Protein–RNA interactions for Protein: Q6UVK1

CSPG4, Chondroitin sulfate proteoglycan 4, humanhuman

Predictions only

Length 2,322 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4Q6UVK1 RAB26-201ENST00000210187 1675 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
CSPG4Q6UVK1 AC016910.1-201ENST00000422799 1046 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
CSPG4Q6UVK1 MAP4K3-211ENST00000484274 407 ntTSL 2 BASIC20.99■□□□□ 0.95
CSPG4Q6UVK1 OXLD1-201ENST00000374741 620 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
CSPG4Q6UVK1 FLVCR1-AS1-203ENST00000426161 892 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
CSPG4Q6UVK1 HSPB6-202ENST00000587965 711 ntTSL 2 BASIC20.98■□□□□ 0.95
CSPG4Q6UVK1 DEXI-202ENST00000469379 1393 ntAPPRIS P1 TSL 2 BASIC20.98■□□□□ 0.95
CSPG4Q6UVK1 NKX2-1-204ENST00000522719 1417 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
CSPG4Q6UVK1 C1QTNF8-201ENST00000328449 1627 ntAPPRIS P1 TSL 5 BASIC20.98■□□□□ 0.95
CSPG4Q6UVK1 PAOX-206ENST00000480071 1324 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
CSPG4Q6UVK1 ZBTB7A-202ENST00000601588 2083 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
CSPG4Q6UVK1 EIF5A-211ENST00000576930 1439 ntAPPRIS P1 TSL 5 BASIC20.97■□□□□ 0.95
CSPG4Q6UVK1 LY6H-201ENST00000342752 951 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
CSPG4Q6UVK1 LY6H-202ENST00000414417 1056 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
CSPG4Q6UVK1 LY6H-203ENST00000430474 925 ntAPPRIS P3 TSL 3 BASIC20.97■□□□□ 0.95
CSPG4Q6UVK1 HAUS7-201ENST00000370210 1593 ntAPPRIS ALT2 TSL 2 BASIC20.97■□□□□ 0.95
CSPG4Q6UVK1 IGFBP3-202ENST00000381083 1050 ntAPPRIS ALT1 TSL 5 BASIC20.96■□□□□ 0.95
CSPG4Q6UVK1 GRK6-206ENST00000507633 1660 ntTSL 5 BASIC20.96■□□□□ 0.95
CSPG4Q6UVK1 OVOL2-201ENST00000278780 1555 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
CSPG4Q6UVK1 S100A6-201ENST00000368719 665 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
CSPG4Q6UVK1 AC064853.2-201ENST00000641246 144 ntAPPRIS P1 BASIC20.95■□□□□ 0.94
CSPG4Q6UVK1 FSD1L-208ENST00000495708 1906 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
CSPG4Q6UVK1 AC009831.1-201ENST00000580420 1582 ntBASIC20.95■□□□□ 0.94
CSPG4Q6UVK1 NPC2-207ENST00000555619 1035 ntAPPRIS P2 TSL 1 (best) BASIC20.95■□□□□ 0.94
CSPG4Q6UVK1 PLA2G10-201ENST00000438167 1000 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
CSPG4Q6UVK1 HES6-204ENST00000409182 863 ntTSL 2 BASIC20.94■□□□□ 0.94
CSPG4Q6UVK1 C16orf95-201ENST00000253461 953 ntAPPRIS P3 TSL 1 (best) BASIC20.93■□□□□ 0.94
CSPG4Q6UVK1 AC007029.1-201ENST00000604183 313 ntBASIC20.93■□□□□ 0.94
CSPG4Q6UVK1 KLHL35-204ENST00000539798 1936 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
CSPG4Q6UVK1 EMX1-201ENST00000258106 2188 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
CSPG4Q6UVK1 WBP1-201ENST00000233615 1294 ntAPPRIS P2 TSL 1 (best) BASIC20.92■□□□□ 0.94
