Protein–RNA interactions for Protein: Q8BY87

Usp47, Ubiquitin carboxyl-terminal hydrolase 47, mousemouse

Predictions only

Length 1,376 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp47Q8BY87 Trappc6b-201ENSMUST00000021380 1255 ntAPPRIS P1 TSL 1 (best) BASIC33.07■■■□□ 2.88
Usp47Q8BY87 Gadd45a-201ENSMUST00000043098 1223 ntAPPRIS P1 TSL 1 (best) BASIC33.06■■■□□ 2.88
Usp47Q8BY87 Ccna1-202ENSMUST00000197238 1719 ntAPPRIS P1 TSL 5 BASIC33.05■■■□□ 2.88
Usp47Q8BY87 Gm9806-201ENSMUST00000051080 552 ntBASIC33.05■■■□□ 2.88
Usp47Q8BY87 Gjd3-201ENSMUST00000062931 837 ntAPPRIS P1 BASIC33.05■■■□□ 2.88
Usp47Q8BY87 Unc119-203ENSMUST00000108295 1371 ntTSL 3 BASIC33.04■■■□□ 2.88
Usp47Q8BY87 Hook1-202ENSMUST00000107083 1506 ntTSL 1 (best) BASIC33.04■■■□□ 2.88
Usp47Q8BY87 Eva1b-202ENSMUST00000106150 1144 ntAPPRIS P1 TSL 1 (best) BASIC33.04■■■□□ 2.88
Usp47Q8BY87 Gm4419-202ENSMUST00000226239 1431 ntBASIC33.04■■■□□ 2.88
Usp47Q8BY87 E2f6-201ENSMUST00000020908 2418 ntAPPRIS P1 TSL 1 (best) BASIC33.04■■■□□ 2.88
Usp47Q8BY87 Cadm1-209ENSMUST00000152459 1784 ntTSL 1 (best) BASIC33.03■■■□□ 2.88
Usp47Q8BY87 Crct1-201ENSMUST00000029521 718 ntAPPRIS P1 TSL 1 (best) BASIC33.03■■■□□ 2.88
Usp47Q8BY87 Kcna7-201ENSMUST00000107774 2182 ntAPPRIS P1 TSL 1 (best) BASIC33.03■■■□□ 2.88
Usp47Q8BY87 Adra1d-201ENSMUST00000103184 1899 ntAPPRIS P1 TSL 1 (best) BASIC33.01■■■□□ 2.87
Usp47Q8BY87 Acvr2b-201ENSMUST00000035093 1729 ntTSL 5 BASIC33.01■■■□□ 2.87
Usp47Q8BY87 Rnf115-201ENSMUST00000029740 2209 ntAPPRIS P1 TSL 1 (best) BASIC33■■■□□ 2.87
Usp47Q8BY87 A030005K14Rik-201ENSMUST00000193762 1093 ntAPPRIS P1 BASIC33■■■□□ 2.87
Usp47Q8BY87 Ndufs3-201ENSMUST00000005647 1046 ntAPPRIS P1 TSL 1 (best) BASIC33■■■□□ 2.87
Usp47Q8BY87 Fam149b-203ENSMUST00000090499 2370 ntAPPRIS P4 TSL 1 (best) BASIC33■■■□□ 2.87
Usp47Q8BY87 Slc39a13-201ENSMUST00000073575 2469 ntAPPRIS P1 TSL 1 (best) BASIC33■■■□□ 2.87
Usp47Q8BY87 Igfbp3-202ENSMUST00000135887 1709 ntAPPRIS P1 TSL 1 (best) BASIC32.98■■■□□ 2.87
Usp47Q8BY87 Cys1-207ENSMUST00000186602 1757 ntAPPRIS P1 TSL 1 (best) BASIC32.98■■■□□ 2.87
Usp47Q8BY87 Xkr7-201ENSMUST00000037235 2711 ntAPPRIS P1 TSL 1 (best) BASIC32.96■■■□□ 2.87
