 TMEM55B-201ENST00000250489 1961 ntAPPRIS P3 TSL 1 (best) BASIC25.75■■□□□ 1.71
SHROOM3Q8TF72 NTN3-201ENST00000293973 1986 ntAPPRIS P1 TSL 1 (best) BASIC25.75■■□□□ 1.71
SHROOM3Q8TF72 RPS2-210ENST00000530225 765 ntTSL 2 BASIC25.75■■□□□ 1.71
SHROOM3Q8TF72 BRD4-212ENST00000630599 726 ntTSL 2 BASIC25.75■■□□□ 1.71
SHROOM3Q8TF72 EMID1-202ENST00000404755 2049 ntTSL 5 BASIC25.73■■□□□ 1.71
SHROOM3Q8TF72 AURKAIP1-203ENST00000338370 1072 ntAPPRIS P1 TSL 1 (best) BASIC25.73■■□□□ 1.71
SHROOM3Q8TF72 AC148477.6-201ENST00000623746 465 ntBASIC25.73■■□□□ 1.71
SHROOM3Q8TF72 SPATA33-209ENST00000579310 1490 ntAPPRIS ALT2 TSL 2 BASIC25.73■■□□□ 1.71
SHROOM3Q8TF72 KRT18-201ENST00000388835 1562 ntAPPRIS P1 TSL 1 (best) BASIC25.72■■□□□ 1.71
SHROOM3Q8TF72 HIST2H3C-201ENST00000369158 1656 ntAPPRIS P1 BASIC25.72■■□□□ 1.71
SHROOM3Q8TF72 HIST2H3A-201ENST00000403683 1656 ntAPPRIS P1 BASIC25.72■■□□□ 1.71
SHROOM3Q8TF72 ATP8B2-201ENST00000368487 1523 ntTSL 1 (best) BASIC25.71■■□□□ 1.71
SHROOM3Q8TF72 IGFBPL1-201ENST00000377694 1093 ntAPPRIS P1 TSL 2 BASIC25.71■■□□□ 1.71
SHROOM3Q8TF72 HDGFL1-201ENST00000510882 2174 ntAPPRIS P1 BASIC25.71■■□□□ 1.71
SHROOM3Q8TF72 TCFL5-201ENST00000217162 2453 ntAPPRIS ALT2 TSL 1 (best) BASIC25.71■■□□□ 1.71
SHROOM3Q8TF72 TCFL5-202ENST00000335351 2456 ntAPPRIS P2 TSL 1 (best) BASIC25.71■■□□□ 1.71
SHROOM3Q8TF72 C9orf50-201ENST00000372478 1620 ntAPPRIS P2 TSL 2 BASIC25.7■■□□□ 1.7
SHROOM3Q8TF72 POLR3H-201ENST00000337566 1330 ntTSL 1 (best) BASIC25.69■■□□□ 1.7
SHROOM3Q8TF72 PSMG1-201ENST00000331573 2154 ntAPPRIS P1 TSL 1 (best) BASIC25.69■■□□□ 1.7
SHROOM3Q8TF72 UCK1-204ENST00000372215 2167 ntAPPRIS P1 TSL 1 (best) BASIC25.69■■□□□ 1.7
SHROOM3Q8TF72 C16orf95-205ENST00000567970 1031 ntAPPRIS ALT2 TSL 5 BASIC25.69■■□□□ 1.7
SHROOM3Q8TF72 PICK1-201ENST00000356976 2055 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
SHROOM3Q8TF72 DNAJC21-201ENST00000342382 2309 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
SHROOM3Q8TF72 SLC25A6-201ENST00000381401 2062 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
SHROOM3Q8TF72 ZNF639-209ENST00000496856 2033 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
SHROOM3Q8TF72 ANKRD53-203ENST00000441349 1797 ntTSL 5 BASIC25.68■■□□□ 1.7
SHROOM3Q8TF72 GADD45G-201ENST00000252506 1065 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