CSPG4Q6UVK1 G6PC3-201ENST00000269097 1533 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
CSPG4Q6UVK1 PGM5-201ENST00000396392 1782 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
CSPG4Q6UVK1 AL135925.1-201ENST00000605920 1701 ntBASIC20.92■□□□□ 0.94
CSPG4Q6UVK1 MAPK8IP1P1-201ENST00000574657 1439 ntBASIC20.92■□□□□ 0.94
CSPG4Q6UVK1 GPI-201ENST00000356487 2210 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
CSPG4Q6UVK1 FAM120C-203ENST00000477084 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
CSPG4Q6UVK1 AL592293.1-201ENST00000502889 1188 ntBASIC20.92■□□□□ 0.94
CSPG4Q6UVK1 AC009511.2-201ENST00000545904 679 ntTSL 2 BASIC20.92■□□□□ 0.94
CSPG4Q6UVK1 MKNK2-202ENST00000309340 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
CSPG4Q6UVK1 SPATA33-209ENST00000579310 1490 ntAPPRIS ALT2 TSL 2 BASIC20.91■□□□□ 0.94
CSPG4Q6UVK1 SSBP4-201ENST00000270061 1768 ntAPPRIS P3 TSL 1 (best) BASIC20.91■□□□□ 0.94
CSPG4Q6UVK1 PSMG3-202ENST00000288607 1391 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
CSPG4Q6UVK1 IGFBP7-201ENST00000295666 1427 ntAPPRIS P3 TSL 1 (best) BASIC20.91■□□□□ 0.94
CSPG4Q6UVK1 RASL10A-202ENST00000401450 1720 ntTSL 2 BASIC20.91■□□□□ 0.94
CSPG4Q6UVK1 UBE2D2-205ENST00000505548 1113 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
CSPG4Q6UVK1 RAP2CP1-202ENST00000605179 643 ntBASIC20.9■□□□□ 0.94
CSPG4Q6UVK1 SLC15A4-201ENST00000266771 2779 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CSPG4Q6UVK1 WDR86-204ENST00000477459 1428 ntTSL 2 BASIC20.9■□□□□ 0.94
CSPG4Q6UVK1 FADS3-201ENST00000278829 1779 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CSPG4Q6UVK1 EFNA1-202ENST00000368407 1926 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CSPG4Q6UVK1 DUX4L9-201ENST00000449051 1259 ntBASIC20.89■□□□□ 0.94
CSPG4Q6UVK1 ATXN3-252ENST00000620536 1044 ntTSL 5 BASIC20.89■□□□□ 0.94
CSPG4Q6UVK1 ATXN3-253ENST00000621269 936 ntTSL 5 BASIC20.89■□□□□ 0.94
CSPG4Q6UVK1 TUSC1-201ENST00000358022 2052 ntAPPRIS P1 BASIC20.89■□□□□ 0.93
CSPG4Q6UVK1 C14orf80-203ENST00000354560 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.93
CSPG4Q6UVK1 INPP4A-203ENST00000409463 1565 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
CSPG4Q6UVK1 ZFAND2B-201ENST00000289528 1314 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
CSPG4Q6UVK1 TYMP-201ENST00000252029 1630 ntAPPRIS P3 TSL 1 (best) BASIC20.89■□□□□ 0.93
CSPG4Q6UVK1 IL17D-201ENST00000304920 1861 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CSPG4Q6UVK1 AC053527.1-201ENST00000502790 685 ntTSL 3 BASIC20.88■□□□□ 0.93
CSPG4Q6UVK1 SHC2-201ENST00000264554 2494 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CSPG4Q6UVK1 IRX1-201ENST00000302006 1858 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CSPG4Q6UVK1 UBE2E3-213ENST00000602959 909 ntAPPRIS P1 TSL 5 BASIC20.88■□□□□ 0.93
CSPG4Q6UVK1 AC093390.2-201ENST00000638628 1007 ntTSL 5 BASIC20.88■□□□□ 0.93