Usp47Q8BY87 Eid1-201ENSMUST00000164756 1691 ntAPPRIS P1 BASIC32.96■■■□□ 2.87
Usp47Q8BY87 Stbd1-202ENSMUST00000200941 523 ntTSL 1 (best) BASIC32.96■■■□□ 2.87
Usp47Q8BY87 D030046N08Rik-201ENSMUST00000162318 1570 ntTSL 1 (best) BASIC32.95■■■□□ 2.87
Usp47Q8BY87 Six3-201ENSMUST00000162695 2838 ntAPPRIS ALT2 TSL 5 BASIC32.95■■■□□ 2.87
Usp47Q8BY87 Ybx3-202ENSMUST00000087865 1684 ntAPPRIS ALT2 TSL 1 (best) BASIC32.95■■■□□ 2.87
Usp47Q8BY87 Vegfb-202ENSMUST00000130048 1158 ntAPPRIS ALT2 TSL 1 (best) BASIC32.95■■■□□ 2.86
Usp47Q8BY87 Gm16437-201ENSMUST00000025669 507 ntBASIC32.95■■■□□ 2.86
Usp47Q8BY87 H2afy-202ENSMUST00000045788 1933 ntTSL 1 (best) BASIC32.94■■■□□ 2.86
Usp47Q8BY87 Gm11687-201ENSMUST00000118911 886 ntBASIC32.94■■■□□ 2.86
Usp47Q8BY87 Efna2-201ENSMUST00000003154 2131 ntAPPRIS P1 TSL 1 (best) BASIC32.94■■■□□ 2.86
Usp47Q8BY87 Panx2-202ENSMUST00000161372 2314 ntTSL 1 (best) BASIC32.92■■■□□ 2.86
Usp47Q8BY87 Gm16049-201ENSMUST00000155166 616 ntTSL 3 BASIC32.92■■■□□ 2.86
Usp47Q8BY87 AC125444.1-201ENSMUST00000223536 639 ntAPPRIS P1 BASIC32.92■■■□□ 2.86
Usp47Q8BY87 4930597O21Rik-201ENSMUST00000065878 984 ntTSL 1 (best) BASIC32.92■■■□□ 2.86
Usp47Q8BY87 Mpp6-209ENSMUST00000204545 2418 ntAPPRIS P1 TSL 5 BASIC32.91■■■□□ 2.86
Usp47Q8BY87 AC153911.1-201ENSMUST00000220378 758 ntBASIC32.91■■■□□ 2.86
Usp47Q8BY87 Cited2-203ENSMUST00000219558 2411 ntAPPRIS P1 BASIC32.91■■■□□ 2.86
Usp47Q8BY87 Kctd6-201ENSMUST00000022272 1650 ntAPPRIS P1 TSL 1 (best) BASIC32.91■■■□□ 2.86
Usp47Q8BY87 Prrx2-201ENSMUST00000041659 1441 ntAPPRIS P2 TSL 1 (best) BASIC32.9■■■□□ 2.86
Usp47Q8BY87 Tmpo-203ENSMUST00000092219 1854 ntTSL 1 (best) BASIC32.9■■■□□ 2.86
Usp47Q8BY87 Gm9910-201ENSMUST00000195385 1550 ntBASIC32.9■■■□□ 2.86
Usp47Q8BY87 Ube2h-201ENSMUST00000094543 975 ntTSL 1 (best) BASIC32.9■■■□□ 2.86
Usp47Q8BY87 Glrx3-201ENSMUST00000064404 1685 ntAPPRIS P2 TSL 1 (best) BASIC32.88■■■□□ 2.85
Usp47Q8BY87 Tnfsfm13-203ENSMUST00000180587 2235 ntAPPRIS P3 TSL 2 BASIC32.88■■■□□ 2.85
Usp47Q8BY87 Kansl2-201ENSMUST00000023727 2311 ntAPPRIS ALT2 TSL 5 BASIC32.87■■■□□ 2.85
Usp47Q8BY87 A530095I07Rik-201ENSMUST00000070942 847 ntTSL 1 (best) BASIC32.87■■■□□ 2.85
Usp47Q8BY87 A830010M20Rik-207ENSMUST00000162298 1408 ntTSL 5 BASIC32.87■■■□□ 2.85