SHROOM3Q8TF72 PIK3R2-207ENST00000617130 2187 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
SHROOM3Q8TF72 CLDND1-226ENST00000513287 999 ntAPPRIS P1 TSL 2 BASIC25.67■■□□□ 1.7
SHROOM3Q8TF72 F8A1-201ENST00000610495 1713 ntAPPRIS P1 BASIC25.67■■□□□ 1.7
SHROOM3Q8TF72 MFSD12-201ENST00000355415 2124 ntAPPRIS P3 TSL 1 (best) BASIC25.66■■□□□ 1.7
SHROOM3Q8TF72 MACF1-219ENST00000484793 834 ntTSL 2 BASIC25.66■■□□□ 1.7
SHROOM3Q8TF72 FBXL8-206ENST00000519917 1460 ntAPPRIS P1 TSL 5 BASIC25.66■■□□□ 1.7
SHROOM3Q8TF72 NDEL1-202ENST00000380025 2181 ntTSL 5 BASIC25.66■■□□□ 1.7
SHROOM3Q8TF72 GNPTG-204ENST00000527137 386 ntTSL 2 BASIC25.65■■□□□ 1.7
SHROOM3Q8TF72 AC018755.3-201ENST00000598755 664 ntTSL 2 BASIC25.65■■□□□ 1.7
SHROOM3Q8TF72 CD6-206ENST00000452451 1782 ntAPPRIS ALT2 TSL 1 (best) BASIC25.65■■□□□ 1.7
SHROOM3Q8TF72 HES6-205ENST00000409356 528 ntTSL 2 BASIC25.65■■□□□ 1.7
SHROOM3Q8TF72 C8orf58-202ENST00000409586 2021 ntAPPRIS ALT2 TSL 2 BASIC25.64■■□□□ 1.7
SHROOM3Q8TF72 CPTP-201ENST00000343938 2190 ntAPPRIS P1 TSL 2 BASIC25.64■■□□□ 1.7
SHROOM3Q8TF72 GSR-205ENST00000541648 1410 ntTSL 1 (best) BASIC25.64■■□□□ 1.7
SHROOM3Q8TF72 RFFL-206ENST00000447669 2030 ntAPPRIS P1 TSL 5 BASIC25.64■■□□□ 1.69
SHROOM3Q8TF72 ARPC2-201ENST00000295685 1605 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.69
SHROOM3Q8TF72 C9orf40-201ENST00000376854 2327 ntAPPRIS P1 TSL 1 (best) BASIC25.62■■□□□ 1.69
SHROOM3Q8TF72 FAAP20-202ENST00000378546 729 ntAPPRIS P1 TSL 1 (best) BASIC25.62■■□□□ 1.69
SHROOM3Q8TF72 SETBP1-202ENST00000426838 1785 ntAPPRIS ALT2 TSL 1 (best) BASIC25.62■■□□□ 1.69
SHROOM3Q8TF72 TANGO2-214ENST00000447208 2086 ntTSL 3 BASIC25.62■■□□□ 1.69
SHROOM3Q8TF72 AL121749.1-202ENST00000609313 2153 ntBASIC25.62■■□□□ 1.69
SHROOM3Q8TF72 PWWP2B-201ENST00000305233 2651 ntAPPRIS P1 TSL 1 (best) BASIC25.62■■□□□ 1.69
SHROOM3Q8TF72 NELFB-202ENST00000634710 1887 ntAPPRIS P2 TSL 1 (best) BASIC25.61■■□□□ 1.69
SHROOM3Q8TF72 PPP4R4-202ENST00000328839 876 ntTSL 1 (best) BASIC25.61■■□□□ 1.69
SHROOM3Q8TF72 RAD21-AS1-201ENST00000521487 2010 ntTSL 1 (best) BASIC25.61■■□□□ 1.69
SHROOM3Q8TF72 PLEKHF2-202ENST00000519516 1144 ntAPPRIS P1 TSL 3 BASIC25.6■■□□□ 1.69
SHROOM3Q8TF72 AC073111.5-206ENST00000642087 859 ntAPPRIS P1 BASIC25.6■■□□□ 1.69
Retrieved 100 of 98,524 protein–RNA pairs in 43 ms