CSPG4Q6UVK1 TFEB-204ENST00000373033 2331 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CSPG4Q6UVK1 RPUSD1-208ENST00000567114 1835 ntTSL 2 BASIC20.88■□□□□ 0.93
CSPG4Q6UVK1 GUSBP5-201ENST00000418136 578 ntBASIC20.87■□□□□ 0.93
CSPG4Q6UVK1 C17orf49-201ENST00000439424 850 ntAPPRIS P3 TSL 1 (best) BASIC20.87■□□□□ 0.93
CSPG4Q6UVK1 TMEM54-201ENST00000329151 871 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
CSPG4Q6UVK1 AC126177.7-201ENST00000547904 679 ntBASIC20.87■□□□□ 0.93
CSPG4Q6UVK1 AC116025.2-201ENST00000576632 443 ntTSL 3 BASIC20.87■□□□□ 0.93
CSPG4Q6UVK1 TM6SF1-202ENST00000322019 2074 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
CSPG4Q6UVK1 RP9P-202ENST00000450133 1212 ntBASIC20.86■□□□□ 0.93
CSPG4Q6UVK1 CCDC160-202ENST00000517294 1790 ntAPPRIS P1 TSL 5 BASIC20.86■□□□□ 0.93
CSPG4Q6UVK1 LTC4S-205ENST00000486713 496 ntTSL 2 BASIC20.86■□□□□ 0.93
CSPG4Q6UVK1 KRT8P33-201ENST00000508125 1423 ntBASIC20.85■□□□□ 0.93
CSPG4Q6UVK1 VIPR2-204ENST00000421760 717 ntTSL 3 BASIC20.85■□□□□ 0.93
CSPG4Q6UVK1 C9orf147-202ENST00000457681 561 ntTSL 2 BASIC20.85■□□□□ 0.93
CSPG4Q6UVK1 AC010980.1-201ENST00000587192 1142 ntBASIC20.85■□□□□ 0.93
CSPG4Q6UVK1 KCNK3-202ENST00000620977 1956 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
CSPG4Q6UVK1 RASGRP2-204ENST00000377487 642 ntTSL 2 BASIC20.84■□□□□ 0.93
CSPG4Q6UVK1 RPL27A-206ENST00000530022 878 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
CSPG4Q6UVK1 ZDHHC3-203ENST00000342790 1336 ntTSL 5 BASIC20.84■□□□□ 0.93
CSPG4Q6UVK1 HNRNPAB-205ENST00000506259 1674 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
CSPG4Q6UVK1 AL121899.1-202ENST00000411839 536 ntTSL 5 BASIC20.84■□□□□ 0.93
CSPG4Q6UVK1 CLEC11A-201ENST00000250340 1419 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
CSPG4Q6UVK1 RAD51-208ENST00000532743 1515 ntTSL 2 BASIC20.83■□□□□ 0.93
CSPG4Q6UVK1 RAET1E-AS1-203ENST00000606915 1210 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
CSPG4Q6UVK1 SLC35D2-201ENST00000253270 1613 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
CSPG4Q6UVK1 SSBP3-202ENST00000357475 1533 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
CSPG4Q6UVK1 PKIG-205ENST00000372891 1443 ntAPPRIS P1 TSL 2 BASIC20.82■□□□□ 0.92
CSPG4Q6UVK1 CTAG1B-201ENST00000328435 748 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CSPG4Q6UVK1 CTAG1A-202ENST00000599837 748 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CSPG4Q6UVK1 TPI1-210ENST00000613953 1460 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
CSPG4Q6UVK1 FEZ1-201ENST00000278919 1748 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CSPG4Q6UVK1 HOXD8-201ENST00000313173 1917 ntAPPRIS P3 TSL 2 BASIC20.81■□□□□ 0.92
CSPG4Q6UVK1 DHRS13-203ENST00000426464 1569 ntTSL 2 BASIC20.81■□□□□ 0.92
CSPG4Q6UVK1 YAP1-204ENST00000526343 2393 ntTSL 5 BASIC20.8■□□□□ 0.92
CSPG4Q6UVK1 WBP1-202ENST00000393972 1325 ntTSL 2 BASIC20.8■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 326.7 ms