Usp47Q8BY87 Arhgap9-203ENSMUST00000219026 1946 ntAPPRIS P2 TSL 1 (best) BASIC32.87■■■□□ 2.85
Usp47Q8BY87 Actr3b-202ENSMUST00000128727 2031 ntTSL 1 (best) BASIC32.87■■■□□ 2.85
Usp47Q8BY87 Vmac-201ENSMUST00000067931 2174 ntAPPRIS P3 TSL 1 (best) BASIC32.85■■■□□ 2.85
Usp47Q8BY87 Gng12-204ENSMUST00000114225 1876 ntAPPRIS P1 TSL 1 (best) BASIC32.85■■■□□ 2.85
Usp47Q8BY87 Upf3a-201ENSMUST00000043767 2057 ntAPPRIS P1 TSL 1 (best) BASIC32.85■■■□□ 2.85
Usp47Q8BY87 2810002D19Rik-201ENSMUST00000152313 2040 ntTSL 1 (best) BASIC32.85■■■□□ 2.85
Usp47Q8BY87 Hacd1-202ENSMUST00000091429 871 ntTSL 1 (best) BASIC32.84■■■□□ 2.85
Usp47Q8BY87 Psmb8-201ENSMUST00000025196 1628 ntAPPRIS P1 TSL 1 (best) BASIC32.83■■■□□ 2.85
Usp47Q8BY87 Gpr25-201ENSMUST00000086395 1077 ntAPPRIS P1 BASIC32.83■■■□□ 2.85
Usp47Q8BY87 Jmjd6-201ENSMUST00000047616 1668 ntAPPRIS P1 TSL 1 (best) BASIC32.82■■■□□ 2.84
Usp47Q8BY87 Kctd2-201ENSMUST00000103035 1764 ntAPPRIS P1 TSL 1 (best) BASIC32.82■■■□□ 2.84
Usp47Q8BY87 AC151971.4-201ENSMUST00000214717 704 ntBASIC32.82■■■□□ 2.84
Usp47Q8BY87 Ankrd49-205ENSMUST00000216037 1037 ntAPPRIS P1 TSL 2 BASIC32.82■■■□□ 2.84
Usp47Q8BY87 Mlf2-202ENSMUST00000180095 1475 ntAPPRIS P1 TSL 1 (best) BASIC32.82■■■□□ 2.84
Usp47Q8BY87 Csrp1-201ENSMUST00000027677 1823 ntAPPRIS P1 TSL 1 (best) BASIC32.81■■■□□ 2.84
Usp47Q8BY87 Csrp1-202ENSMUST00000097561 1828 ntAPPRIS P1 TSL 1 (best) BASIC32.81■■■□□ 2.84
Usp47Q8BY87 Terc-201ENSMUST00000082862 423 ntBASIC32.81■■■□□ 2.84
Usp47Q8BY87 Fra10ac1-201ENSMUST00000067167 1402 ntAPPRIS P1 TSL 1 (best) BASIC32.81■■■□□ 2.84
Usp47Q8BY87 Tceal6-201ENSMUST00000033783 1114 ntAPPRIS P1 TSL 1 (best) BASIC32.8■■■□□ 2.84
Usp47Q8BY87 Dctpp1-201ENSMUST00000035276 676 ntAPPRIS P1 TSL 1 (best) BASIC32.8■■■□□ 2.84
Usp47Q8BY87 Txndc9-207ENSMUST00000195032 1444 ntAPPRIS P1 TSL 2 BASIC32.8■■■□□ 2.84
Usp47Q8BY87 Fads2-201ENSMUST00000025567 1508 ntAPPRIS P1 TSL 1 (best) BASIC32.79■■■□□ 2.84
Usp47Q8BY87 Cox11-201ENSMUST00000020851 1224 ntAPPRIS P2 TSL 1 (best) BASIC32.79■■■□□ 2.84
Usp47Q8BY87 Hoxd9-201ENSMUST00000059272 2136 ntAPPRIS P1 TSL 1 (best) BASIC32.78■■■□□ 2.84
Usp47Q8BY87 Id3-201ENSMUST00000008016 1278 ntAPPRIS P1 TSL 1 (best) BASIC32.78■■■□□ 2.84
Usp47Q8BY87 Kif1c-205ENSMUST00000152618 1943 ntTSL 1 (best) BASIC32.77■■■□□ 2.84
Usp47Q8BY87 Vamp4-206ENSMUST00000150040 901 ntAPPRIS P1 TSL 5 BASIC32.77■■■□□ 2.84
Usp47Q8BY87 Dleu2-204ENSMUST00000182286 666 ntTSL 2 BASIC32.77■■■□□ 2.84
Usp47Q8BY87 Dleu2-213ENSMUST00000183245 637 ntTSL 1 (best) BASIC32.77■■■□□ 2.84
Usp47Q8BY87 Cln6-201ENSMUST00000034776 2142 ntAPPRIS P1 TSL 1 (best) BASIC32.76■■■□□ 2.84
Usp47Q8BY87 Arpc2-201ENSMUST00000006467 1404 ntAPPRIS P1 TSL 1 (best) BASIC32.76■■■□□ 2.84
Usp47Q8BY87 2310061I04Rik-202ENSMUST00000146451 2081 ntTSL 1 (best) BASIC32.76■■■□□ 2.84
Usp47Q8BY87 Klhl15-203ENSMUST00000113911 1227 ntTSL 1 (best) BASIC32.76■■■□□ 2.83
Usp47Q8BY87 Psmg1-201ENSMUST00000023630 1044 ntAPPRIS P1 TSL 1 (best) BASIC32.76■■■□□ 2.83
Usp47Q8BY87 Runx2os1-201ENSMUST00000097320 792 ntTSL 1 (best) BASIC32.76■■■□□ 2.83
Usp47Q8BY87 Hmox2-202ENSMUST00000118885 1392 ntAPPRIS P1 TSL 1 (best) BASIC32.76■■■□□ 2.83
Usp47Q8BY87 Ei24-202ENSMUST00000163192 2309 ntAPPRIS P1 TSL 1 (best) BASIC32.75■■■□□ 2.83
Usp47Q8BY87 Slc50a1-201ENSMUST00000029565 1022 ntAPPRIS P1 TSL 1 (best) BASIC32.75■■■□□ 2.83
Usp47Q8BY87 St6galnac6-204ENSMUST00000095045 2536 ntAPPRIS ALT1 TSL 1 (best) BASIC32.75■■■□□ 2.83
Usp47Q8BY87 E2f1-201ENSMUST00000000894 2755 ntAPPRIS ALT2 TSL 1 (best) BASIC32.75■■■□□ 2.83
Usp47Q8BY87 Nans-201ENSMUST00000030018 2179 ntAPPRIS P1 TSL 1 (best) BASIC32.74■■■□□ 2.83
Usp47Q8BY87 Hoxb3-201ENSMUST00000055334 1890 ntAPPRIS P1 TSL 1 (best) BASIC32.74■■■□□ 2.83
Usp47Q8BY87 Cap2-205ENSMUST00000225824 1634 ntBASIC32.74■■■□□ 2.83
Usp47Q8BY87 Tmem260-208ENSMUST00000226400 2281 ntAPPRIS ALT2 BASIC32.74■■■□□ 2.83
Usp47Q8BY87 Peg12-201ENSMUST00000094339 2640 ntAPPRIS P1 BASIC32.74■■■□□ 2.83
Usp47Q8BY87 Mapkap1-202ENSMUST00000113124 1758 ntAPPRIS ALT1 TSL 5 BASIC32.74■■■□□ 2.83
Usp47Q8BY87 Maz-204ENSMUST00000206254 2282 ntTSL 5 BASIC32.72■■■□□ 2.83
Usp47Q8BY87 Npas1-201ENSMUST00000002053 2091 ntAPPRIS P1 TSL 5 BASIC32.72■■■□□ 2.83
Usp47Q8BY87 Mtm1-204ENSMUST00000101501 770 ntTSL 1 (best) BASIC32.71■■■□□ 2.83
Usp47Q8BY87 Eif4e2-204ENSMUST00000113231 1119 ntTSL 1 (best) BASIC32.71■■■□□ 2.83
Retrieved 100 of 76,532 protein–RNA pairs in 73.3 ms